BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645427|ref|NP_207601.1| holo-acp synthase (acpS)
[Helicobacter pylori 26695]
(119 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223462.1| HOLO-ACYL CARRIER PROTEIN SYNTHASE [Helico... 219 2e-59
ref|NP_223062.1| multi-drug resistance protein [Helicobacte... 28 0.071
ref|NP_223214.1| GLUTAMATE RACEMASE [Helicobacter pylori J99] 27 0.21
ref|NP_224090.1| putative [Helicobacter pylori J99] 25 0.60
ref|NP_223961.1| RIBONUCLEASE HII [Helicobacter pylori J99] 25 0.60
ref|NP_223333.1| ASPARTATE AMINOTRANSFERASE [Helicobacter p... 24 1.0
ref|NP_223506.1| putative [Helicobacter pylori J99] 23 1.7
ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN... 23 1.7
ref|NP_223286.1| AMINOTRANSFERASE [Helicobacter pylori J99] 23 1.7
ref|NP_223085.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Helic... 23 1.7
ref|NP_223218.1| putative [Helicobacter pylori J99] 23 2.3
ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 23 3.0
ref|NP_223440.1| putative [Helicobacter pylori J99] 23 3.0
ref|NP_223486.1| INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE [He... 22 3.9
ref|NP_223805.1| Flavodoxin [Helicobacter pylori J99] 22 5.1
ref|NP_222975.1| putative [Helicobacter pylori J99] 22 5.1
ref|NP_223025.1| putative [Helicobacter pylori J99] 21 8.7
>ref|NP_223462.1| HOLO-ACYL CARRIER PROTEIN SYNTHASE [Helicobacter pylori J99]
Length = 119
Score = 219 bits (558), Expect = 2e-59
Identities = 113/118 (95%), Positives = 118/118 (99%)
Query: 1 MIGIDIVSIARIEKCVKRFKMKFLERFLSPSEIVLCKDKSSSIAGFFALKEACSKALQVG 60
MIGIDIVSIARIEKCVKRF+M+FLERFLSPSEIVLCKDKSSSIAGFFALKEACSKALQVG
Sbjct: 1 MIGIDIVSIARIEKCVKRFEMRFLERFLSPSEIVLCKDKSSSIAGFFALKEACSKALQVG 60
Query: 61 IGKELSFLDIKISKSPKNAPLITLSKEKMDYFNIQSLSASISHDAGFAIAVVVVSSSN 118
IGKELSFLD++ISKSPKNAPLITLSKEKMDYFNIQSLSASISHDAGFAIAVV+VSSSN
Sbjct: 61 IGKELSFLDMRISKSPKNAPLITLSKEKMDYFNIQSLSASISHDAGFAIAVVMVSSSN 118
>ref|NP_223062.1| multi-drug resistance protein [Helicobacter pylori J99]
Length = 551
Score = 28.1 bits (61), Expect = 0.071
Identities = 17/44 (38%), Positives = 26/44 (58%), Gaps = 3/44 (6%)
Query: 66 SFLDIKISKSPKNAPLITLSKEKMDYFNIQ---SLSASISHDAG 106
+F+ + I K +NA L +L K +MD+FN L A I++D G
Sbjct: 82 NFIGLDIVKKIRNAMLESLLKMEMDFFNRTKKGELIARITNDIG 125
>ref|NP_223214.1| GLUTAMATE RACEMASE [Helicobacter pylori J99]
Length = 255
Score = 26.6 bits (57), Expect = 0.21
Identities = 31/101 (30%), Positives = 47/101 (45%), Gaps = 18/101 (17%)
Query: 16 VKRFKMKFLERFLSPSEIVLCKDKSSSIAGFFALKEA--CSKALQVGIGKELSFLDIKIS 73
+K+F ++ L+ F P EI L + + A AL+E SK VG+ E S L IK
Sbjct: 47 IKQFGLEALD-FFKPHEIELLI-VACNTASALALEEMQKYSKIPIVGV-IEPSILAIKRQ 103
Query: 74 KSPKNAPLITL-------------SKEKMDYFNIQSLSASI 101
KNAP++ L + ++ Y NI L+ S+
Sbjct: 104 VEDKNAPILVLGTKATIQSNAYDNALKQQGYLNISHLATSL 144
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 25.0 bits (53), Expect = 0.60
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 49 LKEACSKALQVGIGKELSFLDIKISKSPKNAPL 81
LKE K L+ K LSF D+ + SP NA L
Sbjct: 473 LKELEKKRLK----KALSFFDLSLKNSPNNALL 501
>ref|NP_223961.1| RIBONUCLEASE HII [Helicobacter pylori J99]
Length = 209
Score = 25.0 bits (53), Expect = 0.60
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 24/124 (19%)
Query: 15 CVKRFKMKFLE------RFLSPSEIVLCKDK--SSSIAGFFALKEACSKALQVGIGKELS 66
C ++ ++FL+ + LSP + +DK + GFF +K++ ++ +G+G +
Sbjct: 29 CNEKIALEFLKMGLKDSKKLSPKKRFFLEDKIKTHGEVGFFVVKKSANEIDHLGLG---A 85
Query: 67 FLDIKISKSPKNAPLITLSKE-KMD----------YFNIQSLSASISHDAGFAIAVVVVS 115
L + I + +N +L+ E K+D Y NIQ++ A A+A V+
Sbjct: 86 CLKLAIEEIVENG--CSLANEIKIDGNTAFGLNKRYPNIQTIIKGDETIAQIAMASVLAK 143
Query: 116 SSNE 119
+S +
Sbjct: 144 ASKD 147
>ref|NP_223333.1| ASPARTATE AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 390
Score = 24.3 bits (51), Expect = 1.0
Identities = 14/52 (26%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
Query: 21 MKFLERFLSPSEIVLCKDKSSSIAGFFALKEACS-KALQVGIGKELSFLDIK 71
M+F L + L K+ + G+ L ACS + ++ GI + F+ K
Sbjct: 338 MRFCHELLEKEGVALVPGKAFGLEGYVRLSFACSEEQIEKGIERIARFVKSK 389
>ref|NP_223506.1| putative [Helicobacter pylori J99]
Length = 313
Score = 23.5 bits (49), Expect = 1.7
Identities = 17/58 (29%), Positives = 25/58 (42%), Gaps = 2/58 (3%)
Query: 55 KALQVGIGKELSFLDIKISKSPKNAPLITLSKEKMDYFNIQSLSASISHDAGFAIAVV 112
K L G + +D++ + L KEK+DY LSA +GF +VV
Sbjct: 233 KRLHASFG--IGVIDLRTDEDKSAILLNAKHKEKIDYTVALELSAKNEKFSGFLKSVV 288
>ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN 2 (HAP2) [Helicobacter
pylori J99]
Length = 685
Score = 23.5 bits (49), Expect = 1.7
Identities = 16/58 (27%), Positives = 28/58 (47%), Gaps = 4/58 (6%)
Query: 48 ALKEACSKALQVGIGKELSFLDIKISKSPKNAPLITLSKEKMDYFNIQSLSASISHDA 105
AL K ++ + K+ + ++IK S P+ TLS DY S ++++ DA
Sbjct: 31 ALIAPLDKKMEQNVEKQKALVEIKTLLSSLKGPVKTLS----DYSTYISRKSNVTGDA 84
>ref|NP_223286.1| AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 375
Score = 23.5 bits (49), Expect = 1.7
Identities = 15/42 (35%), Positives = 22/42 (51%), Gaps = 4/42 (9%)
Query: 63 KELSFLDIKISKSPKNAPLITLSKEKMDYFNIQSLSASISHD 104
KEL +D+ I SP N TLS E++ I + ++ HD
Sbjct: 149 KELQEVDLVILNSPNNPTGRTLSLEEL----IAWVKLALKHD 186
>ref|NP_223085.1| HOLLIDAY JUNCTION DNA HELICASE RUVB [Helicobacter pylori J99]
Length = 336
Score = 23.5 bits (49), Expect = 1.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 18 RFKMKFLERFLSPSEIVLCKDKSSS 42
RF M F +F SPSE+ L K+++
Sbjct: 172 RFGMSFRMQFYSPSELSLIIKKAAA 196
>ref|NP_223218.1| putative [Helicobacter pylori J99]
Length = 227
Score = 23.1 bits (48), Expect = 2.3
Identities = 12/28 (42%), Positives = 17/28 (59%), Gaps = 2/28 (7%)
Query: 32 EIVLCKDKSSSIAGFFALKEACSKALQV 59
EI L K+ + FFALK+AC ++V
Sbjct: 24 EIYLSKEIDKKL--FFALKKACPNIIKV 49
>ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 613
Score = 22.7 bits (47), Expect = 3.0
Identities = 15/68 (22%), Positives = 25/68 (36%)
Query: 49 LKEACSKALQVGIGKELSFLDIKISKSPKNAPLITLSKEKMDYFNIQSLSASISHDAGFA 108
+KE K ++ G GK F + I A + + +N + F
Sbjct: 501 MKETLIKVVRYGTGKNAQFEGLYIGGKTGTARVAKNGSYSAESYNSSFFGFAEDERQVFT 560
Query: 109 IAVVVVSS 116
I VV++ S
Sbjct: 561 IGVVILGS 568
>ref|NP_223440.1| putative [Helicobacter pylori J99]
Length = 184
Score = 22.7 bits (47), Expect = 3.0
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 65 LSFLDIKISKSPKNAPLITLSKEKMDYFNIQSLSA 99
L F+ + +K+P +TLSKE+ N+QS SA
Sbjct: 11 LIFVGVAHAKNP-----LTLSKEEEVLQNLQSFSA 40
>ref|NP_223486.1| INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 481
Score = 22.3 bits (46), Expect = 3.9
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 21 MKFLERFLSPSEIVLCKDKSSSIAGFFALKEACSKALQVGIGKELSFLDIKISKSPKNAP 80
M+ L+R L+ ++++ KSS + +LK +K IG + F+ + ++
Sbjct: 1 MRILQRALTFEDVLMVPRKSSVLPKDVSLKSRLTK----NIGLNIPFISAAMDTVTEHKT 56
Query: 81 LITLSK 86
I +++
Sbjct: 57 AIAMAR 62
>ref|NP_223805.1| Flavodoxin [Helicobacter pylori J99]
Length = 164
Score = 21.9 bits (45), Expect = 5.1
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 71 KISKSPKNAPLITLSKEKMDYFN 93
KISK+ NA +I ++K + FN
Sbjct: 21 KISKAIGNAEVIDVAKASKEQFN 43
>ref|NP_222975.1| putative [Helicobacter pylori J99]
Length = 437
Score = 21.9 bits (45), Expect = 5.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 64 ELSFLDIKISKSPKNAPLITLS 85
ELS LD K + PK A LI ++
Sbjct: 23 ELSKLDYKETSDPKMADLILIN 44
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 21.2 bits (43), Expect = 8.7
Identities = 8/18 (44%), Positives = 13/18 (71%)
Query: 61 IGKELSFLDIKISKSPKN 78
+G+EL FL+ ++K P N
Sbjct: 416 MGEELPFLNEAVAKIPNN 433
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.134 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,136
Number of Sequences: 1491
Number of extensions: 4529
Number of successful extensions: 20
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 17
length of query: 119
length of database: 494,079
effective HSP length: 67
effective length of query: 52
effective length of database: 394,182
effective search space: 20497464
effective search space used: 20497464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)