BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645412|ref|NP_207586.1| polypeptide deformylase
(def) [Helicobacter pylori 26695]
(174 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223447.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylo... 334 9e-94
ref|NP_222961.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_223546.1| putative [Helicobacter pylori J99] 24 2.0
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 23 3.4
ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobact... 23 3.4
ref|NP_223741.1| putative [Helicobacter pylori J99] 23 3.4
ref|NP_223529.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [... 23 4.4
ref|NP_223256.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [... 23 5.7
ref|NP_223179.1| GLUTAMINE SYNTHETASE [Helicobacter pylori ... 23 5.7
ref|NP_223158.1| putative [Helicobacter pylori J99] 23 5.7
ref|NP_224061.1| putative Inner membrane protein [Helicobac... 22 7.5
ref|NP_223787.1| putative [Helicobacter pylori J99] 22 9.8
ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE P... 22 9.8
>ref|NP_223447.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylori J99]
Length = 174
Score = 334 bits (856), Expect = 9e-94
Identities = 169/174 (97%), Positives = 173/174 (99%)
Query: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60
MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI
Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60
Query: 61 INLPQEDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120
INLPQEDGVQHKEDCLEIINPK+IET GS+MYREGCLSVPGFYEEVERFEKVKIEYQNRF
Sbjct: 61 INLPQEDGVQHKEDCLEIINPKWIETKGSIMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120
Query: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQKHE 174
AEVK+LEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQKH+
Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQKHK 174
>ref|NP_222961.1| putative [Helicobacter pylori J99]
Length = 142
Score = 25.0 bits (53), Expect = 1.2
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 85 ETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLN 144
E GG ++ + E+E +++ E +N ++K+LE LLA N
Sbjct: 51 ELGGMSLFLQTQQLKSALRMEIEYYQQ---EGENLTKDLKILEKDYLLA----------N 97
Query: 145 GVLFVDKLSILKRKKFEKELKELQKKQK 172
L K+ + K K+ EKE+ L+KK++
Sbjct: 98 QELEKAKIILEKEKQKEKEI--LEKKEQ 123
>ref|NP_223546.1| putative [Helicobacter pylori J99]
Length = 68
Score = 24.3 bits (51), Expect = 2.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 102 FYEEVERFEKVKIEYQNRFAEVK 124
FY E+ + EK +YQ++ E+K
Sbjct: 11 FYRELGKLEKQLAKYQSKVLEIK 33
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 23.5 bits (49), Expect = 3.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 2 ALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDM 35
AL EII S L + KEV +SK+ + L D+
Sbjct: 778 ALNEIISSYSNSLLELDKEVKESESKVLEHLKDL 811
Score = 22.3 bits (46), Expect = 7.5
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 154 ILKRKKFEKELKELQK 169
++K++ FEKE KEL++
Sbjct: 640 LIKQRFFEKETKELEE 655
>ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobacter pylori J99]
Length = 503
Score = 23.5 bits (49), Expect = 3.4
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 102 FYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFE 161
F +++ K ++E R EV L + Q I + F+D +S+ K FE
Sbjct: 399 FASDLDEASKKQLERGQRMVEVLKQAPYSPLPIEKQVVIIYAGAKGFLDSVSVKKVVDFE 458
Query: 162 KEL 164
++L
Sbjct: 459 EQL 461
>ref|NP_223741.1| putative [Helicobacter pylori J99]
Length = 290
Score = 23.5 bits (49), Expect = 3.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 90 MMYREGCLSVPGFYEE---VERFEKVKIEY 116
+ Y EGC S+ G Y + V R K +EY
Sbjct: 130 LKYAEGCASLGGIYHDGKVVTRDFKKAVEY 159
>ref|NP_223529.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [Helicobacter pylori J99]
Length = 157
Score = 23.1 bits (48), Expect = 4.4
Identities = 10/21 (47%), Positives = 15/21 (70%)
Query: 118 NRFAEVKVLEASELLAVAIQH 138
N +E+K L+ S+ +AVAI H
Sbjct: 130 NITSEIKPLDISDAIAVAITH 150
>ref|NP_223256.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter pylori J99]
Length = 273
Score = 22.7 bits (47), Expect = 5.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 145 GVLFVDKLSILKRKKFEKELKE 166
G FV + S+L +K EK LKE
Sbjct: 165 GASFVARESVLDPQKLEKVLKE 186
>ref|NP_223179.1| GLUTAMINE SYNTHETASE [Helicobacter pylori J99]
Length = 481
Score = 22.7 bits (47), Expect = 5.7
Identities = 21/102 (20%), Positives = 45/102 (43%), Gaps = 4/102 (3%)
Query: 72 KEDCLEIINPKFIETGGS---MMYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEA 128
KE+ +E ++ +F + G+ + Y G L+ F E + F+ + ++
Sbjct: 20 KENEVEFVDFRFSDIKGTWNHIAYSFGALTHDMFKEGIP-FDASSFKGWQGIEHSDMILT 78
Query: 129 SELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKK 170
+L+ I ++ V+F D + K + +EK + + KK
Sbjct: 79 PDLVRYFIDPFSADVSAVVFCDVYDVYKNQPYEKCPRSIAKK 120
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 22.7 bits (47), Expect = 5.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 144 NGVLFVDKLSILKRKKFEKELKELQK 169
NGV + K K+EK L+ELQK
Sbjct: 19 NGVKQASEEIKAKATKYEKALQELQK 44
>ref|NP_224061.1| putative Inner membrane protein [Helicobacter pylori J99]
Length = 549
Score = 22.3 bits (46), Expect = 7.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 152 LSILKRKKFEKELKELQKKQKHE 174
+S+ K K+ ++KELQ+K K E
Sbjct: 379 VSMQKLKELAPKMKELQEKYKGE 401
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 21.9 bits (45), Expect = 9.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 156 KRKKFEKELKELQK 169
K KK E E+KEL+K
Sbjct: 464 KVKKLENEIKELEK 477
>ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE PYROPHOSPHATASE
[Helicobacter pylori J99]
Length = 484
Score = 21.9 bits (45), Expect = 9.8
Identities = 15/58 (25%), Positives = 29/58 (49%), Gaps = 9/58 (15%)
Query: 111 KVKIEYQNRFAEVKVLEA-SELLAVAIQHEIDHLNG--------VLFVDKLSILKRKK 159
K+ +++N F + A S++L + ID L+G + F++K+ +LK K
Sbjct: 189 KLPFKHKNAFGVGGTIRALSKVLMKRFDYPIDSLHGYEIDAHKNLAFIEKIVMLKEDK 246
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.138 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,243
Number of Sequences: 1491
Number of extensions: 7454
Number of successful extensions: 39
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 14
length of query: 174
length of database: 494,079
effective HSP length: 72
effective length of query: 102
effective length of database: 386,727
effective search space: 39446154
effective search space used: 39446154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)