BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645442|ref|NP_207616.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(114 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223480.1| putative [Helicobacter pylori J99] 230 7e-63
ref|NP_223466.1| putative [Helicobacter pylori J99] 25 0.56
ref|NP_223593.1| putative AMINO ACID ABC TRANSPORTER, BINDI... 22 3.6
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 22 4.7
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 22 4.7
ref|NP_222991.1| putative [Helicobacter pylori J99] 22 4.7
>ref|NP_223480.1| putative [Helicobacter pylori J99]
Length = 114
Score = 230 bits (587), Expect = 7e-63
Identities = 112/114 (98%), Positives = 114/114 (99%)
Query: 1 MRFLNNKHREKGLKAEEEACGFLKSLGFEMVERNFFSQFGEIDIIALKKGVLHFIEVKSG 60
MRFLNNKHREKGLKAEEEACGFLK+LGFEM+ERNFFSQFGEIDIIALKKGVLHFIEVKSG
Sbjct: 1 MRFLNNKHREKGLKAEEEACGFLKTLGFEMIERNFFSQFGEIDIIALKKGVLHFIEVKSG 60
Query: 61 ENFDPIYAITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLENITF 114
ENFDPIYAITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLENITF
Sbjct: 61 ENFDPIYAITPSKLKKMIKTIRCYLSQKDPNSDFCIDALIVKNGKFELLENITF 114
>ref|NP_223466.1| putative [Helicobacter pylori J99]
Length = 336
Score = 25.0 bits (53), Expect = 0.56
Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 2/46 (4%)
Query: 14 KAEEEACGFLKSLGFEMVERNFFSQFGEIDIIALKKGVLHFIEVKS 59
K E +C LK L + ++R F Q ++D+I+ L F E KS
Sbjct: 91 KCEFVSCEPLKEL--QNIQRTIFKQATQLDLISCALEELDFKEKKS 134
>ref|NP_223593.1| putative AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR
[Helicobacter pylori J99]
Length = 257
Score = 22.3 bits (46), Expect = 3.6
Identities = 13/31 (41%), Positives = 17/31 (53%), Gaps = 6/31 (19%)
Query: 3 FLNNKHREKGLKAEEEAC------GFLKSLG 27
F+ NKH+EK L+ +A G LK LG
Sbjct: 216 FVINKHQEKALELINQAMRRLINKGVLKRLG 246
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 21.9 bits (45), Expect = 4.7
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 5 NNKHREKGLKAEEEACGFLKSLGFEMVERNFFSQ 38
NN ++ G+ + + G L LG ++ + FF +
Sbjct: 459 NNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGE 492
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 21.9 bits (45), Expect = 4.7
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 5 NNKHREKGLKAEEEACGFLKSLGFEMVERNFFSQ 38
NN ++ G+ + + G L LG ++ + FF +
Sbjct: 446 NNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGE 479
>ref|NP_222991.1| putative [Helicobacter pylori J99]
Length = 418
Score = 21.9 bits (45), Expect = 4.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 54 FIEVKSGENFDPIYAITPS 72
FI+++ G +FD Y I PS
Sbjct: 137 FIKIQEGCDFDCNYCIIPS 155
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.323 0.142 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,241
Number of Sequences: 1491
Number of extensions: 5719
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 6
length of query: 114
length of database: 494,079
effective HSP length: 66
effective length of query: 48
effective length of database: 395,673
effective search space: 18992304
effective search space used: 18992304
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 43 (21.2 bits)