BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645417|ref|NP_207591.1| molybdenum cofactor
biosynthesis protein C (moaC) [Helicobacter pylori 26695]
         (158 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223452.1|  MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C...   304  8e-85
ref|NP_223194.1|  cag island protein [Helicobacter pylori J99]     24  2.2
ref|NP_222923.1|  putative [Helicobacter pylori J99]               23  2.9
ref|NP_224014.1|  putative TYPE III DNA MODIFICATION ENZYME ...    23  3.8
ref|NP_223029.1|  putative FLAGELLAR BIOSYNTHESIS PROTEIN [H...    23  4.9

>ref|NP_223452.1| MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN C [Helicobacter pylori
           J99]
          Length = 158

 Score =  304 bits (778), Expect = 8e-85
 Identities = 155/158 (98%), Positives = 155/158 (98%)

Query: 1   MPLTHLNEENQPKMVDIGDKETTERIALASGRISMNKEAYDAIINHCVKKGPVLQTAIIA 60
           MPLTHLNEENQPKMVDIGDKETTERIALASGRISMNKEAYDAIINH VKKGPVLQTAIIA
Sbjct: 1   MPLTHLNEENQPKMVDIGDKETTERIALASGRISMNKEAYDAIINHGVKKGPVLQTAIIA 60

Query: 61  GIMGAKKTSELIPMCHPIMLNGVDIDILEEKETCSFKLYARVKTQAKTGVEMEALMSVSI 120
           GIM AKKTSELIPMCHPIMLNGVDIDILEEKETCSFKLYARVKTQAKTGVEMEALMSVSI
Sbjct: 61  GIMAAKKTSELIPMCHPIMLNGVDIDILEEKETCSFKLYARVKTQAKTGVEMEALMSVSI 120

Query: 121 GLLTIYDMVKAIDKSMTISGVMLEHKSGGKSGDYNAKK 158
           GLLTIYDMVK IDKSMTISGVMLEHKSGGKSGDYNAKK
Sbjct: 121 GLLTIYDMVKVIDKSMTISGVMLEHKSGGKSGDYNAKK 158



>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
          Length = 1819

 Score = 23.9 bits (50), Expect = 2.2
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 7   NEENQPKMVDIGDKETTERIALASGRISMNKEAYDAIINH 46
           NE  +    D+ D ET+E+    S +   N+EA +A  NH
Sbjct: 125 NEHQEETQTDLIDDETSEKTQQDSPQDLSNEEATEA--NH 162



>ref|NP_222923.1| putative [Helicobacter pylori J99]
          Length = 368

 Score = 23.5 bits (49), Expect = 2.9
 Identities = 15/56 (26%), Positives = 22/56 (38%), Gaps = 3/56 (5%)

Query: 11 QPKMVDIGDKETTERIALASGRISMNKEAYDAIINHCVKKGPVLQTAIIAGIMGAK 66
          +PK V I D      +      + +  +  DA+I  CV     L    I G+ G K
Sbjct: 45 KPKKVAILDPNDLNNLEPLGAEVFVGLDGIDAMIEECVSN---LVINAIVGVAGLK 97



>ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
           [Helicobacter pylori J99]
          Length = 620

 Score = 23.1 bits (48), Expect = 3.8
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 67  KTSELIPMCHPIMLNGVDIDILEEKETCSFKLYARVKTQAKTGVEMEALMSVSIGLLTIY 126
           K++EL    H I+       +L  K  C F+++ +   Q+    E    +     L+ ++
Sbjct: 121 KSNELF--YHEILHKNEIDTLLSPKALCRFEMHGQGDLQSALKDENTNYLIKGNNLIALH 178

Query: 127 DMVKAIDKSMTISGVMLEHKSGGKSGDYN 155
            + K   K +    +   + +G  S +YN
Sbjct: 179 SLKKKFAKKVKCIYIDPPYNTGNDSFNYN 207



>ref|NP_223029.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
          Length = 180

 Score = 22.7 bits (47), Expect = 4.9
 Identities = 14/43 (32%), Positives = 20/43 (45%)

Query: 9   ENQPKMVDIGDKETTERIALASGRISMNKEAYDAIINHCVKKG 51
           EN  K +   +K   E      G IS +KE  D ++ +  KKG
Sbjct: 129 ENNFKAIAFYEKNHYELEGRLKGFISKDKEFIDVLLYYKDKKG 171



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.315    0.132    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,305
Number of Sequences: 1491
Number of extensions: 5671
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 6
length of query: 158
length of database: 494,079
effective HSP length: 71
effective length of query: 87
effective length of database: 388,218
effective search space: 33774966
effective search space used: 33774966
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)