BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645419|ref|NP_207593.1| molybdopterin converting
factor, subunit 2 (moaE) [Helicobacter pylori 26695]
(145 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223454.1| MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 2... 231 6e-63
ref|NP_222869.1| putative [Helicobacter pylori J99] 27 0.17
ref|NP_222918.1| putative [Helicobacter pylori J99] 26 0.50
ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99] 25 0.86
ref|NP_223151.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 1.1
ref|NP_223155.1| putative [Helicobacter pylori J99] 24 1.5
ref|NP_222738.1| putative [Helicobacter pylori J99] 23 4.3
ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN ... 22 5.6
ref|NP_223972.1| putative TRNA (5-METHYLAMINOMETHYL-2-THIOU... 22 5.6
ref|NP_223680.1| putative POLYSACCHARIDE BIOSYNTHESIS PROTE... 22 5.6
ref|NP_223037.1| putative [Helicobacter pylori J99] 22 5.6
ref|NP_223129.1| DIHYDRODIPICOLINATE SYNTHASE [Helicobacter... 22 7.3
ref|NP_223107.1| 7, 8-DIHYDRO-6-HYDROXYMETHYLPTERIN-PYROPHO... 22 7.3
ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicoba... 22 9.5
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 22 9.5
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 22 9.5
>ref|NP_223454.1| MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 2 [Helicobacter pylori
J99]
Length = 145
Score = 231 bits (589), Expect = 6e-63
Identities = 113/145 (77%), Positives = 125/145 (85%)
Query: 1 MLKIIQGALDTRELLKAYQEEACAKNFGAFCVFVGIVRKEDNIQGLSFDIYEALLKTWFE 60
MLKI+QGALDT +LLK YQEEAC KNFGAFCVFVGIVR+E N+QGLSFDIYEALLKTWFE
Sbjct: 1 MLKIVQGALDTDKLLKDYQEEACTKNFGAFCVFVGIVREEGNVQGLSFDIYEALLKTWFE 60
Query: 61 KWHHKAKDLGVVLKMAHSLGDVLIGQSSFLCVSMGKNRKNALELYENFIEDFKHNAPIWK 120
KW H+ KDLGVVLKMAHS+GDVLI SSFLCV MG N KNAL+LYE F ++FK NAPIWK
Sbjct: 61 KWRHQPKDLGVVLKMAHSVGDVLIRHSSFLCVLMGANTKNALKLYEYFFKNFKRNAPIWK 120
Query: 121 YDLIHNKRIYAKERSHPLKGSGLLA 145
L N+RIYAK++ H LKGSGLLA
Sbjct: 121 CYLSDNERIYAKKKDHLLKGSGLLA 145
>ref|NP_222869.1| putative [Helicobacter pylori J99]
Length = 305
Score = 27.3 bits (59), Expect = 0.17
Identities = 13/38 (34%), Positives = 24/38 (62%), Gaps = 2/38 (5%)
Query: 17 AYQEEACAKNFGAFCVFVGIVRKEDNIQGLSFDIYEAL 54
++ + AC+ N+G C FVG + K + +G+ D+ +AL
Sbjct: 157 SFSKYACSLNYGISCNFVGYMYK--SAKGVEKDLKKAL 192
Score = 25.8 bits (55), Expect = 0.50
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 6 QGALDTRELLKAYQEEACAKNFGAFCVFVGIVRKE-DNIQ 44
+GA E +Y ++ CA F C + ++ KE DN+Q
Sbjct: 254 KGAPKDLEKATSYYKKGCALGFSGSCKVLEVIGKESDNLQ 293
>ref|NP_222918.1| putative [Helicobacter pylori J99]
Length = 250
Score = 25.8 bits (55), Expect = 0.50
Identities = 28/115 (24%), Positives = 46/115 (39%), Gaps = 26/115 (22%)
Query: 16 KAYQEEACAKNFGAFCVFVGIVRKEDNIQGLSFDIYEA-----------------LLKTW 58
KA+ E+AC G CVF+G +E +G+ D+ +A LL
Sbjct: 49 KAHFEKACELKEGFGCVFLGAFYEEG--KGVGKDLKKAIQFYTKGCELNDGYGCRLLGNL 106
Query: 59 FEKWHHKAKD-------LGVVLKMAHSLGDVLIGQSSFLCVSMGKNRKNALELYE 106
+ +KD ++ H+ G ++G V K+ + AL+LYE
Sbjct: 107 YYNGQGVSKDAKKASQYYSKSCELNHAEGCTVLGSLHHYGVGTPKDLRKALDLYE 161
>ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99]
Length = 425
Score = 25.0 bits (53), Expect = 0.86
Identities = 19/69 (27%), Positives = 38/69 (54%), Gaps = 8/69 (11%)
Query: 74 KMAHSLGDVLIGQSSFLCVSM-GKNRKNALE---LYENFIEDFKHNA-PIWKYDLIHNKR 128
K+++S+ ++ S + +++ +N++ A E L +NF+ D K+N P+ D I K
Sbjct: 198 KLSYSIEAIIDALGSQISITLVEENKRKAFETKELAQNFLNDLKNNLNPLAFLDAIEQK- 256
Query: 129 IYAKERSHP 137
KE++ P
Sbjct: 257 --DKEKAPP 263
>ref|NP_223151.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 309
Score = 24.6 bits (52), Expect = 1.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 100 NALELYENFIEDFKHNAPIWKYDLIHNKRIYAKER 134
N EL N +DFK P W+Y + + K R
Sbjct: 255 NDCELVRNAYKDFKILEPSWQYTMGQGETRMGKNR 289
>ref|NP_223155.1| putative [Helicobacter pylori J99]
Length = 314
Score = 24.3 bits (51), Expect = 1.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 7 GALDTRELLKAYQEEACAKNFGAFCVFVGI 36
G +D + K Y+E +NF A+ +GI
Sbjct: 138 GKVDEARIKKLYEEVPSYRNFAAYMKTIGI 167
>ref|NP_222738.1| putative [Helicobacter pylori J99]
Length = 469
Score = 22.7 bits (47), Expect = 4.3
Identities = 14/54 (25%), Positives = 24/54 (43%), Gaps = 4/54 (7%)
Query: 7 GALDTRELLKAYQEEACAKNFGAFCVFVGIVRKEDNIQGLSFDIYEALLKTWFE 60
G LD E + A + G +VG DN++ +IYE +L +++
Sbjct: 77 GVLDQAEQRFDKTQSAFTRGAG----YVGATMINDNVRAYGGNIYEGVLINYYK 126
>ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Helicobacter pylori J99]
Length = 457
Score = 22.3 bits (46), Expect = 5.6
Identities = 10/28 (35%), Positives = 16/28 (56%)
Query: 96 KNRKNALELYENFIEDFKHNAPIWKYDL 123
+N K +L YEN++ K+N K D+
Sbjct: 17 QNPKVSLIEYENYLSQLKYNPNASKSDI 44
>ref|NP_223972.1| putative TRNA
(5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
[Helicobacter pylori J99]
Length = 360
Score = 22.3 bits (46), Expect = 5.6
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 24 AKNFGAFCVFVGIVRKEDNIQGLSFDIYEALLKTWFEKWHHKAKDLGVVLKMAHSLGDVL 83
A G + G + I +S+ I EAL KT + + A + V+ K+ LGD+L
Sbjct: 123 ALKLGCEKIATGHYARVKEIDKVSY-IQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLL 181
>ref|NP_223680.1| putative POLYSACCHARIDE BIOSYNTHESIS PROTEIN [Helicobacter pylori
J99]
Length = 389
Score = 22.3 bits (46), Expect = 5.6
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 103 ELYENFIEDFKHNAPIWK 120
++YE I+DFK+N ++K
Sbjct: 369 KVYEEAIKDFKNNPNLFK 386
>ref|NP_223037.1| putative [Helicobacter pylori J99]
Length = 251
Score = 22.3 bits (46), Expect = 5.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 16 KAYQEEACAKNFGAFCVFVG 35
K Y E+AC N+G C +G
Sbjct: 15 KKYFEKACNLNYGGGCGALG 34
>ref|NP_223129.1| DIHYDRODIPICOLINATE SYNTHASE [Helicobacter pylori J99]
Length = 300
Score = 21.9 bits (45), Expect = 7.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 84 IGQSSFLCVSMGKNRKNALELYENF 108
IG + LCVS NR L+E++
Sbjct: 102 IGADAILCVSPYYNRPTQQGLFEHY 126
>ref|NP_223107.1| 7, 8-DIHYDRO-6-HYDROXYMETHYLPTERIN-PYROPHOSPHOKINASE [Helicobacter
pylori J99]
Length = 163
Score = 21.9 bits (45), Expect = 7.3
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 87 SSFLCVSMGKNRKNALELYENFIEDFKHNAPIWK 120
S+ + + +G N KN L++ ++ FK+++ I K
Sbjct: 22 SNRVVLGLGSNLKNPLKILKSCFLYFKNHSKIGK 55
>ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicobacter pylori J99]
Length = 293
Score = 21.6 bits (44), Expect = 9.5
Identities = 19/80 (23%), Positives = 34/80 (41%), Gaps = 6/80 (7%)
Query: 64 HKAKDLGVVLKMAHSLGDVLI----GQSSFLCVSMGKNRKNALELYENFIEDFKHNAPIW 119
HK + + K +H LGD+L+ G+ + + + N + L E F D +
Sbjct: 92 HKKNIILLATKESHCLGDLLLRVYGGELNAQILGVISNHEILRPLVEKF--DIPYFYAPC 149
Query: 120 KYDLIHNKRIYAKERSHPLK 139
++H K + A + LK
Sbjct: 150 VDQILHEKEVLATIKDLELK 169
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 21.6 bits (44), Expect = 9.5
Identities = 7/18 (38%), Positives = 12/18 (65%)
Query: 65 KAKDLGVVLKMAHSLGDV 82
K KD+GV++ H +G +
Sbjct: 1973 KKKDIGVLVDYVHKVGGI 1990
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 21.6 bits (44), Expect = 9.5
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 83 LIGQSSFLCVSMGKNRKNALELYENFIEDFKHN 115
+I Q++ + M N+ +LY F F HN
Sbjct: 51 IIAQTNKPALIMSHNKTLCAQLYSEFKAFFPHN 83
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.323 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,633
Number of Sequences: 1491
Number of extensions: 7792
Number of successful extensions: 31
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 17
length of query: 145
length of database: 494,079
effective HSP length: 70
effective length of query: 75
effective length of database: 389,709
effective search space: 29228175
effective search space used: 29228175
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 44 (21.6 bits)