BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645443|ref|NP_207617.1| thioredoxin (trxA)
[Helicobacter pylori 26695]
(106 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223481.1| THIOREDOXIN [Helicobacter pylori J99] 216 9e-59
ref|NP_224069.1| putative THIOREDOXIN [Helicobacter pylori ... 67 1e-13
ref|NP_223011.1| GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE [... 29 0.025
ref|NP_223025.1| putative [Helicobacter pylori J99] 25 0.48
ref|NP_223662.1| putative [Helicobacter pylori J99] 24 0.81
ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99] 24 1.1
ref|NP_224155.1| putative [Helicobacter pylori J99] 23 1.8
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 23 1.8
ref|NP_224189.1| putative peroxidase [Helicobacter pylori J99] 23 2.4
ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 22 4.0
ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 22 5.3
ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobact... 21 9.0
>ref|NP_223481.1| THIOREDOXIN [Helicobacter pylori J99]
Length = 106
Score = 216 bits (551), Expect = 9e-59
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MSHYIELTEENFESTIKKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDE 60
MSHYIELTEENFESTIKKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDE
Sbjct: 1 MSHYIELTEENFESTIKKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDE 60
Query: 61 QEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVALKEQLNKLLG 106
QEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVALKEQLNKLLG
Sbjct: 61 QEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVALKEQLNKLLG 106
>ref|NP_224069.1| putative THIOREDOXIN [Helicobacter pylori J99]
Length = 104
Score = 67.0 bits (162), Expect = 1e-13
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 10 ENFESTIKKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFG 69
+N+ +V+ A WC C+ + P+++ LA Y+GK + KV+ DE ++L G
Sbjct: 8 KNYAEKTAHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLG 67
Query: 70 IRSIPTLLFTKDG-EVVHQLVGVQTKVALKEQLNKLL 105
IR IPTL+F K+ EV +LV ++ +++ L LL
Sbjct: 68 IRKIPTLIFYKNAKEVGERLVEPSSQKPIEDALKALL 104
>ref|NP_223011.1| GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE [Helicobacter pylori J99]
Length = 430
Score = 29.3 bits (64), Expect = 0.025
Identities = 19/64 (29%), Positives = 32/64 (49%), Gaps = 7/64 (10%)
Query: 3 HYIELTEENFESTIKKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQE 62
H E EEN + +KKG + + P ++ + + E+ S YEG K+ VN+ +
Sbjct: 68 HADEEIEENIINVLKKGTS-------FGAPTELETTLAKEIISCYEGLDKVRLVNSGTEA 120
Query: 63 ELSA 66
+SA
Sbjct: 121 TMSA 124
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 25.0 bits (53), Expect = 0.48
Identities = 18/67 (26%), Positives = 35/67 (51%), Gaps = 3/67 (4%)
Query: 37 SPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVA 96
+P+I++L K ++ N + +ELSA+ ++ P L D E + +L V +
Sbjct: 9 NPMIEKLLESVSKKLELSIENFNHYQELSAR--LKGDPEWLLIADDECLEKLDQVDW-LE 65
Query: 97 LKEQLNK 103
LKE +++
Sbjct: 66 LKETISQ 72
>ref|NP_223662.1| putative [Helicobacter pylori J99]
Length = 668
Score = 24.3 bits (51), Expect = 0.81
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 4 YIELTEENFESTIKKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEE 63
++E+T NFE+ IK G A+V + K+LS D S Y +I + N E+E+
Sbjct: 548 WVEVTPCNFEAGIKSG-AVVSPYVMGVPSSKVLS---DITTSHY---FRIERKNYGEREQ 600
Query: 64 LSAKFGI 70
+G+
Sbjct: 601 CQKLYGV 607
>ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99]
Length = 206
Score = 23.9 bits (50), Expect = 1.1
Identities = 29/106 (27%), Positives = 49/106 (45%), Gaps = 15/106 (14%)
Query: 3 HYIELTEENFESTIKKGVALVDFWA----PWCGPCKMLSPVIDELASEYEGKAKICKVNT 58
HY ++EE F+ I+KG L WA + G K+ PV L EGK I ++
Sbjct: 52 HYNFVSEEEFKQGIEKGQFLE--WAIVHNHYYGTSKI--PVEKALK---EGKIVIFDIDV 104
Query: 59 DEQEELSAKFGIRSIPTLLFTKDGEVVHQ---LVGVQTKVALKEQL 101
E L + + + TK+ E++ + L G +K ++++L
Sbjct: 105 QGHEILKKHYP-NACSVFISTKNQEILKERLLLRGTDSKETIEKRL 149
>ref|NP_224155.1| putative [Helicobacter pylori J99]
Length = 256
Score = 23.1 bits (48), Expect = 1.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 42 ELASEYEGKAKICKVNTDEQEELSAKF 68
E A E+ AK+CK+N E+ + A+F
Sbjct: 88 EKALEHTATAKVCKLNDAEKCKDLAEF 114
Score = 21.6 bits (44), Expect = 5.3
Identities = 11/29 (37%), Positives = 17/29 (57%)
Query: 40 IDELASEYEGKAKICKVNTDEQEELSAKF 68
+++L + E +K CK+N E LSA F
Sbjct: 118 VNDLKNALEYYSKSCKLNNVEGCMLSATF 146
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 23.1 bits (48), Expect = 1.8
Identities = 8/22 (36%), Positives = 15/22 (67%)
Query: 59 DEQEELSAKFGIRSIPTLLFTK 80
++ +++ FG+ I TL+FTK
Sbjct: 376 EDMKDIYDSFGVLGIDTLIFTK 397
>ref|NP_224189.1| putative peroxidase [Helicobacter pylori J99]
Length = 198
Score = 22.7 bits (47), Expect = 2.4
Identities = 11/43 (25%), Positives = 20/43 (45%)
Query: 39 VIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKD 81
++ +LA +++ A + DE ELS G + + KD
Sbjct: 2 LVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKD 44
>ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 757
Score = 21.9 bits (45), Expect = 4.0
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 94 KVALKEQLNKLL 105
++ALK QLNKLL
Sbjct: 563 EIALKHQLNKLL 574
>ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 733
Score = 21.6 bits (44), Expect = 5.3
Identities = 15/56 (26%), Positives = 22/56 (38%)
Query: 36 LSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGV 91
LS VI +G+ K +TD ++ L K L GE+ + GV
Sbjct: 616 LSRVITNAFKSEDGRLKFLTFSTDSEQFLLNKLRENGTSKSLLLNVGELQKLIEGV 671
>ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobacter pylori J99]
Length = 712
Score = 20.8 bits (42), Expect = 9.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 45 SEYEGKAKICKVNTDEQEELSAK 67
S E K + CK+ D +EL+ K
Sbjct: 521 SSDESKIEACKIIQDAWDELTLK 543
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.135 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,979
Number of Sequences: 1491
Number of extensions: 3768
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 13
length of query: 106
length of database: 494,079
effective HSP length: 65
effective length of query: 41
effective length of database: 397,164
effective search space: 16283724
effective search space used: 16283724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 42 (20.8 bits)