BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645420|ref|NP_207594.1| molybdopterin converting
factor, subunit 1 (moaD) [Helicobacter pylori 26695]
(74 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223455.1| putative MOLYBDOPTERIN CONVERTING FACTOR, ... 145 2e-37
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 23 1.1
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 23 1.5
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 22 2.5
ref|NP_223847.1| abc transporter, ATP-binding protein [Heli... 22 3.3
ref|NP_223298.1| putative [Helicobacter pylori J99] 21 4.3
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 21 5.6
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 21 5.6
ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 21 5.6
ref|NP_223400.1| putative [Helicobacter pylori J99] 21 5.6
ref|NP_222855.1| putative Cytochrome oxidase (CBB3-TYPE) [H... 21 5.6
ref|NP_223806.1| putative [Helicobacter pylori J99] 20 7.3
ref|NP_223795.1| 30S RIBOSOMAL PROTEIN S16 [Helicobacter py... 20 7.3
ref|NP_223642.1| putative [Helicobacter pylori J99] 20 9.5
ref|NP_223313.1| putative [Helicobacter pylori J99] 20 9.5
ref|NP_223287.1| putative [Helicobacter pylori J99] 20 9.5
ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 20 9.5
>ref|NP_223455.1| putative MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 1 [Helicobacter
pylori J99]
Length = 73
Score = 145 bits (365), Expect = 2e-37
Identities = 70/73 (95%), Positives = 71/73 (96%)
Query: 2 MVEVRFFGPIKEENFFIKANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKD 61
MVEVRFFGPIKEENFFIKAN LKELRAILQEKEGLKEWLGVCAIALNDHLIDNL+ PLKD
Sbjct: 1 MVEVRFFGPIKEENFFIKANGLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLDMPLKD 60
Query: 62 GDVISLLPPVCGG 74
GDVISLLPPVCGG
Sbjct: 61 GDVISLLPPVCGG 73
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 23.1 bits (48), Expect = 1.1
Identities = 17/57 (29%), Positives = 26/57 (44%), Gaps = 13/57 (22%)
Query: 8 FGPIKEENFF--------IKANDLKELRAILQEKEGL-----KEWLGVCAIALNDHL 51
F P K+ NF +A L +A++++ E + K+ LGVC N HL
Sbjct: 322 FNPYKDANFAQSMFANAKAQAEILNRAQAVVKDFERIPAEFVKDSLGVCHEVQNGHL 378
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 22.7 bits (47), Expect = 1.5
Identities = 9/19 (47%), Positives = 12/19 (62%)
Query: 45 IALNDHLIDNLNTPLKDGD 63
+ LN+ + NLN PL GD
Sbjct: 939 VTLNNITLKNLNAPLSFGD 957
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 21.9 bits (45), Expect = 2.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 11 IKEENFFIKANDLKELRAILQEKEGL 36
IK+ F + +L+EL L EKE L
Sbjct: 641 IKQRFFEKETKELEELENALNEKEAL 666
>ref|NP_223847.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 578
Score = 21.6 bits (44), Expect = 3.3
Identities = 12/34 (35%), Positives = 16/34 (46%)
Query: 8 FGPIKEENFFIKANDLKELRAILQEKEGLKEWLG 41
FG +E IK + + L E EGLK +G
Sbjct: 461 FGSAIDEKRLIKVCKMAHIYDFLCEHEGLKTQVG 494
>ref|NP_223298.1| putative [Helicobacter pylori J99]
Length = 150
Score = 21.2 bits (43), Expect = 4.3
Identities = 6/11 (54%), Positives = 11/11 (99%)
Query: 52 IDNLNTPLKDG 62
+DNLN+P+++G
Sbjct: 98 VDNLNSPMQNG 108
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 20.8 bits (42), Expect = 5.6
Identities = 7/13 (53%), Positives = 11/13 (83%)
Query: 52 IDNLNTPLKDGDV 64
I+++ TPLKD D+
Sbjct: 976 IESVGTPLKDWDI 988
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 20.8 bits (42), Expect = 5.6
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 49 DHLIDNLNTPLKDGDVI 65
+HL DN+N +G+++
Sbjct: 1284 NHLTDNINQTFNNGNLV 1300
>ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 815
Score = 20.8 bits (42), Expect = 5.6
Identities = 9/21 (42%), Positives = 11/21 (51%)
Query: 53 DNLNTPLKDGDVISLLPPVCG 73
DN N PL+ + LP CG
Sbjct: 274 DNANRPLRANFTGTFLPYSCG 294
>ref|NP_223400.1| putative [Helicobacter pylori J99]
Length = 327
Score = 20.8 bits (42), Expect = 5.6
Identities = 8/12 (66%), Positives = 10/12 (82%)
Query: 59 LKDGDVISLLPP 70
LK+GD I+LL P
Sbjct: 52 LKEGDAITLLTP 63
>ref|NP_222855.1| putative Cytochrome oxidase (CBB3-TYPE) [Helicobacter pylori J99]
Length = 72
Score = 20.8 bits (42), Expect = 5.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 31 QEKEGLKEWLGVCAIALNDHLIDNLNTP 58
++K+G+ ++ +ALND L D L P
Sbjct: 32 KQKKGIVDYERYGYLALNDALEDELIEP 59
>ref|NP_223806.1| putative [Helicobacter pylori J99]
Length = 193
Score = 20.4 bits (41), Expect = 7.3
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 28 AILQEKEGLKEW 39
A+L+ +EG KEW
Sbjct: 4 ALLRFQEGFKEW 15
>ref|NP_223795.1| 30S RIBOSOMAL PROTEIN S16 [Helicobacter pylori J99]
Length = 76
Score = 20.4 bits (41), Expect = 7.3
Identities = 10/24 (41%), Positives = 13/24 (53%)
Query: 21 NDLKELRAILQEKEGLKEWLGVCA 44
N L E + + +KE L W GV A
Sbjct: 40 NPLSEPKDVRIDKERLNYWKGVGA 63
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 20.0 bits (40), Expect = 9.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 12 KEENFFIKANDLKELRAILQEKEGL 36
K++N IKA D + ++ +QE L
Sbjct: 44 KDKNEVIKAQDNELVKEFMQELSSL 68
>ref|NP_223313.1| putative [Helicobacter pylori J99]
Length = 209
Score = 20.0 bits (40), Expect = 9.5
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 56 NTPLKDGDVISLL 68
N PLKD ++SLL
Sbjct: 101 NYPLKDCSILSLL 113
>ref|NP_223287.1| putative [Helicobacter pylori J99]
Length = 359
Score = 20.0 bits (40), Expect = 9.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 21 NDLKELRAILQEKEGLKE 38
N++K RAIL+ LKE
Sbjct: 240 NEIKVARAILRHSGRLKE 257
>ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 545
Score = 20.0 bits (40), Expect = 9.5
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 11 IKEENFFIKANDLKEL 26
+ +ENF I A+ LKEL
Sbjct: 457 VLKENFPINAHALKEL 472
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.145 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,325
Number of Sequences: 1491
Number of extensions: 3795
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 74
length of database: 494,079
effective HSP length: 50
effective length of query: 24
effective length of database: 419,529
effective search space: 10068696
effective search space used: 10068696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 40 (20.0 bits)