BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645446|ref|NP_207620.1| ss-DNA binding protein
12RNP2 precursor [Helicobacter pylori 26695]
(82 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223484.1| putative [Helicobacter pylori J99] 159 1e-41
ref|NP_223729.1| putative TYPE II DNA MODIFICATION ENZYME (... 24 0.49
ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pyl... 23 1.1
ref|NP_223011.1| GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE [... 23 1.1
ref|NP_224019.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223055.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 22 3.2
ref|NP_223342.1| UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE ... 22 3.2
ref|NP_224042.1| putative [Helicobacter pylori J99] 21 5.4
ref|NP_223761.1| putative [Helicobacter pylori J99] 21 5.4
ref|NP_222911.1| putative [Helicobacter pylori J99] 21 5.4
ref|NP_223980.1| putative [Helicobacter pylori J99] 20 7.1
ref|NP_223158.1| putative [Helicobacter pylori J99] 20 7.1
ref|NP_222912.1| putative [Helicobacter pylori J99] 20 7.1
ref|NP_222827.1| putative [Helicobacter pylori J99] 20 7.1
ref|NP_224012.1| PREPHENATE DEHYDROGENASE [Helicobacter pyl... 20 9.2
ref|NP_223372.1| putative [Helicobacter pylori J99] 20 9.2
>ref|NP_223484.1| putative [Helicobacter pylori J99]
Length = 82
Score = 159 bits (401), Expect = 1e-41
Identities = 79/82 (96%), Positives = 80/82 (97%)
Query: 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIA 60
M+NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEE V EAIA
Sbjct: 1 MKNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEEGVREAIA 60
Query: 61 KLDNTDFMGRTIRVTEANPKKS 82
KLDNTDFMGRTIRVTEANPKKS
Sbjct: 61 KLDNTDFMGRTIRVTEANPKKS 82
>ref|NP_223729.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 320
Score = 24.3 bits (51), Expect = 0.49
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 19 KELFSQFGKVFNVKLIYDRETKK 41
KE FS++ KVF V L +RE K
Sbjct: 206 KEPFSEYIKVFTVSLAKNRECGK 228
>ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pylori J99]
Length = 421
Score = 23.1 bits (48), Expect = 1.1
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 6 VGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGF-VEMQEESVSE 57
VG+ V E + + + G +K R+ KK KG+ F + ESV E
Sbjct: 15 VGSTVAKILQENQEIIKDRAGVEIKIKKAVVRDVKKHKGYAFEISDDLESVIE 67
>ref|NP_223011.1| GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE [Helicobacter pylori J99]
Length = 430
Score = 23.1 bits (48), Expect = 1.1
Identities = 14/46 (30%), Positives = 23/46 (49%)
Query: 20 ELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLDNT 65
E+F++F + K +Y + GF M EE + AI+K D +
Sbjct: 377 EMFAKFHQKMLFKGVYLACSSFETGFICEPMTEEMIDLAISKADES 422
>ref|NP_224019.1| putative [Helicobacter pylori J99]
Length = 314
Score = 22.7 bits (47), Expect = 1.4
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 19 KELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLDNTDFMGRTIRVTEAN 78
K Q K F + IYDR K+ + F+ Q + L N +F I+ +E N
Sbjct: 97 KHRLGQKSKAFIEESIYDRHDKEKERLKFLTAQNYNSIFENTVLKNLEFED-NIKKSEWN 155
Query: 79 PK 80
K
Sbjct: 156 KK 157
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 22.7 bits (47), Expect = 1.4
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 19 KELFSQFGKVFNV-KLIYDRETKKPKGFGFVE 49
K+++ + K V ++IYDR KK + GF +
Sbjct: 120 KDIYLDYEKHLEVLEMIYDRYVKKLEELGFYD 151
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 21.6 bits (44), Expect = 3.2
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 17/55 (30%)
Query: 16 EQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEM--------QEESVSEAIAKL 62
EQ K L+ + ++D E +PK GF QE+S+ +++L
Sbjct: 435 EQQKRLYDK---------LFDYEIVRPKNMGFFPFLEHALKISQEKSIEREVSRL 480
>ref|NP_223342.1| UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE [Helicobacter pylori J99]
Length = 433
Score = 21.6 bits (44), Expect = 3.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 42 PKGFGFVEMQEESVSEAIAKLDNTD 66
PKG+G V ++ V + + + D D
Sbjct: 134 PKGYGRVILENHQVKKIVEEKDAND 158
>ref|NP_224042.1| putative [Helicobacter pylori J99]
Length = 329
Score = 20.8 bits (42), Expect = 5.4
Identities = 8/22 (36%), Positives = 13/22 (58%)
Query: 48 VEMQEESVSEAIAKLDNTDFMG 69
+EM E+ + AI DN + +G
Sbjct: 229 IEMSEKRLGSAILVNDNNELVG 250
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 20.8 bits (42), Expect = 5.4
Identities = 8/23 (34%), Positives = 15/23 (64%)
Query: 11 YSATSEQVKELFSQFGKVFNVKL 33
Y +TSE +K+L +F K ++ +
Sbjct: 652 YQSTSESLKDLSEKFYKTSSLDM 674
>ref|NP_222911.1| putative [Helicobacter pylori J99]
Length = 127
Score = 20.8 bits (42), Expect = 5.4
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 4 IYVGNLVYSA--TSEQVKELFSQFGKVFNVKLIYDRETK 40
+ + NL+ + + E K++ +FG F + ++D E K
Sbjct: 55 VVIKNLIVNRGNSCEATKKVEPKFGDKFKKEKLFDHELK 93
>ref|NP_223980.1| putative [Helicobacter pylori J99]
Length = 242
Score = 20.4 bits (41), Expect = 7.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 34 IYDRETKKPKGFGF 47
IY +E ++ K FGF
Sbjct: 116 IYPKEKRQEKAFGF 129
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 20.4 bits (41), Expect = 7.1
Identities = 8/23 (34%), Positives = 15/23 (64%)
Query: 11 YSATSEQVKELFSQFGKVFNVKL 33
Y +TSE +K+L +F K ++ +
Sbjct: 572 YPSTSESLKDLSEKFYKTSSLDM 594
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 20.4 bits (41), Expect = 7.1
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 49 EMQEESVSEAIAKLDNTDFMGRTIRVTEANPK 80
E++ + + + + KL+ D + +T T+ PK
Sbjct: 163 EIKPQDMEDILKKLEELDKIFKTTDFTKFTPK 194
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 20.4 bits (41), Expect = 7.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 8 NLVYSATSEQVKEL 21
NL+Y SEQ K L
Sbjct: 474 NLIYPTQSEQAKNL 487
>ref|NP_224012.1| PREPHENATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 275
Score = 20.0 bits (40), Expect = 9.2
Identities = 8/31 (25%), Positives = 18/31 (57%)
Query: 48 VEMQEESVSEAIAKLDNTDFMGRTIRVTEAN 78
+E E+ +++A A ++N D+ + +AN
Sbjct: 239 IEKCEKEIAQAKAWIENNDYESLAEWMAQAN 269
>ref|NP_223372.1| putative [Helicobacter pylori J99]
Length = 133
Score = 20.0 bits (40), Expect = 9.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 43 KGFGFVEMQEESVSEAIAKLD 63
KG FVE +E + + + K D
Sbjct: 91 KGIHFVEWGDEKLEKILKKYD 111
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.132 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,823
Number of Sequences: 1491
Number of extensions: 3075
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 82
length of database: 494,079
effective HSP length: 58
effective length of query: 24
effective length of database: 407,601
effective search space: 9782424
effective search space used: 9782424
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 40 (20.0 bits)