BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645430|ref|NP_207604.1| hypothetical protein
[Helicobacter pylori 26695]
(108 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223465.1| putative [Helicobacter pylori J99] 215 3e-58
ref|NP_223870.1| putative DNA poymerase III subunit delta' ... 28 0.058
ref|NP_223617.1| putative [Helicobacter pylori J99] 27 0.17
ref|NP_222887.1| sialic acid synthase [Helicobacter pylori ... 26 0.22
ref|NP_222954.1| putative [Helicobacter pylori J99] 25 0.49
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 24 1.1
ref|NP_224074.1| putative [Helicobacter pylori J99] 24 1.1
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 23 1.9
ref|NP_222748.1| putative [Helicobacter pylori J99] 23 1.9
ref|NP_222726.1| Carbonic anhydrase [Helicobacter pylori J99] 23 1.9
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 23 2.4
ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter py... 22 3.2
ref|NP_223055.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_222827.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_223270.1| putative [Helicobacter pylori J99] 22 4.1
ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 22 4.1
ref|NP_222955.1| putative [Helicobacter pylori J99] 22 4.1
ref|NP_223231.1| DIAMINOPIMELATE EPIMERASE [Helicobacter py... 22 5.4
ref|NP_223275.1| putative [Helicobacter pylori J99] 21 7.0
ref|NP_223243.1| putative [Helicobacter pylori J99] 21 7.0
ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicob... 21 7.0
ref|NP_223030.1| putative tetraacyldisaccharide-1-P 4'-kina... 21 7.0
ref|NP_222912.1| putative [Helicobacter pylori J99] 21 7.0
ref|NP_222895.1| putative [Helicobacter pylori J99] 21 7.0
ref|NP_224155.1| putative [Helicobacter pylori J99] 21 9.2
ref|NP_223712.1| putative [Helicobacter pylori J99] 21 9.2
>ref|NP_223465.1| putative [Helicobacter pylori J99]
Length = 108
Score = 215 bits (547), Expect = 3e-58
Identities = 106/108 (98%), Positives = 107/108 (98%)
Query: 1 MKIFLSCKSLLIQRSLEFYLSDCLSPMEVCDLVLSDDEKLETNKPLCFIEERLRKPFTKQ 60
MKIFLSCKSLLIQRSLEFYLSDCLSP+EVCDLVLSDDEKLETNKPLCFIEERLRKPFTKQ
Sbjct: 1 MKIFLSCKSLLIQRSLEFYLSDCLSPVEVCDLVLSDDEKLETNKPLCFIEERLRKPFTKQ 60
Query: 61 SVKEDIKNFYRALKTSEKPCEEIQFSKEQKIKQLLEEYTHKLCQIISQ 108
SVKEDIKNFYRALK SEKPCEEIQFSKEQKIKQLLEEYTHKLCQIISQ
Sbjct: 61 SVKEDIKNFYRALKISEKPCEEIQFSKEQKIKQLLEEYTHKLCQIISQ 108
>ref|NP_223870.1| putative DNA poymerase III subunit delta' [Helicobacter pylori J99]
Length = 218
Score = 28.1 bits (61), Expect = 0.058
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 26 PMEVCDLVL--SDDEKLETNKPLCFIEERLRK----PFTKQSVKEDIKNFYRALKTSEKP 79
P VC ++ S + L T K E++ +K P K D+K+ Y LK +K
Sbjct: 94 PNNVCFIMFAKSPNHVLATIKSRLIKEDKRQKIPLKPLDLDLSKLDLKDIYAFLKNLDKE 153
Query: 80 CEEIQFSKEQKIKQLLEE-YTHKL 102
+ + ++ ++I+ LLE + HK+
Sbjct: 154 NFDSRENQRERIESLLESIHRHKI 177
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 26.6 bits (57), Expect = 0.17
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 49 IEERLRKPFTKQSV----KEDIKNFYRALKTSEKPCEEIQFSKEQKIKQLLEEYT 99
+EE ++K KQS+ KE I+N + K EEI+ E+ K LE+ T
Sbjct: 132 VEEEVKKQKEKQSLSNRAKEGIRNVGNKMLGRNKSDEEIEKRAERIAKNELEKDT 186
>ref|NP_222887.1| sialic acid synthase [Helicobacter pylori J99]
Length = 340
Score = 26.2 bits (56), Expect = 0.22
Identities = 14/47 (29%), Positives = 20/47 (41%)
Query: 35 SDDEKLETNKPLCFIEERLRKPFTKQSVKEDIKNFYRALKTSEKPCE 81
+D KL+T P C + PF Q D +N Y + + P E
Sbjct: 34 ADFVKLQTYTPSCMTLDSKEDPFIIQGTLWDKENLYGLYQKASTPLE 80
>ref|NP_222954.1| putative [Helicobacter pylori J99]
Length = 362
Score = 25.0 bits (53), Expect = 0.49
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 43 NKPLCFIEERLRKPFTKQSVKEDIKNFYRALKTSEKPCEEIQFSKEQKIKQ 93
N P+ +LR+ +KE I+ A + SE+ E++ SK++ KQ
Sbjct: 215 NTPVELSSIQLREIVLPAKIKEQIEKVQIARQESERVKYEVERSKQEAQKQ 265
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 23.9 bits (50), Expect = 1.1
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 51 ERLRKPFTKQSVKEDIKNFYRALKTSEKPCEEIQFSKEQKIKQLLEEYTH 100
E L FTK++ E + LK +K E + K Q I + LEE H
Sbjct: 38 EILTLTFTKKATAEMKERILDYLKILQKENLESEKEKSQNILKELEEKYH 87
>ref|NP_224074.1| putative [Helicobacter pylori J99]
Length = 225
Score = 23.9 bits (50), Expect = 1.1
Identities = 15/43 (34%), Positives = 19/43 (43%)
Query: 4 FLSCKSLLIQRSLEFYLSDCLSPMEVCDLVLSDDEKLETNKPL 46
F S +LL+Q L L L + DL S E + KPL
Sbjct: 11 FSSALALLLQGCLSINLKQMLPEIRTYDLNASSFEMTQCPKPL 53
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 23.1 bits (48), Expect = 1.9
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 62 VKEDIKNFYRALKTSEK 78
+K+DI+ Y+ALK+S++
Sbjct: 219 IKKDIQKGYKALKSSQR 235
>ref|NP_222748.1| putative [Helicobacter pylori J99]
Length = 565
Score = 23.1 bits (48), Expect = 1.9
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 53 LRKPFTKQSVKEDIKNFYRALKTSEKPCEEIQFSKE------QKIKQLLEEYTHKL 102
L KPF + + + + +SEK ++ +F+++ Q++K LL++ H L
Sbjct: 170 LGKPFVNKFLNPKSETTMKDFMSSEKFVKKYRFTQKDNIKRTQELKSLLDQKRHFL 225
>ref|NP_222726.1| Carbonic anhydrase [Helicobacter pylori J99]
Length = 221
Score = 23.1 bits (48), Expect = 1.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 64 EDIKNFYRALKTSEKP 79
E+ K Y +LKT +KP
Sbjct: 16 EEFKELYESLKTKQKP 31
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 22.7 bits (47), Expect = 2.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 31 DLVLSDDEKLETNKPLCFIEERLRKP 56
++ L+D++KL PL F + KP
Sbjct: 127 NITLNDEKKLSLKTPLTFYYSKRLKP 152
>ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 920
Score = 22.3 bits (46), Expect = 3.2
Identities = 11/34 (32%), Positives = 17/34 (49%), Gaps = 5/34 (14%)
Query: 48 FIEERLRKPFTKQSVKEDIKNFYRALKTSEKPCE 81
FI++R KP + V E + N + EK C+
Sbjct: 481 FIDKRTNKPCFESEVLEHVANLF-----EEKGCD 509
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 22.3 bits (46), Expect = 3.2
Identities = 11/41 (26%), Positives = 20/41 (47%)
Query: 23 CLSPMEVCDLVLSDDEKLETNKPLCFIEERLRKPFTKQSVK 63
C+ ++ CDL L+ + N P ++ L+K + Q K
Sbjct: 429 CVPNLKDCDLFLNSALRQSLNLPTLLDKKNLQKHYYYQLFK 469
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 22.3 bits (46), Expect = 3.2
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 13/72 (18%)
Query: 38 EKLETNKPLCFIEERLRKPFTKQSVKEDIKNFYRALKTSEKPCEE-IQFSKEQKIKQLLE 96
EK++ +KP + + + QS E KN LK ++K CEE I+++ E+K + +E
Sbjct: 462 EKIDKSKP----KPPINLIYPTQS--EQAKN----LKIAKKKCEEIIKYANEKKTQ--VE 509
Query: 97 EYTHKLCQIISQ 108
E K+ + + +
Sbjct: 510 EAFLKVAEFLEK 521
>ref|NP_223270.1| putative [Helicobacter pylori J99]
Length = 477
Score = 21.9 bits (45), Expect = 4.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 90 KIKQLLEEYTHKLCQII 106
+IKQ+L Y+HK ++I
Sbjct: 29 EIKQILNNYSHKNLKLI 45
>ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 632
Score = 21.9 bits (45), Expect = 4.1
Identities = 10/51 (19%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 48 FIEERLRKPFTKQSVKEDIKNFYRALKTSEKPCEEIQFSKEQKIKQLLEEY 98
FI+ L + + Q VK+ + ++ A++ K + + +++++++ EY
Sbjct: 566 FIKNLLEERY--QHVKQTLSDYREAIEIMVKELFDKEVITGERVREIISEY 614
>ref|NP_222955.1| putative [Helicobacter pylori J99]
Length = 179
Score = 21.9 bits (45), Expect = 4.1
Identities = 15/51 (29%), Positives = 23/51 (44%), Gaps = 12/51 (23%)
Query: 17 EFYLSDCLSPMEVCDLVLSDDEKLETNKPLCFIEERLRKPFTKQSVKEDIK 67
+F L+ C+ +EV P F+EER K F K+S ++ K
Sbjct: 108 KFSLNKCVLRLEVL------------KNPHNFVEERAFKWFVKKSYEKTFK 146
>ref|NP_223231.1| DIAMINOPIMELATE EPIMERASE [Helicobacter pylori J99]
Length = 273
Score = 21.6 bits (44), Expect = 5.4
Identities = 10/19 (52%), Positives = 12/19 (62%)
Query: 52 RLRKPFTKQSVKEDIKNFY 70
R +K FT SV E+I FY
Sbjct: 126 RCKKFFTNNSVLENIPMFY 144
>ref|NP_223275.1| putative [Helicobacter pylori J99]
Length = 110
Score = 21.2 bits (43), Expect = 7.0
Identities = 7/13 (53%), Positives = 12/13 (91%)
Query: 8 KSLLIQRSLEFYL 20
+SLL +++LEFY+
Sbjct: 94 RSLLFEKALEFYM 106
>ref|NP_223243.1| putative [Helicobacter pylori J99]
Length = 678
Score = 21.2 bits (43), Expect = 7.0
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 46 LCFIEERLRKPFTKQSVKEDIKNFYRALKT 75
L ++ E ++P KQ+ K + FY+ L++
Sbjct: 632 LRYLNESPKEPEDKQNDKIEASKFYQQLES 661
>ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicobacter pylori J99]
Length = 745
Score = 21.2 bits (43), Expect = 7.0
Identities = 9/24 (37%), Positives = 14/24 (57%)
Query: 61 SVKEDIKNFYRALKTSEKPCEEIQ 84
S DIK+ Y A+K S+ + I+
Sbjct: 663 SFNNDIKSVYSAIKLSQATIKNIK 686
>ref|NP_223030.1| putative tetraacyldisaccharide-1-P 4'-kinase [Helicobacter pylori
J99]
Length = 312
Score = 21.2 bits (43), Expect = 7.0
Identities = 16/52 (30%), Positives = 24/52 (45%), Gaps = 8/52 (15%)
Query: 9 SLLIQRSLEFYLSDCLSPM-------EVCDLVLSDDEKLETNKPLCFIEERL 53
SLL+ L DC P+ E+C VL + ++ + P C I+E L
Sbjct: 262 SLLVTSKDLVKLQDCKLPLSVLDLKLEICPKVLEEIDRYILSYP-CNIKEHL 312
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 21.2 bits (43), Expect = 7.0
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 77 EKPCEEIQFSKEQKIKQLLEEYTHK 101
++P + ++ ++ L+EY HK
Sbjct: 650 DEPATHLSVPARKEFRKFLKEYAHK 674
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 21.2 bits (43), Expect = 7.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 60 QSVKEDIKNFYRA 72
QS D+KNFY+A
Sbjct: 311 QSYVSDLKNFYQA 323
>ref|NP_224155.1| putative [Helicobacter pylori J99]
Length = 256
Score = 20.8 bits (42), Expect = 9.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 67 KNFYRALKTSEKPCE 81
KNF RA K EK C+
Sbjct: 44 KNFTRAKKYFEKACK 58
>ref|NP_223712.1| putative [Helicobacter pylori J99]
Length = 78
Score = 20.8 bits (42), Expect = 9.2
Identities = 7/19 (36%), Positives = 13/19 (67%)
Query: 86 SKEQKIKQLLEEYTHKLCQ 104
++E +LL++Y H+ CQ
Sbjct: 39 NQELNALELLKDYLHESCQ 57
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.136 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,623
Number of Sequences: 1491
Number of extensions: 4687
Number of successful extensions: 30
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 26
length of query: 108
length of database: 494,079
effective HSP length: 66
effective length of query: 42
effective length of database: 395,673
effective search space: 16618266
effective search space used: 16618266
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 42 (20.8 bits)