BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644713|ref|NP_206883.1| ribosomal protein S9 (rps9)
[Helicobacter pylori 26695]
(129 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222798.1| 30S RIBOSOMAL PROTEIN S9 [Helicobacter pyl... 255 3e-70
ref|NP_224110.1| putative [Helicobacter pylori J99] 24 1.2
ref|NP_223645.1| putative [Helicobacter pylori J99] 23 2.0
ref|NP_223558.1| ACETATE KINASE [Helicobacter pylori J99] 23 2.7
ref|NP_223837.1| 30S RIBOSOMAL PROTEIN S12 [Helicobacter py... 22 5.9
ref|NP_223528.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 22 5.9
ref|NP_224051.1| putative [Helicobacter pylori J99] 22 7.8
ref|NP_223805.1| Flavodoxin [Helicobacter pylori J99] 22 7.8
ref|NP_223530.1| putative [Helicobacter pylori J99] 22 7.8
>ref|NP_222798.1| 30S RIBOSOMAL PROTEIN S9 [Helicobacter pylori J99]
Length = 129
Score = 255 bits (651), Expect = 3e-70
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MRKIYATGKRKTAIAKVWLTPGKGELSINEQSLNQWLGGHEAIKMKVMQPLLLTKQEQSV 60
MRKIYATGKRKTAIAKVWLTPGKGELSINEQSLNQWLGGHEAIKMKVMQPLLLTKQEQSV
Sbjct: 1 MRKIYATGKRKTAIAKVWLTPGKGELSINEQSLNQWLGGHEAIKMKVMQPLLLTKQEQSV 60
Query: 61 DIKAVVFGGGYSAQAEALRHGISKALNAYDIAFRAILKPKGLLTRDSRVVERKKYGKRKA 120
DIKAVVFGGGYSAQAEALRHGISKALNAYDIAFRAILKPKGLLTRDSRVVERKKYGKRKA
Sbjct: 61 DIKAVVFGGGYSAQAEALRHGISKALNAYDIAFRAILKPKGLLTRDSRVVERKKYGKRKA 120
Query: 121 RRSPQFSKR 129
RRSPQFSKR
Sbjct: 121 RRSPQFSKR 129
>ref|NP_224110.1| putative [Helicobacter pylori J99]
Length = 306
Score = 24.3 bits (51), Expect = 1.2
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 86 LNAYDIAFRAILKPKGLLTRDSRVVERKKYGKRKARRSP 124
L +YD F AI+K + +++D + E+ K +++ + P
Sbjct: 172 LESYDEVFSAIIKNEQKVSKDKSIQEKIKKIEKQEKLLP 210
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 23.5 bits (49), Expect = 2.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 22 GKGELSINEQSLNQWLGGH 40
GK +++NEQ+LN++ H
Sbjct: 802 GKNSINLNEQTLNEYFIHH 820
>ref|NP_223558.1| ACETATE KINASE [Helicobacter pylori J99]
Length = 403
Score = 23.1 bits (48), Expect = 2.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 62 IKAVVFGGGYSAQAEALRHGISKALNAYDIA 92
+ A++F GG ALR + + L IA
Sbjct: 323 VDAIIFTGGLGENYSALRESVCEGLENLGIA 353
>ref|NP_223837.1| 30S RIBOSOMAL PROTEIN S12 [Helicobacter pylori J99]
Length = 135
Score = 21.9 bits (45), Expect = 5.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 106 DSRVVERKKYGKRKAR 121
+ R V R KYG +KA+
Sbjct: 108 NKRTVSRSKYGTKKAK 123
>ref|NP_223528.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 791
Score = 21.9 bits (45), Expect = 5.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 49 QPLLLTKQEQSVDIKAVVFGGGYSAQAEALRHGISK 84
Q L++T Q++ I GG + + +L GIS+
Sbjct: 594 QRLIVTNLSQAIRIYGYEVGGTFRYKGVSLNVGISR 629
>ref|NP_224051.1| putative [Helicobacter pylori J99]
Length = 259
Score = 21.6 bits (44), Expect = 7.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 77 ALRHGISKALNAYDIAFRAILKPKGLLTRDS 107
AL G S ++ DI+ +LK K L+ D+
Sbjct: 169 ALNEGNSFSIQTTDISVAELLKSKKFLSLDA 199
>ref|NP_223805.1| Flavodoxin [Helicobacter pylori J99]
Length = 164
Score = 21.6 bits (44), Expect = 7.8
Identities = 11/29 (37%), Positives = 16/29 (54%)
Query: 63 KAVVFGGGYSAQAEALRHGISKALNAYDI 91
K +F G S AEA+ ISKA+ ++
Sbjct: 3 KIGIFFGTDSGNAEAIAEKISKAIGNAEV 31
>ref|NP_223530.1| putative [Helicobacter pylori J99]
Length = 243
Score = 21.6 bits (44), Expect = 7.8
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 65 VVFGGGYSAQAEALRHGISKALNAYDIAFRAILKPKGLLTRDSRVVERKKYGKRKARR 122
V F G Y A E + + L+ IAF+ I + ++D+ ++ K + + R
Sbjct: 135 VEFDGSYRALLEQKQVDMLMGLDIQRIAFKKIADRILIFSKDTDLIPALKLARDEGLR 192
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.133 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,310
Number of Sequences: 1491
Number of extensions: 3864
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 9
length of query: 129
length of database: 494,079
effective HSP length: 68
effective length of query: 61
effective length of database: 392,691
effective search space: 23954151
effective search space used: 23954151
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 44 (21.6 bits)