BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645421|ref|NP_207595.1| GTP cyclohydrolase II
(ribA) [Helicobacter pylori 26695]
(192 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223456.1| GTP CYCLOHYDROLASE II [Helicobacter pylori... 380 e-107
ref|NP_223868.1| ASPARTOKINASE 2 ALPHA AND BETA SUBUNITS [H... 26 0.60
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 26 0.60
ref|NP_223937.1| METHIONINE AMINOPEPTIDASE [Helicobacter py... 26 0.79
ref|NP_223062.1| multi-drug resistance protein [Helicobacte... 26 0.79
ref|NP_223076.1| putative RIBOSOMAL PROTEIN L11 METHYLTRANS... 25 1.8
ref|NP_222738.1| putative [Helicobacter pylori J99] 25 1.8
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 24 2.3
ref|NP_223290.1| putative [Helicobacter pylori J99] 24 3.0
ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 5.1
ref|NP_223066.1| putative [Helicobacter pylori J99] 23 5.1
ref|NP_224079.1| BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE... 23 6.7
ref|NP_223158.1| putative [Helicobacter pylori J99] 23 6.7
ref|NP_222868.1| putative lipopolysaccharide biosynthesis p... 23 6.7
ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE ... 22 8.7
ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori ... 22 8.7
ref|NP_222883.1| FRUCTOSE-BISPHOSPHATE ALDOLASE [Helicobact... 22 8.7
>ref|NP_223456.1| GTP CYCLOHYDROLASE II [Helicobacter pylori J99]
Length = 192
Score = 380 bits (975), Expect = e-107
Identities = 187/192 (97%), Positives = 189/192 (98%)
Query: 1 MKRLEVSNQAKLPTQFGEFYIQCFREKGSNGSKDHLVVFTPNFSQNPLVRLHSECLTGDA 60
MKRLEVSNQAKLPTQFGEF IQCFREKGSNGSKDHLV+FTPNF QNPLVRLHSECLTGDA
Sbjct: 1 MKRLEVSNQAKLPTQFGEFCIQCFREKGSNGSKDHLVIFTPNFPQNPLVRLHSECLTGDA 60
Query: 61 LGSQKCDCGGALQMALERISKEGGLVIYLRQEGRGIGLFNKVNAYALQDKGYDTIQANEM 120
LGSQKCDCGGALQMALERISKEGGLVIYLRQEGRGIGLFNKVNAYALQDKGYDTIQANEM
Sbjct: 61 LGSQKCDCGGALQMALERISKEGGLVIYLRQEGRGIGLFNKVNAYALQDKGYDTIQANEM 120
Query: 121 IGFKDDERDYSVAGEILEYYRIKKMRLLTNNPKKIAALEKYAEVTRESLIVCANEHNQGY 180
IGFKDDERDYS+AGEILEYYRIKKMRLLTNNP KIAALEKYAEVTRESLIVCANEHNQGY
Sbjct: 121 IGFKDDERDYSIAGEILEYYRIKKMRLLTNNPLKIAALEKYAEVTRESLIVCANEHNQGY 180
Query: 181 LEVKKLKMGHLL 192
LEVKKLKMGHLL
Sbjct: 181 LEVKKLKMGHLL 192
>ref|NP_223868.1| ASPARTOKINASE 2 ALPHA AND BETA SUBUNITS [Helicobacter pylori J99]
Length = 405
Score = 26.2 bits (56), Expect = 0.60
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 30 NGSKDHLVVFTPNFSQNPLVRLHSECLT-GDALGSQKCDCGGALQMALER 78
+G D L+ F NFS NP R ++ G+ + S AL MALER
Sbjct: 43 SGETDRLLEFGKNFSHNPNKREMDRIVSAGEWISS------AALSMALER 86
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 26.2 bits (56), Expect = 0.60
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 67 DCGGALQMALE---RISKEGGLVIYLRQEGRGIGLFNKVNAYALQDKGYDTIQANEMIGF 123
D A +MAL+ RI+ + G++ + + G+ LF+ VN + G ++Q+ + + +
Sbjct: 78 DNATARKMALDYFKRINDDKGMIYMVVVDKNGVVLFDPVNPKTVGQSGL-SLQSVDGVYY 136
Query: 124 KDDERDYSVAGEILEYYRIKKMRLLTNNPKKIAALEKYAEVTRESLIVCANEH 176
+ + G YY++ K P+K A Y EV++ +++ A +
Sbjct: 137 VRGYLEAAKKGGGYTYYKMPKYD--GGVPEKKFAYSHYDEVSQ--MVIAATSY 185
>ref|NP_223937.1| METHIONINE AMINOPEPTIDASE [Helicobacter pylori J99]
Length = 253
Score = 25.8 bits (55), Expect = 0.79
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 145 MRLLTNNPKKIAALEKYAEVTRESLIVCANEHNQG--YLEVKKL 186
M + +PK+I AL K E+T ++L + E G LE+ K+
Sbjct: 1 MAISIKSPKEIKALRKAGELTAQALALLEREVRPGVSLLELDKM 44
>ref|NP_223062.1| multi-drug resistance protein [Helicobacter pylori J99]
Length = 551
Score = 25.8 bits (55), Expect = 0.79
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 125 DDERDYSVAGEILEYYRIKKMRLLTNNPKKIAALEKYAEVTRESLIVC 172
D+ + SV ILE + + + L+++NP + K+ ++ LI C
Sbjct: 504 DNHTEESVKQSILELKQNRLIILISHNPSTLKLATKHVKLEHGRLIEC 551
>ref|NP_223076.1| putative RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE [Helicobacter
pylori J99]
Length = 329
Score = 24.6 bits (52), Expect = 1.8
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 4 LEVSNQAKLPTQFGEFYIQ-CFREKGSNGSKDHLVVFTP 41
LE QA LP + +FYI + +K S+ + D ++ P
Sbjct: 127 LEAYKQAVLPVRCAKFYIHPSWHQKPSHAAIDDCIMIDP 165
>ref|NP_222738.1| putative [Helicobacter pylori J99]
Length = 469
Score = 24.6 bits (52), Expect = 1.8
Identities = 15/53 (28%), Positives = 24/53 (44%), Gaps = 2/53 (3%)
Query: 140 YRIKKMRLLTNNPKKIAALEKYAEVTRESLIVCANEHNQGYLEVKKLKMGHLL 192
+ +K + +PK I A E + + C+N HN L V+ K G +L
Sbjct: 415 FSLKPCKRSLESPKIIDARELLSGFVTAPQVFCSNRHN--ILYVRSFKNGFVL 465
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 24.3 bits (51), Expect = 2.3
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 141 RIKKMRLLTNNPKKIAALEKYAEVTRESL--IVCANEHNQGYLEVKKLKMGHLL 192
+I+ L N +K+A LEK + +T + L + E Q Y +++ L + L+
Sbjct: 759 KIENTERLQNYAQKLAKLEKVSVITYKPLKSVSDVGEFCQTYADLENLDLSPLI 812
>ref|NP_223290.1| putative [Helicobacter pylori J99]
Length = 683
Score = 23.9 bits (50), Expect = 3.0
Identities = 11/32 (34%), Positives = 18/32 (55%)
Query: 98 LFNKVNAYALQDKGYDTIQANEMIGFKDDERD 129
+F +NA +Q KG D I+ M+G D ++
Sbjct: 196 VFESINATGVQLKGLDLIRNYLMMGENSDNQN 227
>ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 404
Score = 23.1 bits (48), Expect = 5.1
Identities = 14/38 (36%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 18 EFY-IQCFREKGSNGSKDHLVVFTPNFSQNPLVRLHSE 54
EFY I+ ++ GS+ S+DHL F Q+ + L E
Sbjct: 17 EFYTIKRIKDMGSHPSQDHLNELLELFKQDLSIDLKRE 54
>ref|NP_223066.1| putative [Helicobacter pylori J99]
Length = 167
Score = 23.1 bits (48), Expect = 5.1
Identities = 22/93 (23%), Positives = 34/93 (35%), Gaps = 8/93 (8%)
Query: 24 FREKGSNGSKDHLVVFTPNFSQNPLVRLHSECLTGDAL-----GSQKCDCGGALQMALER 78
F+EKG++ K+ + +F N L L E D G +C ++
Sbjct: 31 FKEKGTDFPKEQIFLFPNNQDDGDLETLLLEIAKHDEFLKCFEGYLECIKSKEHYKPIKN 90
Query: 79 ISKEGGLVIYLRQEGRGIGLFNKVNAYALQDKG 111
I K ++Y E G+ K N KG
Sbjct: 91 IRKN---MLYAYLEALGLENLTKTNIDVFDSKG 120
>ref|NP_224079.1| BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE [Helicobacter pylori
J99]
Length = 340
Score = 22.7 bits (47), Expect = 6.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 164 VTRESLIVCANEHNQGYLEVKKLKMGHL 191
VTR+SL+V A EH + +E +++ + L
Sbjct: 250 VTRKSLMVLAKEHLKLKVEEREILIDEL 277
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 22.7 bits (47), Expect = 6.7
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 142 IKKMRLLTN-NPKKIAALEKYAEVTRESLIVCANEHNQGYLEVKKLKMGH 190
+K + LL N +K+A LE A+V+ + + + + + +KK K+ H
Sbjct: 223 VKNLSLLEQANAEKLAKLESEAKVSEQEFLKAKEQEAKRKVALKK-KLEH 271
>ref|NP_222868.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 377
Score = 22.7 bits (47), Expect = 6.7
Identities = 13/56 (23%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 128 RDYSVAGEILEYYRIKKMRLLTNNPKKIAALEKYAEVTRESLIVCANEHNQGYLEV 183
+D+S + + L++++ ++ R P++ +L ++ ++ I+C N +N G+L V
Sbjct: 169 KDFS-SPKSLKHFQTERER----EPRQKFSLYEHYLKEKDMQIICENHYNVGFLIV 219
>ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
Length = 688
Score = 22.3 bits (46), Expect = 8.7
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 17/95 (17%)
Query: 44 SQNPLVRLHSECLTGDALGSQKCDCGGALQMALERISKEGGLVIYLRQEGRGIGLFNKVN 103
++ ++RL SE L + S C G+L + G+ I+ G +G+ ++
Sbjct: 418 NKEQVIRLVSEILESNGSSSMASVCAGSLAL------YASGVEIHDLVAGVAMGMVSERQ 471
Query: 104 AYALQDKGYDTIQANEMIGFKDDE--RDYSVAGEI 136
+A+ +++ G +D E D+ +AG +
Sbjct: 472 DHAI---------LSDISGLEDAEGDMDFKIAGNL 497
>ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori J99]
Length = 675
Score = 22.3 bits (46), Expect = 8.7
Identities = 9/21 (42%), Positives = 14/21 (65%)
Query: 122 GFKDDERDYSVAGEILEYYRI 142
G ++ R YS+ G+ LE+ RI
Sbjct: 569 GLSENIRVYSIVGKYLEHARI 589
>ref|NP_222883.1| FRUCTOSE-BISPHOSPHATE ALDOLASE [Helicobacter pylori J99]
Length = 307
Score = 22.3 bits (46), Expect = 8.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 81 KEGGLVIYLRQEGRGIGLFNKVN 103
K +++ +EG G+G FN VN
Sbjct: 4 KGNEILLKAHKEGYGVGAFNFVN 26
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.137 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,384
Number of Sequences: 1491
Number of extensions: 9182
Number of successful extensions: 35
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 17
length of query: 192
length of database: 494,079
effective HSP length: 73
effective length of query: 119
effective length of database: 385,236
effective search space: 45843084
effective search space used: 45843084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)