BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645403|ref|NP_207577.1| hypothetical protein
[Helicobacter pylori 26695]
         (44 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223439.1|  putative [Helicobacter pylori J99]               75  4e-16
ref|NP_223516.1|  putative [Helicobacter pylori J99]               21  6.2

>ref|NP_223439.1| putative [Helicobacter pylori J99]
          Length = 43

 Score = 74.7 bits (182), Expect = 4e-16
 Identities = 36/42 (85%), Positives = 39/42 (92%)

Query: 2  LFTVIFVAVLQAALGMLSVRQEICRNPSQPHNFKVLSILANF 43
          +FTVIFVAVLQAALGMLSVRQEICRNPSQPH+FK L I+ NF
Sbjct: 1  MFTVIFVAVLQAALGMLSVRQEICRNPSQPHDFKSLVIVTNF 42



>ref|NP_223516.1| putative [Helicobacter pylori J99]
          Length = 218

 Score = 20.8 bits (42), Expect = 6.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 2   LFTVIFVAVLQAALGMLS---VRQEICRNPSQPHNFK 35
           L T+   + L A + +L    + ++I +NPS+P N K
Sbjct: 174 LSTIPLSSSLYAIISVLKHYGMLEDIQQNPSKPTNLK 210



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.335    0.141    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,800
Number of Sequences: 1491
Number of extensions: 684
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 44
length of database: 494,079
effective HSP length: 20
effective length of query: 24
effective length of database: 464,259
effective search space: 11142216
effective search space used: 11142216
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 41 (20.4 bits)