BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645418|ref|NP_207592.1| molybdopterin biosynthesis
protein (mog) [Helicobacter pylori 26695]
(176 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223453.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helico... 347 8e-98
ref|NP_223885.1| 30S RIBOSOMAL PROTEIN S6 [Helicobacter pyl... 23 3.4
ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE... 23 5.9
ref|NP_223657.1| putative [Helicobacter pylori J99] 23 5.9
ref|NP_222879.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helico... 23 5.9
ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99] 22 7.6
ref|NP_222927.1| putative AMINOTRANSFERASE [Helicobacter py... 22 7.6
ref|NP_223717.1| PROTOPORPHYRINOGEN OXIDASE [Helicobacter p... 22 10.0
>ref|NP_223453.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 176
Score = 347 bits (891), Expect = 8e-98
Identities = 173/176 (98%), Positives = 176/176 (99%)
Query: 1 MQTIHIGVLSASDRASKGIYEDLSGKAIQEVLSEYLLNPLEFYYEIVADERDLIEKSLIK 60
MQTIHIGVLSASDRASKG+YEDLSGKAIQEVLSEYLLNPLEF+YEIVADERDLIEKSLIK
Sbjct: 1 MQTIHIGVLSASDRASKGVYEDLSGKAIQEVLSEYLLNPLEFHYEIVADERDLIEKSLIK 60
Query: 61 MCDEYQCDLVVTTGGTGPALRDITPEATEKVCQKMLPGFGELMRMTSLKYVPTAILSRQS 120
MCDEYQCDLVVTTGGTGPALRDITPEAT+KVCQKMLPGFGELMRMTSLKYVPTAILSRQS
Sbjct: 61 MCDEYQCDLVVTTGGTGPALRDITPEATKKVCQKMLPGFGELMRMTSLKYVPTAILSRQS 120
Query: 121 AGIRNKSLIINLPGKPKSIRECLEAVFPAIPYCVDLILGNYMQVNEKNIQAFRPKQ 176
AGIRNKSLIINLPGKPKSIRECLEAVFPAIPYCVDLILGNYMQVNEKNIQAFRPKQ
Sbjct: 121 AGIRNKSLIINLPGKPKSIRECLEAVFPAIPYCVDLILGNYMQVNEKNIQAFRPKQ 176
>ref|NP_223885.1| 30S RIBOSOMAL PROTEIN S6 [Helicobacter pylori J99]
Length = 142
Score = 23.5 bits (49), Expect = 3.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 31 VLSEYLLNPLEFYYEIVADERDLIEKSL 58
++ E + + +EFY E++ +IE SL
Sbjct: 14 LVEEEIKSKIEFYREVITKHHGVIETSL 41
>ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE [Helicobacter pylori
J99]
Length = 340
Score = 22.7 bits (47), Expect = 5.9
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 25 GKAIQEVLSEYLLNPLEFYYEIV----------ADERDLIEKSLIKMCDEYQCDLVV 71
G Q E+L+ + Y++I A + + K+ +C E+ C+LV+
Sbjct: 240 GYHFQSAAIEHLIQQTKRYFKIKRPKIFGIVGGASQNLALRKAFEDLCAEFDCELVL 296
>ref|NP_223657.1| putative [Helicobacter pylori J99]
Length = 325
Score = 22.7 bits (47), Expect = 5.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 85 PEATEKVCQKMLPGFGEL 102
P+A + VCQK+L EL
Sbjct: 186 PQADDVVCQKVLSNIDEL 203
>ref|NP_222879.1| MOLYBDOPTERIN BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 390
Score = 22.7 bits (47), Expect = 5.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 125 NKSLIINLPGKPKS 138
N+S+II LPG P S
Sbjct: 281 NQSIIIGLPGNPLS 294
>ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99]
Length = 206
Score = 22.3 bits (46), Expect = 7.6
Identities = 15/39 (38%), Positives = 18/39 (45%), Gaps = 7/39 (17%)
Query: 29 QEVLSEYLLNPLEFYYEIVADERDLIEKSLIKMCDEYQC 67
QE+L E LL D ++ IEK LI E QC
Sbjct: 127 QEILKERLLLR-------GTDSKETIEKRLINAYKEMQC 158
>ref|NP_222927.1| putative AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 387
Score = 22.3 bits (46), Expect = 7.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 40 LEFYYEIVADERDLIEKSLIKMCD 63
L++ E+V RD +E++L+K+ D
Sbjct: 261 LDYEKEVVGKLRDKLEEALLKIPD 284
>ref|NP_223717.1| PROTOPORPHYRINOGEN OXIDASE [Helicobacter pylori J99]
Length = 276
Score = 21.9 bits (45), Expect = 10.0
Identities = 9/22 (40%), Positives = 13/22 (58%)
Query: 22 DLSGKAIQEVLSEYLLNPLEFY 43
+L GK + + EYLL +FY
Sbjct: 58 ELVGKRLNDCPIEYLLGSCDFY 79
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.138 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,450
Number of Sequences: 1491
Number of extensions: 6412
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 8
length of query: 176
length of database: 494,079
effective HSP length: 72
effective length of query: 104
effective length of database: 386,727
effective search space: 40219608
effective search space used: 40219608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)