BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645404|ref|NP_207578.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(184 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223440.1| putative [Helicobacter pylori J99] 342 4e-96
ref|NP_223252.1| putative [Helicobacter pylori J99] 29 0.067
ref|NP_224138.1| glutamine fructose-6-phosphate aminotransf... 27 0.26
ref|NP_222926.1| putative [Helicobacter pylori J99] 27 0.26
ref|NP_222742.1| putative [Helicobacter pylori J99] 27 0.33
ref|NP_224090.1| putative [Helicobacter pylori J99] 26 0.57
ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter ... 26 0.74
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 25 0.97
ref|NP_223135.1| putative [Helicobacter pylori J99] 25 1.3
ref|NP_223993.1| PHOSPHATIDYLSERINE DECARBOXYLASE [Helicoba... 25 1.7
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 24 2.2
ref|NP_223596.1| D-Amino acid dehydrogenase [Helicobacter p... 24 2.2
ref|NP_224061.1| putative Inner membrane protein [Helicobac... 23 3.7
ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicob... 23 3.7
ref|NP_223498.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223399.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_222901.1| TRIOSE PHOPHATE ISOMERASE [Helicobacter py... 23 3.7
ref|NP_224171.1| putative [Helicobacter pylori J99] 23 4.8
ref|NP_223475.1| putative osmoprotection binding protein [H... 23 4.8
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 23 6.3
ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter ... 22 8.2
ref|NP_223488.1| putative [Helicobacter pylori J99] 22 8.2
ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 22 8.2
ref|NP_222772.1| putative [Helicobacter pylori J99] 22 8.2
>ref|NP_223440.1| putative [Helicobacter pylori J99]
Length = 184
Score = 342 bits (877), Expect = 4e-96
Identities = 170/184 (92%), Positives = 176/184 (95%)
Query: 1 MRAFLKILMVLIFMSVAYAKNPSTLSKEEEVLQHLQSFSAHFKQVLKNEKPLVYYGVLKA 60
M+AFLKI MVLIF+ VA+AKNP TLSKEEEVLQ+LQSFSAHFKQVLKNEKPLVYYGVLKA
Sbjct: 1 MKAFLKICMVLIFVGVAHAKNPLTLSKEEEVLQNLQSFSAHFKQVLKNEKPLVYYGVLKA 60
Query: 61 KAPNWALWVYEKPLKKEIYMNDKEVVIYEPNLFQATITPLKDKTDFFTILKRLKKQDDGS 120
KAPNWALWVYEKPLKKEIYMNDKEVV+YEPNLFQATITPLKDKTDFFTILK+LKKQ DGS
Sbjct: 61 KAPNWALWVYEKPLKKEIYMNDKEVVVYEPNLFQATITPLKDKTDFFTILKQLKKQTDGS 120
Query: 121 FKTTINKTTYRLVFKDGKPFSLEFKDGMNNLVTITFSQAEINPTIANEIFVFKPKDENID 180
FKTTINKTTYRLVFKDGKPFSLEFKD MNNLVTITFSQAEINP I NEIFVF PKDENID
Sbjct: 121 FKTTINKTTYRLVFKDGKPFSLEFKDDMNNLVTITFSQAEINPKIPNEIFVFNPKDENID 180
Query: 181 IVRQ 184
IVRQ
Sbjct: 181 IVRQ 184
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 29.3 bits (64), Expect = 0.067
Identities = 31/126 (24%), Positives = 56/126 (43%), Gaps = 19/126 (15%)
Query: 65 WALWVYEKPLKKEIYMNDKEV--VIYEPNLFQATITPLK-------DKTDFFTIL----K 111
WA+ +EK KEI ++DK + ++ N ++ +K DK I+ K
Sbjct: 95 WAVSYFEKLKVKEIILDDKNKANIFFDGNKYELEFPGIKGEFSLEDDKNIKLKIINLLFK 154
Query: 112 RLKKQDDGS--FKTTINKTTYRLVFKD-GKPFSLEFKDGMNNLVTITFSQAEINPTIANE 168
+K Q DG+ + K + L+ K +P + + G+ +L TI + +IN +
Sbjct: 155 DVKVQVDGNAHYSPKARKMAFNLIVKPLVEPSAAIYLQGLTDLKTI---ELKINTSPMKS 211
Query: 169 IFVFKP 174
+ KP
Sbjct: 212 LAFLKP 217
>ref|NP_224138.1| glutamine fructose-6-phosphate aminotransferase [Helicobacter
pylori J99]
Length = 597
Score = 27.3 bits (59), Expect = 0.26
Identities = 14/32 (43%), Positives = 20/32 (61%)
Query: 2 RAFLKILMVLIFMSVAYAKNPSTLSKEEEVLQ 33
+AF +M+L +SV K T+SKEEE +Q
Sbjct: 394 KAFSSQVMLLWLLSVYLGKQLGTISKEEERIQ 425
>ref|NP_222926.1| putative [Helicobacter pylori J99]
Length = 161
Score = 27.3 bits (59), Expect = 0.26
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 17/99 (17%)
Query: 6 KILMVLIFMS-VAYAKNPSTLSKEEEVLQHLQSFSAHFKQVLKNEKPLVYYGVLKAKAPN 64
K L VL ++S V KN +++ L+ +Q F+ KP++ + K
Sbjct: 71 KRLYVLQYLSHVDITKNKQDSQLKKDCLEFIQRFNI--------PKPIIVTALYNLKGI- 121
Query: 65 WALWVYEKPLKKEIYMNDKEVVIYEPNLFQATITPLKDK 103
KP KKE+ +++ ++E Q I LKD+
Sbjct: 122 -------KPTKKEVAKQLQKLYVWERRYQQGGIDALKDR 153
>ref|NP_222742.1| putative [Helicobacter pylori J99]
Length = 523
Score = 26.9 bits (58), Expect = 0.33
Identities = 27/97 (27%), Positives = 39/97 (39%), Gaps = 7/97 (7%)
Query: 60 AKAPNWALWVYEKPLKKEIYMNDKEVVIYEPNLFQATITPLKDKTDFFTILKRLKKQDDG 119
A+ N+AL+ YEKP + K + +E LF AT IL K G
Sbjct: 232 ARKSNYALYGYEKPTTPRL---SKRLENHELTLFNATSCATYTTASLECILDSSFKNSLG 288
Query: 120 SFKTTINKTTYRLVFKDGKPFSLEFKDGMNNLVTITF 156
+++ N TY L K F DG N+ ++
Sbjct: 289 AYE---NLPTY-LTKAGVKVFWYSANDGEKNVKVTSY 321
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 26.2 bits (56), Expect = 0.57
Identities = 14/42 (33%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Query: 18 YAKNPSTLSKEEEVLQHLQSFSAHFKQVLKNEKPL-VYYGVL 58
++K PS E+ + ++S FKQ+L N+K L + G+L
Sbjct: 28 HSKIPSLKQALEQTISKIKSSKEFFKQLLHNKKKLYIALGIL 69
>ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 25.8 bits (55), Expect = 0.74
Identities = 29/79 (36%), Positives = 39/79 (48%), Gaps = 17/79 (21%)
Query: 43 KQVLKNEKPLVYYGVLKAKAPNWALWVYEKP-----LKKEI--YMNDKEVVIYEPNLFQA 95
++VLKN KPL G + +PN + V P LK+EI N V+IY N +Q
Sbjct: 255 QEVLKNLKPLDLIGRCELLSPNILIDVGHNPHSAKALKEEIKRIFNAPIVLIY--NCYQ- 311
Query: 96 TITPLKDKTDFFTILKRLK 114
DK D F +L+ LK
Sbjct: 312 ------DK-DAFLVLEILK 323
Score = 22.7 bits (47), Expect = 6.3
Identities = 14/38 (36%), Positives = 21/38 (54%)
Query: 25 LSKEEEVLQHLQSFSAHFKQVLKNEKPLVYYGVLKAKA 62
L K + +L+ L A F+++ +NE LVY L A A
Sbjct: 342 LEKLKGILETLGLEHALFEELKENENYLVYGSFLVANA 379
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 25.4 bits (54), Expect = 0.97
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 70 YEKPLKKEIYMNDKEVVIYEPNLFQATITPLKDKTD 105
Y + KK I +ND+ VVI ++ I PL+ D
Sbjct: 353 YSEIEKKNIMLNDRVVVIRSGDVIPKIIKPLESYRD 388
>ref|NP_223135.1| putative [Helicobacter pylori J99]
Length = 631
Score = 25.0 bits (53), Expect = 1.3
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 66 ALWVYEKP-LKKEIYMNDKEVVI----YEPNLFQATITPLKD 102
AL ++ P L+KEI ++ ++ Y PNLF A TP K+
Sbjct: 6 ALASFDAPFLEKEISKRFRDNLVFFKSYHPNLFNALNTPFKN 47
>ref|NP_223993.1| PHOSPHATIDYLSERINE DECARBOXYLASE [Helicobacter pylori J99]
Length = 267
Score = 24.6 bits (52), Expect = 1.7
Identities = 22/68 (32%), Positives = 30/68 (43%), Gaps = 22/68 (32%)
Query: 12 IFMSVAYAKNPSTLSK---------------EEEVLQHLQSFSAHFKQVLKNEKPLVYYG 56
+F SVA K PS + K E E L++ +S +A F + LK E+P
Sbjct: 11 VFGSVAGYKFPSFIQKSINALYVKIFKIDLSEFEPLENYKSLNALFMRSLKKERPF---- 66
Query: 57 VLKAKAPN 64
KAPN
Sbjct: 67 ---DKAPN 71
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 24.3 bits (51), Expect = 2.2
Identities = 12/28 (42%), Positives = 16/28 (56%), Gaps = 3/28 (10%)
Query: 49 EKPLVYYGVL---KAKAPNWALWVYEKP 73
EK + G L K K W+LW+Y+KP
Sbjct: 260 EKAKINRGYLQNPKHKRTWWSLWLYKKP 287
>ref|NP_223596.1| D-Amino acid dehydrogenase [Helicobacter pylori J99]
Length = 410
Score = 24.3 bits (51), Expect = 2.2
Identities = 29/128 (22%), Positives = 49/128 (37%), Gaps = 8/128 (6%)
Query: 43 KQVLKNEKPLVYYGVLKAKAPNWALWVYEKPLKKEIYMNDKEVVIYEPNLFQATITPLKD 102
K +LKN+ PL ++ L K W L K + Y LKD
Sbjct: 67 KLMLKNQAPLKFHFGLNLKLYQWILKFMTSANAKSTHRTIALFERYGWLSIDMYHQMLKD 126
Query: 103 KTDFF------TILKRLKKQDDGSFKTTINKTTYRLV-FKDGKPFSLEFKDGMNNLVTIT 155
DF+ ++ L++ + KT N Y+++ K+ K + D + V +T
Sbjct: 127 GMDFWYKEDGLLMIYTLEESFEKKLKTCDNSGAYKILNVKETKEYMPIANDNICGSVLLT 186
Query: 156 FSQAEINP 163
A ++P
Sbjct: 187 -ENAHVDP 193
>ref|NP_224061.1| putative Inner membrane protein [Helicobacter pylori J99]
Length = 549
Score = 23.5 bits (49), Expect = 3.7
Identities = 6/19 (31%), Positives = 12/19 (62%)
Query: 53 VYYGVLKAKAPNWALWVYE 71
V Y ++ K+ W LW+++
Sbjct: 440 VLYNAVELKSSEWVLWIHD 458
>ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 701
Score = 23.5 bits (49), Expect = 3.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 41 HFKQVLKNEKPLVYYGVLKAKAP 63
HF+ K+ K ++Y+ + AK P
Sbjct: 108 HFQTAFKSNKEVLYHAKIHAKQP 130
>ref|NP_223498.1| putative [Helicobacter pylori J99]
Length = 245
Score = 23.5 bits (49), Expect = 3.7
Identities = 22/98 (22%), Positives = 38/98 (38%)
Query: 5 LKILMVLIFMSVAYAKNPSTLSKEEEVLQHLQSFSAHFKQVLKNEKPLVYYGVLKAKAPN 64
LK L+ + +AK+ +L LQS F + +K + K
Sbjct: 115 LKEYKELLSEKLIHAKSSQEFLNTANMLLSLQSQVLSFVVENERKKAFLQMKAKKQSVDF 174
Query: 65 WALWVYEKPLKKEIYMNDKEVVIYEPNLFQATITPLKD 102
+AL+ + IY+ +KE ++ Q T LK+
Sbjct: 175 YALYPNLGEIGGVIYLKEKEKQLFLKTTLQRTKEVLKE 212
>ref|NP_223399.1| putative [Helicobacter pylori J99]
Length = 404
Score = 23.5 bits (49), Expect = 3.7
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 100 LKDKTDFFTILKRLKKQDDGSFKT------------TINKTTYRLVFKDGKPFSLEFKDG 147
++DK D+ ++ +KK+ + SFKT + +T+ R+ ++ + S
Sbjct: 101 IEDK-DYHDTMQSIKKEMEDSFKTLDEKEAIDVAYLCVKETSSRVQERERELLSFAKHWN 159
Query: 148 MNNLVTITFSQAEINPTIANE 168
+ +V T +QAE E
Sbjct: 160 IPTIVVFTHTQAEAGDAFVQE 180
>ref|NP_222901.1| TRIOSE PHOPHATE ISOMERASE [Helicobacter pylori J99]
Length = 234
Score = 23.5 bits (49), Expect = 3.7
Identities = 13/46 (28%), Positives = 23/46 (49%)
Query: 16 VAYAKNPSTLSKEEEVLQHLQSFSAHFKQVLKNEKPLVYYGVLKAK 61
VAY + +K+ L+ + KQ+L + PL+Y G + A+
Sbjct: 156 VAYEPIWAIGTKKSASLEDIYLTHGFLKQILNQKTPLLYGGSVNAQ 201
>ref|NP_224171.1| putative [Helicobacter pylori J99]
Length = 170
Score = 23.1 bits (48), Expect = 4.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 141 SLEFKDGMNNLVTITFSQAEINPTIANEIFVFK 173
S+EFKD MN LV F + A+ I + +
Sbjct: 47 SVEFKDLMNRLVVQRFQNRLASEKDADSIIIIE 79
>ref|NP_223475.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 553
Score = 23.1 bits (48), Expect = 4.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 99 PLKDKTDFFTILKRLKKQ 116
PL K DF TI KR +K+
Sbjct: 358 PLTQKVDFETIKKRYEKE 375
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 22.7 bits (47), Expect = 6.3
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 46 LKNEKPLVYYGVLKAKAPNWALWVYEKPLKKEIYMN 81
+K E PLV Y + A N A + P+K N
Sbjct: 373 IKTENPLVRYAINNALKLNKASLIAMHPIKDNALAN 408
>ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter pylori J99]
Length = 533
Score = 22.3 bits (46), Expect = 8.2
Identities = 19/60 (31%), Positives = 30/60 (49%), Gaps = 5/60 (8%)
Query: 30 EVLQHLQSFSAHFKQVLKNEKPLVYYGVLKAKAPNWALWVYEKPLK--KEIYMNDKEVVI 87
E L+ ++ F F + EK L+ + K+K AL + +K K K++Y KE VI
Sbjct: 440 EDLEEIEGFLERFDKANLKEKSLMLESLKKSKNTAIALELKKKEKKSLKKVY---KEEVI 496
>ref|NP_223488.1| putative [Helicobacter pylori J99]
Length = 196
Score = 22.3 bits (46), Expect = 8.2
Identities = 15/43 (34%), Positives = 20/43 (45%)
Query: 76 KEIYMNDKEVVIYEPNLFQATITPLKDKTDFFTILKRLKKQDD 118
K+ Y + V+IY P Q +DK IL+RL Q D
Sbjct: 121 KKRYPVSRVVLIYAPRALQIERLLERDKLKEAEILQRLACQMD 163
>ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 457
Score = 22.3 bits (46), Expect = 8.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 38 FSAHFKQVLKNEKPLVYYGVL 58
F AHFK+ L+ KP G+L
Sbjct: 398 FKAHFKKELEKLKPYEEAGLL 418
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 22.3 bits (46), Expect = 8.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 25 LSKEEEVLQHLQSFSAHFKQVLKNEK 50
L+KE+ LQ + + KQVL+NEK
Sbjct: 63 LTKEKTELQKQVNELKNSKQVLENEK 88
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,970
Number of Sequences: 1491
Number of extensions: 10423
Number of successful extensions: 44
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 26
length of query: 184
length of database: 494,079
effective HSP length: 72
effective length of query: 112
effective length of database: 386,727
effective search space: 43313424
effective search space used: 43313424
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)