BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645408|ref|NP_207582.1| hypothetical protein
[Helicobacter pylori 26695]
         (48 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223421.1|  putative [Helicobacter pylori J99]               23  1.2
ref|NP_223860.1|  putative [Helicobacter pylori J99]               21  4.7
ref|NP_222827.1|  putative [Helicobacter pylori J99]               21  4.7
ref|NP_223176.1|  putative [Helicobacter pylori J99]               21  6.1
ref|NP_223631.1|  GTPase in circumferential ring formation [...    20  7.9

>ref|NP_223421.1| putative [Helicobacter pylori J99]
          Length = 286

 Score = 23.1 bits (48), Expect = 1.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 8   ESNESTVVAEFHSNNERKSAYESEAELERAFIALLEKQ 45
           E++E    AE       K A  +E++  RAF+ L EK+
Sbjct: 136 EADEFIKKAESLKEEATKKAESAESDCRRAFMRLGEKK 173



>ref|NP_223860.1| putative [Helicobacter pylori J99]
          Length = 234

 Score = 21.2 bits (43), Expect = 4.7
 Identities = 10/16 (62%), Positives = 12/16 (74%)

Query: 28  YESEAELERAFIALLE 43
           Y S+ EL RAF +LLE
Sbjct: 132 YGSKNELSRAFKSLLE 147



>ref|NP_222827.1| putative [Helicobacter pylori J99]
          Length = 627

 Score = 21.2 bits (43), Expect = 4.7
 Identities = 11/41 (26%), Positives = 21/41 (50%)

Query: 3   YETIAESNESTVVAEFHSNNERKSAYESEAELERAFIALLE 43
           Y T +E  ++  +A+       K A E + ++E AF+ + E
Sbjct: 477 YPTQSEQAKNLKIAKKKCEEIIKYANEKKTQVEEAFLKVAE 517



>ref|NP_223176.1| putative [Helicobacter pylori J99]
          Length = 450

 Score = 20.8 bits (42), Expect = 6.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 8   ESNESTVVAEFHSNNERKSAYESEAELER 36
           E+ E     E    NE+ +A E+E E+ +
Sbjct: 335 ETEERRKALEMDKGNEKVNAKENEREINQ 363



>ref|NP_223631.1| GTPase in circumferential ring formation [Helicobacter pylori J99]
          Length = 385

 Score = 20.4 bits (41), Expect = 7.9
 Identities = 9/26 (34%), Positives = 16/26 (60%)

Query: 17  EFHSNNERKSAYESEAELERAFIALL 42
           ++  N +RK A E   ELE++  ++L
Sbjct: 154 KYEGNQKRKRAEEGLKELEQSSDSIL 179



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.303    0.118    0.285 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,610
Number of Sequences: 1491
Number of extensions: 1055
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 48
length of database: 494,079
effective HSP length: 24
effective length of query: 24
effective length of database: 458,295
effective search space: 10999080
effective search space used: 10999080
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 41 (20.4 bits)