BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645429|ref|NP_207603.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(200 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223464.1| putative [Helicobacter pylori J99] 370 e-104
ref|NP_223055.1| putative [Helicobacter pylori J99] 37 3e-04
ref|NP_224157.1| RIBULOSE-PHOSPHATE 3-EPIMERASE [Helicobact... 28 0.13
ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (... 27 0.38
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 27 0.49
ref|NP_223645.1| putative [Helicobacter pylori J99] 27 0.49
ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori... 25 1.4
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 24 2.4
ref|NP_224054.1| putative [Helicobacter pylori J99] 24 2.4
ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 24 2.4
ref|NP_223965.1| putative [Helicobacter pylori J99] 23 5.4
ref|NP_223270.1| putative [Helicobacter pylori J99] 23 5.4
ref|NP_222765.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 5.4
ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ... 23 7.1
ref|NP_223175.1| putative [Helicobacter pylori J99] 23 7.1
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 22 9.3
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 9.3
ref|NP_222914.1| putative [Helicobacter pylori J99] 22 9.3
ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrop... 22 9.3
>ref|NP_223464.1| putative [Helicobacter pylori J99]
Length = 200
Score = 370 bits (951), Expect = e-104
Identities = 187/200 (93%), Positives = 191/200 (95%)
Query: 1 MPNHQPVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSG 60
MPNHQPVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQ EINGAHFIEVFSG
Sbjct: 1 MPNHQPVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQTEINGAHFIEVFSG 60
Query: 61 SASMGLEALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTL 120
SASMGLEALSRGAKSAVFFEQNK+AY TLLENISLFKNRLKKE+EIQTFLDDAFKLLPTL
Sbjct: 61 SASMGLEALSRGAKSAVFFEQNKNAYATLLENISLFKNRLKKEIEIQTFLDDAFKLLPTL 120
Query: 121 CLKNGVLNIIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSL 180
LKNGVLNIIYLDPPFETSGFLGIYEKCF ALERLL R + KNL VVFEHES+HEMPKSL
Sbjct: 121 RLKNGVLNIIYLDPPFETSGFLGIYEKCFHALERLLNRSHSKNLFVVFEHESLHEMPKSL 180
Query: 181 VTLAIIKQKKFGKTTLTYFQ 200
TLAIIKQKKFGKTTLTYFQ
Sbjct: 181 ATLAIIKQKKFGKTTLTYFQ 200
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 37.4 bits (85), Expect = 3e-04
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 87 KTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNI--IYLDPPFETSGFLGI 144
K +LE + LF+N +E +FL D F L + C+K L+ IYLD
Sbjct: 77 KFILEGLLLFENSFLGYLESTSFLFDLFDELSSACIKLNELSFKDIYLD----------- 125
Query: 145 YEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSL 180
YEK + LE + R+ K + F + M + P L
Sbjct: 126 YEKHLEVLEMIYDRYVKKLEELGFYDKIMQKKPTIL 161
Score = 22.3 bits (46), Expect = 9.3
Identities = 15/62 (24%), Positives = 31/62 (49%), Gaps = 3/62 (4%)
Query: 86 YKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNIIYLDPPFETSGFLGIY 145
Y+ LE + + +R K++E F D + PT+ LK + ++ + GF+ ++
Sbjct: 126 YEKHLEVLEMIYDRYVKKLEELGFYDKIMQKKPTI-LKEFFEHFSSIE--WHLDGFMSVF 182
Query: 146 EK 147
E+
Sbjct: 183 ER 184
>ref|NP_224157.1| RIBULOSE-PHOSPHATE 3-EPIMERASE [Helicobacter pylori J99]
Length = 217
Score = 28.5 bits (62), Expect = 0.13
Identities = 17/44 (38%), Positives = 27/44 (60%), Gaps = 2/44 (4%)
Query: 125 GVLNIIYLDPPFETSGFLG-IYEKCFQALERLLKRFNPKNLLVV 167
G++ ++ ++P F FL + EKC + E L+KR+NP LL V
Sbjct: 128 GLVLLMSVNPGFGGQKFLDLVLEKCLKVKE-LIKRYNPSCLLEV 170
>ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 343
Score = 26.9 bits (58), Expect = 0.38
Identities = 15/36 (41%), Positives = 22/36 (60%), Gaps = 2/36 (5%)
Query: 111 DDAFKLLPTLCLKN--GVLNIIYLDPPFETSGFLGI 144
++A LL L KN G +++IY+DPPF T+ I
Sbjct: 9 ENAIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTI 44
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 26.6 bits (57), Expect = 0.49
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 65 GLEALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKN 124
GL+ + + F++N K L E+ S K + I+ DA K+L +
Sbjct: 59 GLDFVGKKIALNQAFKKNHKILKPLNESTS-------KHILIKGDNLDALKILKQSYSEK 111
Query: 125 GVLNIIYLDPPFETSGFLGIYEKCF-QALERLLK 157
+ +IY+DPP+ T IY F Q+ E +LK
Sbjct: 112 --IKMIYIDPPYNTKNDNFIYGDDFSQSNEEVLK 143
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 26.6 bits (57), Expect = 0.49
Identities = 21/73 (28%), Positives = 39/73 (52%), Gaps = 6/73 (8%)
Query: 69 LSRGAKSAVFFE--QNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLK-NG 125
L + + +F++ Q K + K +LE + +NRLKK +E +AF +L + + N
Sbjct: 279 LLKDPTTKIFYDKFQLKISPKKVLE---ILENRLKKSIETTNETLNAFNVLDSQAIDLNA 335
Query: 126 VLNIIYLDPPFET 138
+ N + L+P E+
Sbjct: 336 ISNSVGLNPTQES 348
>ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori J99]
Length = 519
Score = 25.0 bits (53), Expect = 1.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 13 IGGACKGLGLNLPNISSTRPTKAIVRESFFNTL 45
I K L LNL N+ P + RE F +L
Sbjct: 246 INSQAKNLNLNLENVEIINPNTSHYREEFAKSL 278
Score = 23.9 bits (50), Expect = 3.2
Identities = 15/51 (29%), Positives = 24/51 (46%), Gaps = 4/51 (7%)
Query: 2 PNHQPVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRE---SFFNTLQAEI 49
P +Q + F I G C+G G ++SS AI ++ +T Q E+
Sbjct: 27 PRYQKIALFSPISGGCEGFG-ECESLSSLEVHSAIDKQKALELVSTAQEEL 76
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 24.3 bits (51), Expect = 2.4
Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 116 LLPTLCLKNGVLNIIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHE 175
L P+ +K GVL I + F S + + + ++ +ER + N K ++V + ++
Sbjct: 110 LAPSNAIKLGVLKSIEITREFFKSEYSNTHLESYEDVERFILASNHKCCVLVMTFSAFNK 169
Query: 176 MPKSLVTLAIIKQKKFGKTTLTYFQ 200
K+ + + ++ +Y Q
Sbjct: 170 -EKNTINQSCLENTNLFNGAKSYMQ 193
>ref|NP_224054.1| putative [Helicobacter pylori J99]
Length = 274
Score = 24.3 bits (51), Expect = 2.4
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 29/107 (27%)
Query: 83 KSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNIIYLDPPFETSGFL 142
+ AY ++ + L KN+LK + ++ L + LK D P E +
Sbjct: 21 EGAYHKIISRMCLVKNKLKDIISVKNAL--------SFSLKGD------FDCPLEENSL- 65
Query: 143 GIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLVTLAIIKQK 189
F+AL+ L K KN H + KSL TLAI +K
Sbjct: 66 ------FKALQVLKKFLVQKNF--------SHSVIKSLDTLAIEVEK 98
>ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 632
Score = 24.3 bits (51), Expect = 2.4
Identities = 11/29 (37%), Positives = 16/29 (54%)
Query: 146 EKCFQALERLLKRFNPKNLLVVFEHESMH 174
E+ LE+ +R +PK +V HES H
Sbjct: 410 ERGIAGLEKKSRRISPKEKKIVAYHESGH 438
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 23.1 bits (48), Expect = 5.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 79 FEQNKSAYKTLLENISLFKNRLKKEMEIQTFL 110
F++ + + L + LF L K++EIQTF+
Sbjct: 8 FDKRGVSIRLLTALLLLFSLGLAKDLEIQTFV 39
>ref|NP_223270.1| putative [Helicobacter pylori J99]
Length = 477
Score = 23.1 bits (48), Expect = 5.4
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 59 SGSASMGLEALSRGAKSAVFFEQNKSAYKTLLENISL--------------FKNRLKKEM 104
S A++GL L +GA + + + + + K ++N ++ FKN +
Sbjct: 80 SDKAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNASYNFKNEARDTP 139
Query: 105 EIQTFLDDAFKLLPTLCLKNGVLNI 129
E + + + TL + NG N+
Sbjct: 140 EYKHYNTQQLQAQVTLNVFNGFSNV 164
>ref|NP_222765.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 230
Score = 23.1 bits (48), Expect = 5.4
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 18/81 (22%)
Query: 106 IQTFLDDAFKLLPTLCLKNGVLNIIYLDPPFETS---GF------------LGIYEKCFQ 150
IQ +AF+++ +N ++ I DPP+ S F G ++K F+
Sbjct: 2 IQIHHANAFEIIKDFHQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFK 61
Query: 151 ALE---RLLKRFNPKNLLVVF 168
LE R NP +V+F
Sbjct: 62 LLEWIARYASLINPNGCMVIF 82
>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
J99]
Length = 619
Score = 22.7 bits (47), Expect = 7.1
Identities = 13/40 (32%), Positives = 18/40 (44%)
Query: 150 QALERLLKRFNPKNLLVVFEHESMHEMPKSLVTLAIIKQK 189
+AL RL R+ P ++FE PK L L + K
Sbjct: 278 KALVRLKGRYTPTQKNIIFEKTERFITPKLLEALKQVIDK 317
>ref|NP_223175.1| putative [Helicobacter pylori J99]
Length = 212
Score = 22.7 bits (47), Expect = 7.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 148 CFQALERLLKRFNPKNLLVVFEHESMHEMPKSLVTL 183
C +ALE + +PKNL + + S + SL TL
Sbjct: 116 CEEALEECGYQISPKNLETIGQFYSATGLSGSLQTL 151
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 22.3 bits (46), Expect = 9.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 72 GAKSAVFFEQNKSAYKTLLENISLFKNRLKKEM 104
G+K+A Q + + + EN+ L KN L +M
Sbjct: 198 GSKNAKELLQRLGSLEKIYENLDLAKNLLSPKM 230
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 22.3 bits (46), Expect = 9.3
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 127 LNIIYLDPPFET 138
++ IY+DPPF T
Sbjct: 271 IDCIYIDPPFNT 282
>ref|NP_222914.1| putative [Helicobacter pylori J99]
Length = 368
Score = 22.3 bits (46), Expect = 9.3
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 16/74 (21%)
Query: 20 LGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALSRGAKSAVFF 79
LGL + SS+ T AI+RE+ +Q + G++AL+ K+
Sbjct: 39 LGLLIEIPSSSEETSAILRENISKAMQEK----------------GVKALNLDIKTPPKP 82
Query: 80 EQNKSAYKTLLENI 93
+ K K L +NI
Sbjct: 83 QAPKPTTKNLAKNI 96
>ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrophosphorylase
[Helicobacter pylori J99]
Length = 470
Score = 22.3 bits (46), Expect = 9.3
Identities = 14/43 (32%), Positives = 23/43 (52%), Gaps = 6/43 (13%)
Query: 155 LLKRFNPKNLLVVFEHESMHEMP----KSLV--TLAIIKQKKF 191
L + PK L +F+H+S+ E+ SLV TL + +K +
Sbjct: 19 LSRSLYPKQFLKLFDHKSLFELSFKRNASLVDETLIVCNEKHY 61
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.138 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,613
Number of Sequences: 1491
Number of extensions: 9661
Number of successful extensions: 49
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 22
length of query: 200
length of database: 494,079
effective HSP length: 73
effective length of query: 127
effective length of database: 385,236
effective search space: 48924972
effective search space used: 48924972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)