BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645409|ref|NP_207583.1| anti-codon nuclease masking
agent (prrB) [Helicobacter pylori 26695]
(431 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 285 2e-78
ref|NP_223503.1| TYPE I RESTRICTIONENZYME (SPECIFICITY SUBU... 181 3e-47
ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUB... 80 1e-16
ref|NP_222831.1| putative [Helicobacter pylori J99] 36 0.002
ref|NP_223830.1| putative [Helicobacter pylori J99] 36 0.002
ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 29 0.27
ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 28 0.35
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 28 0.59
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 27 0.78
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 27 1.0
ref|NP_223833.1| ADP-HEPTOSE--LPS HEPTOSYLTRANSFERASE II [H... 27 1.3
ref|NP_223560.1| putative [Helicobacter pylori J99] 26 2.3
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 3.0
ref|NP_223004.1| PERIPLASMIC DIPEPTIDE TRANSPORT SUBSTRATE-... 25 3.0
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 25 3.9
ref|NP_222827.1| putative [Helicobacter pylori J99] 25 3.9
ref|NP_223915.1| putative [Helicobacter pylori J99] 25 5.0
ref|NP_223179.1| GLUTAMINE SYNTHETASE [Helicobacter pylori ... 25 5.0
ref|NP_223281.1| putative lipopolysaccharide biosynthesis p... 24 6.6
ref|NP_222961.1| putative [Helicobacter pylori J99] 24 8.6
>ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 454
Score = 285 bits (729), Expect = 2e-78
Identities = 200/456 (43%), Positives = 261/456 (56%), Gaps = 42/456 (9%)
Query: 1 MHKIERLLQTLAPKGVEFKTLEEVFEIKNGYTPSKNNPEFWKNGT--IPWFRMEDIRENG 58
M+KIE LL TLAPKGVEF+ L ++ E G K+ F + +P+ ++ N
Sbjct: 1 MNKIELLLHTLAPKGVEFRKLGDIGEFYGGLV-GKSKKSFSQGNKFYVPYI---NVFNNP 56
Query: 59 RILKDSIQHITPKALKGKKLFPKNSIIIS-TKATIGEHALLIVDSLANQQFTFLSKKANC 117
++ ++++ + + + ++ + + + + A+ V + ++ +L+
Sbjct: 57 QLDLNALESVQIGDKEKQNTIQLGDVLFTGSSENLEDCAMSCVVTQKIEEDIYLNSFCFG 116
Query: 118 DLALDMKFF---FYQCFLLGEWCKNNIN-----VSGFASVDMTAFKKYKFPIPPLEIQQE 169
D F F + FL + NI+ V+ F +V K PIPPLEIQQE
Sbjct: 117 FRFFDKNLFNPSFLKHFLRDYNFRKNISKVANGVTRF-NVSKQLLLKITIPIPPLEIQQE 175
Query: 170 IVKILDAFTELNTELNTELNTELKARKKQYEYYQNMLLDFNDINQSHKDAKERLAQKTYP 229
IV ILDAFTELNTELNTELNTEL ARKKQY+YYQNMLLDFNDINQS KDAKERLAQK YP
Sbjct: 176 IVTILDAFTELNTELNTELNTELNARKKQYQYYQNMLLDFNDINQSRKDAKERLAQKPYP 235
Query: 230 KRLKTLLQTLAPKGVEFRKLGEVCEILDNRRI--PIAKNKRNPGIYPYYGANGIQ----- 282
KRLK LL TLAPKGVEFRKLG++ E + ++K P + +YG Q
Sbjct: 236 KRLKQLLHTLAPKGVEFRKLGDIGEFTRGNGLLKSDLQDKGRPVV--HYGQIHTQYNLSI 293
Query: 283 DYIDSYIFDGDF----------VLVGEDGSVINKDNTPVVNWASGKIWVNNHAHVLQTKN 332
D SY+ D F +L+ + KD + W + + + N
Sbjct: 294 DKTISYVNDALFHKLKKAKPNDILIATTSENV-KDVGKSIAWLGNEEVAFSGEMYSYSTN 352
Query: 333 ELKLKFLYFYLQTI----DVSYCVAGTP-PKINQENLKKIAIPIPPLEIQQEIVKILDQF 387
E KF+ +Y QT + + GT +I++ +LK+I IPIPPLEIQQEIV ILDQF
Sbjct: 353 E-NPKFIIYYFQTYFFQKEKEKKITGTKVMRIHENDLKQITIPIPPLEIQQEIVTILDQF 411
Query: 388 SILTTDLLAGIPAEIKARKKQYEYYREKLLTFKPLT 423
S LTTDL AGIPAEIKARKKQYEYYREKLLTFKPLT
Sbjct: 412 SALTTDLQAGIPAEIKARKKQYEYYREKLLTFKPLT 447
>ref|NP_223503.1| TYPE I RESTRICTIONENZYME (SPECIFICITY SUBUNIT) [Helicobacter pylori
J99]
Length = 207
Score = 181 bits (459), Expect = 3e-47
Identities = 103/210 (49%), Positives = 136/210 (64%), Gaps = 14/210 (6%)
Query: 231 RLKTLLQTLAPKGVEFRKLGEVCEILDNRRIPIAK--NKRNPGIYPYYGANG-IQDYIDS 287
+++ LLQTLAPKGV FRKLGEVCE + + + I++ +N G+YP + + Y
Sbjct: 3 KIERLLQTLAPKGVGFRKLGEVCESTNKKTLKISEVSEVKNKGMYPVINSGRELYGYYHD 62
Query: 288 YIFDGDFVLVGEDGSVINKDNTPVVNWASGKIWVNNHAHVLQTK--NELKLKFLYFYLQT 345
+ DG+ + + G +N+ + K + + + K NEL KFLYFYL+T
Sbjct: 63 FNNDGENITIASRGEYAG-----FINYFNEKFFAGGLCYPYKVKDTNELLTKFLYFYLKT 117
Query: 346 IDV----SYCVAGTPPKINQENLKKIAIPIPPLEIQQEIVKILDQFSILTTDLLAGIPAE 401
+ + G+ P +N+ +++ + IPIPPLEIQQEIV ILDQFS LTTDL AGIPAE
Sbjct: 118 NETQIMENLVFRGSIPALNKADIETLTIPIPPLEIQQEIVTILDQFSALTTDLQAGIPAE 177
Query: 402 IKARKKQYEYYREKLLTFKPLTPLNSKELA 431
IKARKKQYEYYREKLL FKPLTPLN+KELA
Sbjct: 178 IKARKKQYEYYREKLLAFKPLTPLNNKELA 207
Score = 89.4 bits (220), Expect = 2e-19
Identities = 73/222 (32%), Positives = 106/222 (46%), Gaps = 34/222 (15%)
Query: 1 MHKIERLLQTLAPKGVEFKTLEEVFEIKNGYTPSKNNPEFWKNGTIPWFRMEDIRENGRI 60
M+KIERLLQTLAPKGV F+ L EV E N T+ + +++ G
Sbjct: 1 MNKIERLLQTLAPKGVGFRKLGEVCESTN-------------KKTLKISEVSEVKNKG-- 45
Query: 61 LKDSIQHITPKALKGKKLFP-----KNSIIISTKATIGEHALLIVDSLANQQF-----TF 110
+ P G++L+ N T A+ GE+A I + N++F +
Sbjct: 46 -------MYPVINSGRELYGYYHDFNNDGENITIASRGEYAGFI--NYFNEKFFAGGLCY 96
Query: 111 LSKKANCDLALDMKFFFYQCFLLGEWCKNNINVSGFASVDMTAFKKYKFPIPPLEIQQEI 170
K + + L +FY + +N + +++ + PIPPLEIQQEI
Sbjct: 97 PYKVKDTNELLTKFLYFYLKTNETQIMENLVFRGSIPALNKADIETLTIPIPPLEIQQEI 156
Query: 171 VKILDAFTELNTELNTELNTELKARKKQYEYYQNMLLDFNDI 212
V ILD F+ L T+L + E+KARKKQYEYY+ LL F +
Sbjct: 157 VTILDQFSALTTDLQAGIPAEIKARKKQYEYYREKLLAFKPL 198
>ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT) [Helicobacter
pylori J99]
Length = 409
Score = 80.1 bits (196), Expect = 1e-16
Identities = 98/393 (24%), Positives = 167/393 (41%), Gaps = 59/393 (15%)
Query: 21 LEEVFEIKNGYTPSKNNPEFWKNGTIPWFRMEDIRE-NGRILKDSIQHITPKALKGKK-- 77
L+++ +I G TP NNP+ + N I W +D+ GR +K + I+ K
Sbjct: 9 LKDLGKIVGGATPPTNNPKNYGN-KIAWITPKDLSTLQGRYIKKGSRSISRLGFKSCSCV 67
Query: 78 LFPKNSIIISTKATIGEHALLIVDSLANQQFTFLSKKANCDLALDMKFFFYQCFLLGEWC 137
L PK++I+ S++A IG A+ NQ F + + K +F + L ++
Sbjct: 68 LLPKHAILFSSRAPIGYVAIAEKRLCTNQGFK--------SIIPNKKIYFEFLYYLLKYY 119
Query: 138 KNNI-NVSG---FASVDMTAFKKYKFPIPPLEIQQEIV----KILDAFTELNTELNTELN 189
K+NI N+ G F V ++ IPP +Q+ + ILD E N ++N L+
Sbjct: 120 KDNISNIGGGTTFKEVSGATLGLFQVKIPPTYYEQQKIAHTLSILDQKIENNHKINELLH 179
Query: 190 TELKARKKQYEYYQNMLLDFNDINQSHKDAKERLAQKTYPKRLKTLLQTLAPKGVEFRKL 249
L+ +QY + F+ +++++K + + + K L L+ P + + L
Sbjct: 180 KILELLYEQY------FVRFDFLDENNKPYQTSGGKMKFSKELNRLI----PNDFKVKTL 229
Query: 250 GEVCEILDNRRIPIAKNKRNPGIYPY------------YGANGIQDYID-------SYIF 290
GE+ + + P ++ IY Y Y +N YI Y +
Sbjct: 230 GELITWISGSQPP-----KSCHIYEYKEGYIRFIQNRDYSSNNYVTYIPISKNNKICYQY 284
Query: 291 DGDFVLVGEDGSVINKDNTPVVNWASGKIWVNNHAHVLQTKNELKLKFLYFYLQTIDVSY 350
D GE GSV N A KI V N + ++ L K + YL
Sbjct: 285 DIMMDKYGEAGSV-RFGLQGAYNVALSKISVLNQSMQEYIRSYLNSKPIKKYLSNA---- 339
Query: 351 CVAGTPPKINQENLKKIAIPIPPLEIQQEIVKI 383
C+A T +N+ ++ + +PIPP+ + Q+ KI
Sbjct: 340 CMASTRASLNENHIYSLMLPIPPINLLQKYEKI 372
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 36.2 bits (82), Expect = 0.002
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 135 EWCKNNINVSGFASVDMTAFKKYKFPIPPLEIQQEIVKILDAFTELNTELNTELNTELKA 194
EW K N+ + A M + P L Q ++ + F ++N E+ NTE K
Sbjct: 345 EWQKENLKIRSKAQAKMLEMRN---PQAHLPTSQSLLFVQKIFADINKEIEAVANTEKKT 401
Query: 195 RKKQYEYYQNM 205
K Y Y + M
Sbjct: 402 EKAGYGYSKRM 412
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 35.8 bits (81), Expect = 0.002
Identities = 20/72 (27%), Positives = 31/72 (42%), Gaps = 1/72 (1%)
Query: 135 EWCKNNINVSGFASVDMTAFKKYK-FPIPPLEIQQEIVKILDAFTELNTELNTELNTELK 193
EW K N+ + A M + K P L Q ++ + F +++ E+ NTE K
Sbjct: 312 EWQKENLKIRSKAQAKMLEMRSLKPDPQAHLSTSQSLLLVQKIFADVSKEIKVVANTEKK 371
Query: 194 ARKKQYEYYQNM 205
K Y Y + M
Sbjct: 372 VEKAGYGYSKRM 383
>ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 742
Score = 28.9 bits (63), Expect = 0.27
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 201 YYQNMLLDF---NDINQS---HKDAKERLAQKTYPKRLKTLLQTLAPKGVEFRKLGEVCE 254
Y+++ LLDF NDIN + +++A + K Y K L L Q A V +G E
Sbjct: 130 YFKSALLDFDNPNDINDNDINNEEAPKSTPLKKYTKNLSALAQNNALDPV----IGREEE 185
Query: 255 ILDNRRIPIAKNKRNP 270
IL I + K NP
Sbjct: 186 ILRVIEILGRRKKNNP 201
>ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 624
Score = 28.5 bits (62), Expect = 0.35
Identities = 48/224 (21%), Positives = 77/224 (33%), Gaps = 42/224 (18%)
Query: 4 IERLLQTLAPKGVEFKTLEEVFEIKNGYTPS------KNNPEFWKNGTIPWFRMEDIREN 57
+ER+ + P + L ++ E+ Y + KNN KN EN
Sbjct: 2 MERMDALITPSNWQKVRLGDILELLTDYHANGSYEILKNNVTLLKNVDFAIMIRTTNFEN 61
Query: 58 GRILKDSIQHITPKALKGKKLFPKNSIIISTKATIGEHALLIVDSLANQQFTFLSKKANC 117
D I +I KA + + +K G+ ++V+ +AN + K N
Sbjct: 62 NDFKNDLI-YIDKKAYE---------FLSKSKVFAGD---ILVNKIANAGTAYFMPKLNQ 108
Query: 118 DLALDMKFF-------------FYQCFLLGEWCKNNINVSGFASVDMTAFKKYKFPIPPL 164
++L M F F Q K N S ++ K P+PPL
Sbjct: 109 PVSLGMNLFLLRIKPSYNNLFIFKQIANYERVLKTFANGSATKTITKNVIKNLLIPLPPL 168
Query: 165 EIQQEIVKI----------LDAFTELNTELNTELNTELKARKKQ 198
Q I I LDA + L+ EL +++K+
Sbjct: 169 NEQIAIANILSDVDRYLCSLDALILKKESVKKALSFELLSQRKR 212
Score = 24.3 bits (51), Expect = 6.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 359 INQENLKKIAIPIPPLEIQQEIVKIL 384
I + +K + IP+PPL Q I IL
Sbjct: 153 ITKNVIKNLLIPLPPLNEQIAIANIL 178
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 27.7 bits (60), Expect = 0.59
Identities = 22/76 (28%), Positives = 35/76 (45%), Gaps = 5/76 (6%)
Query: 168 QEIVKILDAFTELNTELNTELNTELKARKKQYEYYQNMLLDFNDINQ----SHKDAKERL 223
Q++V + D LNTE +LN + K+ +E + L+ N N S KE+
Sbjct: 113 QKLVFLADEAHHLNTETKKKLNDSEASEKRNWESVVKLALEQNKDNLLLEFSATIPKEKS 172
Query: 224 AQKTYPKRLKTLLQTL 239
+ Y + LK + TL
Sbjct: 173 VEDKY-ENLKVVTYTL 187
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 27.3 bits (59), Expect = 0.78
Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 20/136 (14%)
Query: 150 DMTAFKKYKFPIPPLEIQQEIVKILDAFTELNTELNTELNTELKARKKQYEYYQNMLLDF 209
DM KK+ + + Q+E+ +++ ++ EL T + K Y+Y + + +
Sbjct: 3 DMVDLKKFVTELG--KTQKELKNVIEQAKDIGLELKTNFKMTPEQAGKLYKYIVDGIKEQ 60
Query: 210 NDINQSHKDAKE----------------RLAQKTYPKRLKTLLQTLAPKGVEFRKLGEVC 253
NQ K+ K+ + A KT PK+ +T Q PK + +K
Sbjct: 61 IQANQPTKNPKQDNKDDLNTAATPKPLAKKASKT-PKKEETKAQP-KPKKTKEKKKEAPA 118
Query: 254 EILDNRRIPIAKNKRN 269
I+ + I I N
Sbjct: 119 PIIKKKEIEIVNTFEN 134
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 26.9 bits (58), Expect = 1.0
Identities = 12/29 (41%), Positives = 18/29 (61%)
Query: 191 ELKARKKQYEYYQNMLLDFNDINQSHKDA 219
ELK YE N+L +FN++NQ+ +A
Sbjct: 42 ELKKLSDTYENLSNLLTNFNNLNQAVTNA 70
>ref|NP_223833.1| ADP-HEPTOSE--LPS HEPTOSYLTRANSFERASE II [Helicobacter pylori J99]
Length = 349
Score = 26.6 bits (57), Expect = 1.3
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 108 FTFLSKKANCDLALDMKFFFYQCFLLGEWCKNNINVSGFASVDMTAFKKYKFPIPPLEIQ 167
+ K CD+A+ + FY FLL K I + GFA + F + P E
Sbjct: 78 YKLAQKIGRCDIAIALNNHFYSAFLLYA-TKTPIRI-GFAQFFRSLFLSHAITTAPKEYH 135
Query: 168 Q 168
Q
Sbjct: 136 Q 136
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 25.8 bits (55), Expect = 2.3
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 22/103 (21%)
Query: 52 EDIRENGRILKDSIQHITPKALK-GKKLFPKN-SIIISTKATIGEHALLIVDSLANQQFT 109
E IR + LK IQ P K LFPK + T +G++ + V S N T
Sbjct: 387 ETIRHFTQQLKQEIQEYKPPMSKISMDLFPKELGKVEVTIQKVGKNLKVSVISHNNSLQT 446
Query: 110 FLSKKANCDLALDMKFFFYQCFLLGEWCKNNINVSGFASVDMT 152
FL + + KN++N GF VD++
Sbjct: 447 FLDNQQDL--------------------KNSLNALGFEGVDLS 469
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 25.4 bits (54), Expect = 3.0
Identities = 24/73 (32%), Positives = 30/73 (40%), Gaps = 10/73 (13%)
Query: 351 CVAGTPPKINQENLKKIAIPIPPLEIQQE-----IVKILDQFSILTTDLL--AGIPAEIK 403
C+ G PP I QE +K + P LE Q + I F L+ LL G A I
Sbjct: 817 CIIGNPPYIRQEQIKDLK---PLLEKQYQDFYNSTADIYTYFFALSFHLLREKGFSAFIT 873
Query: 404 ARKKQYEYYREKL 416
+ K Y KL
Sbjct: 874 SNKYARAKYGAKL 886
>ref|NP_223004.1| PERIPLASMIC DIPEPTIDE TRANSPORT SUBSTRATE-BINDING PROTEIN
[Helicobacter pylori J99]
Length = 546
Score = 25.4 bits (54), Expect = 3.0
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 217 KDAKERLAQKTYPKRLKTLLQTLA---PKGVEF 246
K AKE L Q YP KT + T + PKG F
Sbjct: 371 KKAKELLKQAGYPNGFKTTIFTTSTRNPKGAVF 403
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 25.0 bits (53), Expect = 3.9
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 167 QQEIVKILDAFTELNTELNTELNTELKARKKQYEYYQNMLLDFNDINQSHKDA 219
Q+EI +D F E + N +L+ KK+ E +QN + DF ++++ DA
Sbjct: 394 QEEIQNKVD-FMEFLAQNNAKLDN---LSKKEKEKFQNEIEDFQKDSKAYLDA 442
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 25.0 bits (53), Expect = 3.9
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 20/99 (20%)
Query: 295 VLVGEDGSVIN----KDNTPVVNWA----SGKIWVNNHAHVLQTKNELKLKFLYFYLQTI 346
V +G D + N + NTP+ + S +++ N+ H+L +LY++
Sbjct: 33 VFLGNDSANFNLLDKETNTPLFEKSPLDSSLELYKNSEIHMLYP-------YLYYFGLGN 85
Query: 347 DVSYCVAGTPPKINQENLKKIAIPIPPLEIQQEIVKILD 385
V Y + + ENLK++ + P +E+ ++ +LD
Sbjct: 86 GVFYRLL-----LGNENLKRLVVIEPEIEVIFIVLNLLD 119
>ref|NP_223915.1| putative [Helicobacter pylori J99]
Length = 123
Score = 24.6 bits (52), Expect = 5.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 17 EFKTLEEVFEIKNGYTPSKNNPEFWKNGTI 46
EF+ E+ EI GY KN P + TI
Sbjct: 85 EFQVQRELLEIYYGYPTQKNKPGIKYDDTI 114
>ref|NP_223179.1| GLUTAMINE SYNTHETASE [Helicobacter pylori J99]
Length = 481
Score = 24.6 bits (52), Expect = 5.0
Identities = 11/27 (40%), Positives = 19/27 (69%), Gaps = 4/27 (14%)
Query: 369 IPIPP----LEIQQEIVKILDQFSILT 391
+P+PP ++I+ EIVK+L+Q + T
Sbjct: 191 MPVPPTDTMMDIRTEIVKVLNQVGLET 217
>ref|NP_223281.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 444
Score = 24.3 bits (51), Expect = 6.6
Identities = 22/101 (21%), Positives = 43/101 (41%), Gaps = 21/101 (20%)
Query: 147 ASVDMTAFKKYKFPIPP-----------LEIQQ------EIVKILDAFTELNT----ELN 185
AS++ T + ++ PP +E QQ E KI T N ++
Sbjct: 167 ASMEKTPIENHEVTPPPNPTQDAQQNSIMETQQDPKELSESCKIAPQKTSFNPVVFKKIK 226
Query: 186 TELNTELKARKKQYEYYQNMLLDFNDINQSHKDAKERLAQK 226
+LN + + E Y+N++ ++D+ + D + +A+K
Sbjct: 227 RKLNLFIGNILARTEAYKNVVAKYDDLTGKYDDLNKNIAEK 267
>ref|NP_222961.1| putative [Helicobacter pylori J99]
Length = 142
Score = 23.9 bits (50), Expect = 8.6
Identities = 21/73 (28%), Positives = 34/73 (45%), Gaps = 13/73 (17%)
Query: 164 LEIQQEIVKILDAFTELNTELNTEL--------NTELK-ARKKQYEYYQ----NMLLDFN 210
LE+QQ ++LD +L+ N EL +LK A + + EYYQ N+ D
Sbjct: 28 LELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALRMEIEYYQQEGENLTKDLK 87
Query: 211 DINQSHKDAKERL 223
+ + + A + L
Sbjct: 88 ILEKDYLLANQEL 100
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.138 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,634
Number of Sequences: 1491
Number of extensions: 23098
Number of successful extensions: 104
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 30
length of query: 431
length of database: 494,079
effective HSP length: 80
effective length of query: 351
effective length of database: 374,799
effective search space: 131554449
effective search space used: 131554449
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)