BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645413|ref|NP_207587.1| ATP-dependent clp protease
proteolytic component (clpP) [Helicobacter pylori 26695]
(196 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223448.1| ATP-DEPENDENT PROTEASE, PROTEOLYTIC SUBUNI... 379 e-107
ref|NP_224155.1| putative [Helicobacter pylori J99] 23 4.0
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 23 6.9
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 22 9.0
ref|NP_223709.1| iron-dependent superoxide dismutase [Helic... 22 9.0
>ref|NP_223448.1| ATP-DEPENDENT PROTEASE, PROTEOLYTIC SUBUNIT [Helicobacter pylori
J99]
Length = 195
Score = 379 bits (973), Expect = e-107
Identities = 194/195 (99%), Positives = 195/195 (99%)
Query: 2 MGYIPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDI 61
MGYIPYVIENT+RGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDI
Sbjct: 1 MGYIPYVIENTERGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDI 60
Query: 62 GLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRI 121
GLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRI
Sbjct: 61 GLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRI 120
Query: 122 MIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEA 181
MIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEA
Sbjct: 121 MIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEA 180
Query: 182 KEYGLIDKVLQKNVK 196
KEYGLIDKVLQKNVK
Sbjct: 181 KEYGLIDKVLQKNVK 195
>ref|NP_224155.1| putative [Helicobacter pylori J99]
Length = 256
Score = 23.5 bits (49), Expect = 4.0
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 68 PGGVITSGLSIYDTMNFIRPD--VSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQ 125
P +I SG++IY NF R C A A L + GK + ++R I +
Sbjct: 30 PKELIFSGITIYTDKNFTRAKKYFEKACKSNDADGCAILREVYSSGKAIARENARESIEK 89
Query: 126 PL 127
L
Sbjct: 90 AL 91
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 22.7 bits (47), Expect = 6.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 15 GERSYDIYSRLLKDRIVLLSGEI 37
GE + I +RL++D +V+ +GEI
Sbjct: 880 GEIARGIKARLIRDGVVVHTGEI 902
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 22.3 bits (46), Expect = 9.0
Identities = 9/17 (52%), Positives = 13/17 (75%)
Query: 19 YDIYSRLLKDRIVLLSG 35
Y +Y+R+L+D I LSG
Sbjct: 854 YALYTRMLEDAIYELSG 870
>ref|NP_223709.1| iron-dependent superoxide dismutase [Helicobacter pylori J99]
Length = 213
Score = 22.3 bits (46), Expect = 9.0
Identities = 12/43 (27%), Positives = 20/43 (45%)
Query: 148 KGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKV 190
K + +IL ++SG A+ + DFY K L D++
Sbjct: 49 KSSLFAILTKSSGGVFNNAAQIYNHDFYWDCLSPKATALSDEL 91
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.137 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,439
Number of Sequences: 1491
Number of extensions: 7257
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 5
length of query: 196
length of database: 494,079
effective HSP length: 73
effective length of query: 123
effective length of database: 385,236
effective search space: 47384028
effective search space used: 47384028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)