BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645439|ref|NP_207613.1| hypothetical protein
[Helicobacter pylori 26695]
(153 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223477.1| putative [Helicobacter pylori J99] 288 4e-80
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 27 0.25
ref|NP_222957.1| ABC transporter, permease [Helicobacter py... 27 0.25
ref|NP_222831.1| putative [Helicobacter pylori J99] 26 0.56
ref|NP_223830.1| putative [Helicobacter pylori J99] 25 0.73
ref|NP_223384.1| putative [Helicobacter pylori J99] 25 0.73
ref|NP_223645.1| putative [Helicobacter pylori J99] 24 1.6
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 24 1.6
ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99] 24 2.1
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 23 2.8
ref|NP_224104.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERA... 23 4.7
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 22 6.1
ref|NP_222772.1| putative [Helicobacter pylori J99] 22 6.1
ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ... 22 8.0
ref|NP_222824.1| putative [Helicobacter pylori J99] 22 8.0
>ref|NP_223477.1| putative [Helicobacter pylori J99]
Length = 153
Score = 288 bits (738), Expect = 4e-80
Identities = 142/153 (92%), Positives = 149/153 (96%)
Query: 1 MEQNIFSLLIQKKSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKDIWASK 60
MEQNIFSLLIQKKSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKD+WASK
Sbjct: 1 MEQNIFSLLIQKKSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKDLWASK 60
Query: 61 EFNQRFAKEISHFLNTQGHAYGFDGLNGLEILGYVPKDALKKSNFYAPIKKQARFFRPSA 120
EFNQRFAKEISHFLNTQGHA G D L+ LEILGYVPKD+L+K+NFYAPIKKQA+F+RPSA
Sbjct: 61 EFNQRFAKEISHFLNTQGHACGLDELDALEILGYVPKDSLEKANFYAPIKKQAQFYRPSA 120
Query: 121 LGLFHNPIKDARLHECFEKARALIHYQRSFFEE 153
LGLFHNPIKDARLHECFEKARALIHYQRSFFEE
Sbjct: 121 LGLFHNPIKDARLHECFEKARALIHYQRSFFEE 153
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 26.9 bits (58), Expect = 0.25
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 68 KEISHFLNTQGHAYGFD----GLNGLEILGYVPKDALKK 102
+EI+HFLNTQ + G D L LE+ + K+ LKK
Sbjct: 329 EEINHFLNTQQSSLGKDLQQSLLGFLEVALKLKKERLKK 367
>ref|NP_222957.1| ABC transporter, permease [Helicobacter pylori J99]
Length = 338
Score = 26.9 bits (58), Expect = 0.25
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 2 EQNIFSLLIQKKSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKDIWASKE 61
+ I S K++ L + L L + PL + + LFI+ KD+K F +A E
Sbjct: 6 KMRILSFKKNKRAVFSLYLFIALLALSLLAPLWVNDRPLFIY-KDNKAYFPMFKNYAEVE 64
Query: 62 FNQRF 66
F F
Sbjct: 65 FGGDF 69
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 25.8 bits (55), Expect = 0.56
Identities = 13/55 (23%), Positives = 26/55 (46%)
Query: 85 GLNGLEILGYVPKDALKKSNFYAPIKKQARFFRPSALGLFHNPIKDARLHECFEK 139
G E++ Y+ K+ I KQ F++PS++ +D ++ E ++K
Sbjct: 294 GSKAQELIAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFKVTEEWQK 348
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 25.4 bits (54), Expect = 0.73
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 85 GLNGLEILGYVPKDALKKSNFYAPIKKQARFFRPSALGLFHNPIKDARLHECFEK 139
G E++ Y+ K+ I KQ F+RPS++ +D E ++K
Sbjct: 261 GSKAQELIAYLQKELESLPYSQKAIAKQVDFYRPSSIAYLELDPRDFNATEEWQK 315
>ref|NP_223384.1| putative [Helicobacter pylori J99]
Length = 355
Score = 25.4 bits (54), Expect = 0.73
Identities = 17/52 (32%), Positives = 25/52 (47%)
Query: 13 KSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKDIWASKEFNQ 64
K KL K L+ + ++N L +F+ D LFA K I SKE ++
Sbjct: 34 KIRSKLNDQEKHDSLEEIYKATNEKNFLQLFLTDYANLFAAKVIKVSKEIDE 85
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 24.3 bits (51), Expect = 1.6
Identities = 14/48 (29%), Positives = 25/48 (51%)
Query: 97 KDALKKSNFYAPIKKQARFFRPSALGLFHNPIKDARLHECFEKARALI 144
K + K ++YA +K+Q + S G + K A+ E F++ AL+
Sbjct: 462 KQEILKGDYYATLKEQEILAQFSGWGGLESYFKKAQHPEEFKELNALL 509
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 24.3 bits (51), Expect = 1.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 63 NQRFAKEISHFLNTQGHAYG 82
NQ A ++S L+ GHAYG
Sbjct: 269 NQESATKVSDLLDKIGHAYG 288
>ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99]
Length = 451
Score = 23.9 bits (50), Expect = 2.1
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 87 NGLEILGYVPKDALKKSNFYAPIKKQARFFRPSALGLFHNPIKDARLHEC 136
N L+ LG KD + NF KK F + +GL + D ++ EC
Sbjct: 77 NALKELGVETKDLIGSPNFTKFEKKDTHFEIEADIGLKPTIVLD-KIQEC 125
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 23.5 bits (49), Expect = 2.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 61 EFNQRFAKEISHFLNTQGH 79
E+N F+K + +N QGH
Sbjct: 990 EYNDAFSKNLWQLINYQGH 1008
>ref|NP_224104.1| putative [Helicobacter pylori J99]
Length = 203
Score = 23.1 bits (48), Expect = 3.6
Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 3/44 (6%)
Query: 30 FMPLSLQENLLFIFIKDSKLLFAFKDIWASKEFNQRFAKEISHF 73
F LSL+ F L+F+ + I+ +KE F KE++H+
Sbjct: 126 FKRLSLERGFKEAF---GDLMFSSRVIFDNKEDFYEFLKELNHY 166
>ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE [Helicobacter pylori
J99]
Length = 581
Score = 22.7 bits (47), Expect = 4.7
Identities = 12/43 (27%), Positives = 20/43 (45%)
Query: 57 WASKEFNQRFAKEISHFLNTQGHAYGFDGLNGLEILGYVPKDA 99
W+ K +NQ +++ N Y FD +G++ V K A
Sbjct: 411 WSYKFYNQLQPGDLTISFNENVRGYNFDMFSGVKYQVDVTKPA 453
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 22.3 bits (46), Expect = 6.1
Identities = 16/58 (27%), Positives = 29/58 (49%), Gaps = 8/58 (13%)
Query: 4 NIFSLLIQKKSYKKLETLLKLKKLKVF-----MPLSLQENLLFIFIKDSKLLFAFKDI 56
N+ S ++ ++KK+ET+ K ++F SL E FI +K+ +FK +
Sbjct: 703 NVSSKIVSVTTHKKVETMGNNAKTEIFERKSACVWSLHE---FISALSNKVKLSFKSV 757
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 22.3 bits (46), Expect = 6.1
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 96 PKDALKKSNFY 106
PKDALK +NF+
Sbjct: 13 PKDALKSTNFH 23
>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
J99]
Length = 619
Score = 21.9 bits (45), Expect = 8.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 103 SNFYAPIKKQARFFRPSALGLFHNPI 128
SNF API+K A +R L NP+
Sbjct: 566 SNFKAPIEKIASSYRYLILLRSKNPL 591
>ref|NP_222824.1| putative [Helicobacter pylori J99]
Length = 266
Score = 21.9 bits (45), Expect = 8.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 24 LKKLKVFMPLSLQENLLFIFIK 45
LK++KV L+ +E+LL F+K
Sbjct: 2 LKRIKVGSDLNKKESLLDAFVK 23
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.326 0.142 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,878
Number of Sequences: 1491
Number of extensions: 8661
Number of successful extensions: 35
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 17
length of query: 153
length of database: 494,079
effective HSP length: 70
effective length of query: 83
effective length of database: 389,709
effective search space: 32345847
effective search space used: 32345847
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)