BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645436|ref|NP_207610.1| hypothetical protein
[Helicobacter pylori 26695]
(148 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223471.1| putative [Helicobacter pylori J99] 280 1e-77
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 24 1.5
ref|NP_223253.1| putative [Helicobacter pylori J99] 24 2.0
ref|NP_222895.1| putative [Helicobacter pylori J99] 23 2.6
ref|NP_223988.1| putative [Helicobacter pylori J99] 23 3.4
ref|NP_222911.1| putative [Helicobacter pylori J99] 23 3.4
ref|NP_223973.1| putative [Helicobacter pylori J99] 23 4.4
ref|NP_224168.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 22 5.8
ref|NP_223788.1| putative [Helicobacter pylori J99] 22 5.8
ref|NP_223773.1| putative [Helicobacter pylori J99] 22 5.8
ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 22 5.8
ref|NP_224000.1| putative histidine kinase sensor protein [... 22 7.5
ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERA... 22 7.5
ref|NP_223644.1| putative [Helicobacter pylori J99] 22 9.9
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 22 9.9
>ref|NP_223471.1| putative [Helicobacter pylori J99]
Length = 148
Score = 280 bits (716), Expect = 1e-77
Identities = 143/148 (96%), Positives = 145/148 (97%)
Query: 1 MNRMNKNYLLIFLLLASLVAREKDASSNLFDLIDKGINREQELKEQEQKTRLKLAQSPLV 60
MNRM +LLIFLLLASL+AREKDASSNLFDLIDKGINREQELKEQEQKTRLKLAQSPLV
Sbjct: 1 MNRMKPIFLLIFLLLASLIAREKDASSNLFDLIDKGINREQELKEQEQKTRLKLAQSPLV 60
Query: 61 ALEIVPQETPYLEWQGARESYYLKVSAVVESVVILKIDINQGRSCSLYPTPKSVSLVRNQ 120
ALEIVPQETPYLEWQGARESYYLKVSAVVESVVILKIDINQGRSCSLYPTPKSVSLVRNQ
Sbjct: 61 ALEIVPQETPYLEWQGARESYYLKVSAVVESVVILKIDINQGRSCSLYPTPKSVSLVRNQ 120
Query: 121 SVAYEILCENQPLWIEVSTNLGKRTFQF 148
SVAYEILCENQPLWIEVSTNLGKRTFQF
Sbjct: 121 SVAYEILCENQPLWIEVSTNLGKRTFQF 148
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 24.3 bits (51), Expect = 1.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 18 LVAREKDASSNLFDLIDKGINREQELKEQ-EQKTR 51
LV KDA +LF I + + E+EL + EQ +R
Sbjct: 355 LVKESKDAIGDLFSQITESAHTEEELSSKVEQLSR 389
>ref|NP_223253.1| putative [Helicobacter pylori J99]
Length = 329
Score = 23.9 bits (50), Expect = 2.0
Identities = 14/49 (28%), Positives = 27/49 (54%)
Query: 43 LKEQEQKTRLKLAQSPLVALEIVPQETPYLEWQGARESYYLKVSAVVES 91
L++ + RL A++ ++ ++P ET Y Q E+Y L+ S + E+
Sbjct: 91 LRKGDFLVRLIKAKTAQKSVTLIPGETRYFFTQILSETYQLETSDLNEA 139
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 23.5 bits (49), Expect = 2.6
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 22 EKDASS----NLFDLIDKGINREQELKEQEQKTRLK-LAQSPLVALE 63
EKDA + NLF+++ +++ +L E+E RL+ L + L+ LE
Sbjct: 136 EKDADTEGKQNLFEVLKAILDKISKLSEEEVNERLEVLLKMVLMRLE 182
>ref|NP_223988.1| putative [Helicobacter pylori J99]
Length = 290
Score = 23.1 bits (48), Expect = 3.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 15 LASLVAREKDASSNLFDLIDKGINREQE-LKEQEQK 49
L +L+ R + F ID+G+N+ Q KE+ QK
Sbjct: 134 LEALIHRYGENIQGYFYFIDEGLNKNQNYYKEELQK 169
>ref|NP_222911.1| putative [Helicobacter pylori J99]
Length = 127
Score = 23.1 bits (48), Expect = 3.4
Identities = 20/73 (27%), Positives = 33/73 (44%), Gaps = 14/73 (19%)
Query: 90 ESVVILKIDINQGRSCSLYP--TPK-----------SVSLVRNQSVAYEILCE-NQPLWI 135
E VVI + +N+G SC PK L +Q + Y + C+ NQ L +
Sbjct: 53 EPVVIKNLIVNRGNSCEATKKVEPKFGDKFKKEKLFDHELKYSQQIFYRLDCKPNQLLEV 112
Query: 136 EVSTNLGKRTFQF 148
++ T+ G+ +F
Sbjct: 113 KIITDKGEYYHKF 125
>ref|NP_223973.1| putative [Helicobacter pylori J99]
Length = 253
Score = 22.7 bits (47), Expect = 4.4
Identities = 16/48 (33%), Positives = 24/48 (49%)
Query: 6 KNYLLIFLLLASLVAREKDASSNLFDLIDKGINREQELKEQEQKTRLK 53
KNYLL ++ A A EKD S + + I + + +K Q T L+
Sbjct: 54 KNYLLNWVYHALECAHEKDISMHSLEEILQKSHLPIRIKIMAQNTLLE 101
>ref|NP_224168.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 323
Score = 22.3 bits (46), Expect = 5.8
Identities = 25/90 (27%), Positives = 40/90 (43%), Gaps = 11/90 (12%)
Query: 14 LLASLVAREKDASSNLFDLIDKGINREQELKEQEQKTRLKLAQSPLVALEIVPQETPYLE 73
++A+++ D FD + + ELKE K L L L + I+ + E
Sbjct: 106 IVANILKPSGDFEIRKFDTVGPRVG--SELKE---KGILSLI---LALIAIMVYVSFRYE 157
Query: 74 WQGARESYYLKVSAVV---ESVVILKIDIN 100
W+ A S V V+ SV++ KID+N
Sbjct: 158 WRFALASVVALVHDVILVASSVIVFKIDMN 187
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 22.3 bits (46), Expect = 5.8
Identities = 8/27 (29%), Positives = 20/27 (73%)
Query: 33 IDKGINREQELKEQEQKTRLKLAQSPL 59
I+K ++ + ELK ++Q+ +L++ ++ L
Sbjct: 171 IEKALHEKNELKFKQQEEQLEMLRNEL 197
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 22.3 bits (46), Expect = 5.8
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 23 KDASSNLFDL---IDKGINREQELKEQEQKTRLKLAQ 56
+D S+L D DK ++++ EQE++ RL+ Q
Sbjct: 91 EDIFSSLNDFQEKTDKNAQKDEQKNEQEEQRRLREQQ 127
>ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 543
Score = 22.3 bits (46), Expect = 5.8
Identities = 27/125 (21%), Positives = 55/125 (43%), Gaps = 11/125 (8%)
Query: 17 SLVAREKDASSNLFDLIDKGINREQELKEQEQKTRLKLAQSPLVALEIVPQETPYLEWQG 76
S++ +K S+ LID E+ + + +KTRL+ + L+ LE + P
Sbjct: 416 SIIFFQKTPSAKEVILIDASKLGEEYTENKNKKTRLRPSDMDLI-LETFQNKAP------ 468
Query: 77 ARESYYLKVSAVVESVVILKIDINQGRSCSLYPTPKSVSLVRNQSVAYEILCENQPLWIE 136
+ + VS + + +N G+ ++ T +++S +++ + E L+ E
Sbjct: 469 -KSDFCALVS--FDEITEKNYSLNPGQYFTIEDTSETISQAEFENLMQQYSSELASLFDE 525
Query: 137 VSTNL 141
S NL
Sbjct: 526 -SQNL 529
>ref|NP_224000.1| putative histidine kinase sensor protein [Helicobacter pylori
J99]
Length = 344
Score = 21.9 bits (45), Expect = 7.5
Identities = 10/17 (58%), Positives = 13/17 (75%)
Query: 15 LASLVAREKDASSNLFD 31
L +L++R KDAS LFD
Sbjct: 24 LNALISRYKDASIALFD 40
>ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE [Helicobacter pylori
J99]
Length = 581
Score = 21.9 bits (45), Expect = 7.5
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 53 KLAQSPLVALEIVPQETPYLEWQGARESYYLKVSAVVESVVILKIDINQG 102
K+ P AL QETP +E + YY K ++ ++ +G
Sbjct: 333 KITTMPTAAL----QETPVIELINKVQKYYAKADVSAAALFNFGANLKKG 378
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 21.6 bits (44), Expect = 9.9
Identities = 11/40 (27%), Positives = 22/40 (54%), Gaps = 4/40 (10%)
Query: 21 REKDASSNLFDLIDKG-INREQELKEQEQKTRLKLAQSPL 59
+ K+ NLF ++DKG + ++E ++ ++ Q PL
Sbjct: 38 KPKNPQPNLFSILDKGDVATNNPVEESDKANKI---QEPL 74
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 21.6 bits (44), Expect = 9.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 35 KGINREQELKEQEQKTR 51
K + +E+E KEQ QK +
Sbjct: 146 KALEKEKEAKEQAQKAQ 162
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.133 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,165
Number of Sequences: 1491
Number of extensions: 5691
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 16
length of query: 148
length of database: 494,079
effective HSP length: 70
effective length of query: 78
effective length of database: 389,709
effective search space: 30397302
effective search space used: 30397302
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 44 (21.6 bits)