BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645428|ref|NP_207602.1| hypothetical protein
[Helicobacter pylori 26695]
(183 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223463.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 345 4e-97
ref|NP_224090.1| putative [Helicobacter pylori J99] 35 0.002
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 29 0.067
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 27 0.43
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 26 0.56
ref|NP_223618.1| putative [Helicobacter pylori J99] 26 0.74
ref|NP_223661.1| putative [Helicobacter pylori J99] 25 0.96
ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori ... 25 0.96
ref|NP_223745.1| putative dehydrogenase [Helicobacter pylor... 25 1.6
ref|NP_223176.1| putative [Helicobacter pylori J99] 24 2.8
ref|NP_223065.1| putative [Helicobacter pylori J99] 24 2.8
ref|NP_222747.1| DETHIOBIOTIN SYNTHETASE [Helicobacter pylo... 24 2.8
ref|NP_223187.1| putative cag island protein [Helicobacter ... 23 3.7
ref|NP_223770.1| putative [Helicobacter pylori J99] 23 4.8
ref|NP_223739.1| putative Outer membrane protein [Helicobac... 23 4.8
ref|NP_223737.1| UDP-GLUCOSE 4-EPIMERASE [Helicobacter pylo... 23 4.8
ref|NP_223715.1| putative [Helicobacter pylori J99] 23 4.8
ref|NP_223381.1| putative Outer membrane protein [Helicobac... 23 4.8
ref|NP_223952.1| 50S RIBOSOMAL PROTEIN L22 [Helicobacter py... 23 6.2
ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEI... 23 6.2
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 23 6.2
ref|NP_223639.1| putative [Helicobacter pylori J99] 23 6.2
ref|NP_224151.1| putative [Helicobacter pylori J99] 22 8.2
ref|NP_222950.1| putative histidine kinase sensor protein [... 22 8.2
>ref|NP_223463.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 183
Score = 345 bits (885), Expect = 4e-97
Identities = 182/183 (99%), Positives = 182/183 (99%)
Query: 1 MAEEQENTAQQPPKKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQ 60
MAEEQENTAQQP KKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQ
Sbjct: 1 MAEEQENTAQQPQKKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQ 60
Query: 61 ANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEKLL 120
ANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEKLL
Sbjct: 61 ANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEKLL 120
Query: 121 NEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIKNVFFTDF 180
NEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIKNVFFTDF
Sbjct: 121 NEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIKNVFFTDF 180
Query: 181 IIQ 183
IIQ
Sbjct: 181 IIQ 183
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 34.7 bits (78), Expect = 0.002
Identities = 33/144 (22%), Positives = 71/144 (48%), Gaps = 16/144 (11%)
Query: 16 SKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQANPMANKNQEAKEGS 75
+K L++ +G +L ++ L+ V + LL+G+K+E+K+ + +Q N N+ + +
Sbjct: 58 NKKKLYIALGILLSLIALI-VALSLLLGHKKENKQTS------LQTNTATTNNETPNDTN 110
Query: 76 NIQQYLVLGPLYAIDAPFAVNLVSQNG-RRYLKASISLELSNEKLLNEVKVKDTAIKDTI 134
N + G + +D P +L+ ++ +R ++ + + LL E KD A+ +
Sbjct: 111 NAE---AEGQIENLDLP---DLIGKDSLKRNDESQVDAMMQKASLLYEQGQKDEALH--L 162
Query: 135 IEILSSKSVEEVVTNKGKNKLKDE 158
+ ++S S N G K K++
Sbjct: 163 FDKIASFSQGIASHNLGVIKFKEK 186
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 29.3 bits (64), Expect = 0.067
Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 4/136 (2%)
Query: 40 LLMGNKEESKENASKNTQEVQANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVS 99
L M N+EE +S +Q + P ++ ++ KEG I + + + V S
Sbjct: 974 LTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKE-EIASINRFTLASLVKKYS 1032
Query: 100 QNGRRYLKASISLELSNEKLLNEVKVKDTAI--KDTIIEILSSKSVEEVVTNKGKNKLKD 157
+ + + + + + L +K+L E + +I KD I+ K V+ + K K K+ D
Sbjct: 1033 KEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKLYIATKRKLKVGD 1092
Query: 158 EIKS-HLNSFLIDGFI 172
++ H N ++ +
Sbjct: 1093 KMAGRHGNKGIVSNIV 1108
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 26.6 bits (57), Expect = 0.43
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 25/136 (18%)
Query: 44 NKEESKENASKNTQEVQANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQN-- 101
N +++ ++ QE +N E KE N + L L + P V +S+N
Sbjct: 308 NHPIKEDDLQESPQENPQKENIEENIEEKETQNAPSFSPL-TLTSAKKPVMVKELSENKE 366
Query: 102 ---GRRY--LKASISLELSNEKLLNEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLK 156
G Y ++ EL +LLN V +K+T++ + I+ K++
Sbjct: 367 ILDGLDYGEVQKPKDYELPTTQLLNAVCLKETSLDENEID----------------QKIQ 410
Query: 157 DEIKSHLNSFLIDGFI 172
D + S L +F IDG I
Sbjct: 411 D-LLSKLRTFKIDGDI 425
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 26.2 bits (56), Expect = 0.56
Identities = 30/154 (19%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 14 KKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQANPMAN-KNQEAK 72
K++ F+II ++++ +L++ ++ +++ N + + NT N + N KN A
Sbjct: 293 KEATNTKFIIITTLILGVLVLAFLVFIIISNLITKRISRVNNTLNDFFNLLNNPKNNHAI 352
Query: 73 EGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEKLLNEVKVKDTAIKD 132
+ Y +G + A ++N LK S++ N+ + N ++V +
Sbjct: 353 SLTPPSAYDEIGQMQA-----SIN------ENILKTQESIQADNKAIQNSIEVTNYVENG 401
Query: 133 TIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSF 166
++ + V NK L++ I S + F
Sbjct: 402 DF-----TQEIACVPKNKDLQALRNTINSIIQYF 430
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 25.8 bits (55), Expect = 0.74
Identities = 16/65 (24%), Positives = 26/65 (39%), Gaps = 15/65 (23%)
Query: 111 SLELSNEKLLNEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDG 170
S + S EK L E+K D +KD K KL+ ++ +S ++
Sbjct: 70 SFDYSKEKALEEIKALDLGVKD---------------IEKTYEKLRANLEEEYSSVAVNS 114
Query: 171 FIKNV 175
+K V
Sbjct: 115 VVKKV 119
>ref|NP_223661.1| putative [Helicobacter pylori J99]
Length = 255
Score = 25.4 bits (54), Expect = 0.96
Identities = 15/45 (33%), Positives = 27/45 (59%), Gaps = 1/45 (2%)
Query: 42 MGNKEESKENASKNTQEVQAN-PMANKNQEAKEGSNIQQYLVLGP 85
+G+KE SKENAS + + Q N +++ N+ + +++ Q V P
Sbjct: 125 LGSKEASKENASMSEELTQNNSKLSHFNENSIAQNSVGQNNVKEP 169
>ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
Length = 773
Score = 25.4 bits (54), Expect = 0.96
Identities = 32/134 (23%), Positives = 59/134 (43%), Gaps = 11/134 (8%)
Query: 43 GNKEESKENASKNTQEVQANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNG 102
G K+ K++A K E+ +A K+ + + ++I+ L Y + VN + +
Sbjct: 221 GLKQFVKDSAKK---ELLTPIIAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSE 277
Query: 103 RRYLKASISLELSNEKLL---NEVKVKDTA-----IKDTIIEILSSKSVEEVVTNKGKNK 154
+A + LS L N +K K++ IK+ +I ++S K E + + K+K
Sbjct: 278 GGTHEAGFKMGLSKAILQYIDNNIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSK 337
Query: 155 LKDEIKSHLNSFLI 168
L L S L+
Sbjct: 338 LGSSYARALVSKLV 351
Score = 22.3 bits (46), Expect = 8.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 71 AKEGSNIQQYLVLGPL 86
AK+G+NIQ+Y LG +
Sbjct: 699 AKKGANIQRYKGLGEM 714
>ref|NP_223745.1| putative dehydrogenase [Helicobacter pylori J99]
Length = 227
Score = 24.6 bits (52), Expect = 1.6
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 82 VLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEKLLNEVKVKDTAIKDTIIEILSSK 141
+L L +D + L+S R ++AS E SN KLL++ +++ A+K + +L K
Sbjct: 49 LLQKLSVLDLKWHECLISLVDERIIEASH--EDSNAKLLHDYLLQNNALKASFTPLLPEK 106
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 23.9 bits (50), Expect = 2.8
Identities = 25/115 (21%), Positives = 46/115 (39%), Gaps = 10/115 (8%)
Query: 46 EESKENASKNTQEVQANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRY 105
E K A+K E + + ++ KE ++ L + VN ++ R
Sbjct: 308 ERKKTKATKKAMEFEEREKEHDERDEKETEERRKALEMDK-----GNEKVN--AKENERE 360
Query: 106 LKASISLELSNEKLLNEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIK 160
+ + E S+E N +KDT + E + K + + + K +LK+E K
Sbjct: 361 INQESANEPSSE---NNATLKDTENTSVLKESAAKKEAPKPSSKEEKRRLKEEKK 412
>ref|NP_223065.1| putative [Helicobacter pylori J99]
Length = 381
Score = 23.9 bits (50), Expect = 2.8
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Query: 141 KSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIKNVFF 177
++V ++ +N N+L++E+ HLN F D I+++ F
Sbjct: 200 QAVSKICSN---NQLEEELNKHLNQF--DNNIQSISF 231
>ref|NP_222747.1| DETHIOBIOTIN SYNTHETASE [Helicobacter pylori J99]
Length = 218
Score = 23.9 bits (50), Expect = 2.8
Identities = 12/46 (26%), Positives = 23/46 (49%)
Query: 87 YAIDAPFAVNLVSQNGRRYLKASISLELSNEKLLNEVKVKDTAIKD 132
Y +D A+NL N Y + +EL N++ N + + ++K+
Sbjct: 166 YQLDYKIAINLRGNNTAFYSVSLPYIELFNKRSNNPIVIFQQSLKE 211
>ref|NP_223187.1| putative cag island protein [Helicobacter pylori J99]
Length = 115
Score = 23.5 bits (49), Expect = 3.7
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 19 LLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKN--TQEVQANPMANKNQEAKE 73
++FV IG + + + ++ ++ +K++ K + N TQ+ QA + N+ EAKE
Sbjct: 57 IIFVAIG-IFLSFSNINLVKLVEKLSKKQPKAATTVNNETQKSQAASVTNEPTEAKE 112
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 23.1 bits (48), Expect = 4.8
Identities = 11/31 (35%), Positives = 18/31 (57%)
Query: 46 EESKENASKNTQEVQANPMANKNQEAKEGSN 76
+E A K +QEVQAN + ++Q ++ N
Sbjct: 85 QEESLRALKASQEVQANTLKQQSQTLEDLRN 115
>ref|NP_223739.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 511
Score = 23.1 bits (48), Expect = 4.8
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 17 KALLFVIIGSVLVMLLLVGVIIMLLMGNK-----EESKENASKNTQEVQANPMANKNQEA 71
K LL+ ++ +L+ LL +I+ GNK E K N ++ V+ + + +
Sbjct: 2 KKLLYTMLALLLIGLLTAYLILFTEWGNKIIASYIEKKINPNERYLSVKTFKLRFNSLDF 61
Query: 72 KEGSNIQQYLVL 83
K +N L+L
Sbjct: 62 KAQANDDSTLIL 73
>ref|NP_223737.1| UDP-GLUCOSE 4-EPIMERASE [Helicobacter pylori J99]
Length = 344
Score = 23.1 bits (48), Expect = 4.8
Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 68 NQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEKLLNEVKVKD 127
N ++G+ I+ Y+ + L L+ +N + S ++++ KVK+
Sbjct: 228 NYPTRDGTCIRDYIHVDDLANAHLASYHTLLEKNKSEIYNVGYNQGHSVKEVIE--KVKE 285
Query: 128 TAIKDTIIEILSSKSVE--EVVTNKGKNKLKDEIKSHLNSFLIDGFIKN 174
+ KD ++EIL + + ++ N K K N+ +D IK+
Sbjct: 286 ISNKDFLVEILDKRQGDPASLIANNSKILQNTPFKPLYNN--LDTIIKS 332
>ref|NP_223715.1| putative [Helicobacter pylori J99]
Length = 174
Score = 23.1 bits (48), Expect = 4.8
Identities = 19/64 (29%), Positives = 31/64 (47%), Gaps = 6/64 (9%)
Query: 23 IIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQ---EVQANPMANKNQEAKEGSNIQQ 79
+I L LLLVGV++ L +K N +NTQ + A+ +A E S+++
Sbjct: 10 LIVYTLSTLLLVGVLLALFF---FYAKNNLLENTQIRMQYTADAIAKSLLELNNASSLEP 66
Query: 80 YLVL 83
+L
Sbjct: 67 LKIL 70
>ref|NP_223381.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 305
Score = 23.1 bits (48), Expect = 4.8
Identities = 15/60 (25%), Positives = 24/60 (40%)
Query: 72 KEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEKLLNEVKVKDTAIK 131
K G N+ +G A D + L Y KA + ++ LL++ +AIK
Sbjct: 81 KGGKNLSYTGQIGDEIAFDKYHILGLRVWGDVEYAKAQLGQKVGGNTLLSQANYNPSAIK 140
>ref|NP_223952.1| 50S RIBOSOMAL PROTEIN L22 [Helicobacter pylori J99]
Length = 122
Score = 22.7 bits (47), Expect = 6.2
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 16 SKALL-FVIIGSVLVMLL---LVGVIIMLLMGNKEESKENASKNTQEVQANPMANKNQEA 71
SKALL FV + L+ + G+ L + + E + A++ +V A+ +AN + +A
Sbjct: 2 SKALLKFVRLSPTKARLIARQIQGMNAELAIASLEFTPNKAARVLSKVVASAVANGSLDA 61
Query: 72 KEGSNIQQYLVLGPLYAIDAPFA 94
K + + GP+ P A
Sbjct: 62 KSALIVSCRVDAGPVLRRSIPRA 84
>ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR [Helicobacter
pylori J99]
Length = 277
Score = 22.7 bits (47), Expect = 6.2
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 135 IEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIKNVF 176
I L K V KG KL + + + ++S + F+K +
Sbjct: 216 ITSLGDKDVIAPAIKKGNPKLLEWLNNEIDSLISSDFLKEAY 257
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 22.7 bits (47), Expect = 6.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 45 KEESKENASKNTQEVQAN 62
KE KEN K +EV+AN
Sbjct: 149 KEVKKENKEKAKEEVKAN 166
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 22.7 bits (47), Expect = 6.2
Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 117 EKLLNEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFL 167
E+ L E K D K + ++ + +EE V K K + K + + LN FL
Sbjct: 16 EERLKE-KYGDDWEKHVKAKAINEEELEEQVKAKAKEQQKTQREKTLNGFL 65
>ref|NP_224151.1| putative [Helicobacter pylori J99]
Length = 307
Score = 22.3 bits (46), Expect = 8.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 85 PLYAIDAPFAVNLVSQNGRRYLK 107
PLY +P L+ +N R Y K
Sbjct: 269 PLYIQKSPTTTKLLQKNSRDYFK 291
>ref|NP_222950.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 381
Score = 22.3 bits (46), Expect = 8.2
Identities = 11/46 (23%), Positives = 20/46 (42%)
Query: 135 IEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIKNVFFTDF 180
+E K E+++ N K E+ LN F++ + F D+
Sbjct: 39 LENFKPKESEDLLENFSNKKDMQELLELLNQFILQSYKVEKEFKDY 84
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.313 0.131 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,039
Number of Sequences: 1491
Number of extensions: 8493
Number of successful extensions: 48
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 25
length of query: 183
length of database: 494,079
effective HSP length: 72
effective length of query: 111
effective length of database: 386,727
effective search space: 42926697
effective search space used: 42926697
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)