BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645450|ref|NP_207624.1| conserved hypothetical ATP
binding protein [Helicobacter pylori 26695]
(196 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223488.1| putative [Helicobacter pylori J99] 357 e-100
ref|NP_223859.1| putative ABC transporter, ATP-binding prot... 30 0.043
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 27 0.28
ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pyl... 27 0.48
ref|NP_223192.1| cag island protein, DNA transfer protein [... 26 0.62
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 26 0.62
ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE... 26 0.81
ref|NP_222888.1| abc transporter, ATP-binding protein [Heli... 26 0.81
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 25 1.1
ref|NP_223372.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99] 25 1.1
ref|NP_223007.1| DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING PRO... 25 1.4
ref|NP_223778.1| ATP synthase F1, subunit gamma [Helicobact... 25 1.8
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 25 1.8
ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter ... 24 2.4
ref|NP_224044.1| putative [Helicobacter pylori J99] 24 2.4
ref|NP_224085.1| THYMIDYLATE KINASE [Helicobacter pylori J99] 23 4.0
ref|NP_223451.1| NEURAMINYLLACTOSE-BINDING HEMAGGLUTININ PR... 23 4.0
ref|NP_223145.1| Molybdate ABC transporter, ATP-binding pro... 23 4.0
ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylor... 23 4.0
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 23 5.3
ref|NP_223710.1| putative [Helicobacter pylori J99] 23 5.3
ref|NP_223437.1| putative Outer membrane protein [Helicobac... 23 5.3
ref|NP_224076.1| putative amino acid abc transporter, ATP-b... 23 6.9
ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEI... 23 6.9
ref|NP_223388.1| putative [Helicobacter pylori J99] 23 6.9
ref|NP_223258.1| putative [Helicobacter pylori J99] 23 6.9
ref|NP_223243.1| putative [Helicobacter pylori J99] 23 6.9
ref|NP_223217.1| putative [Helicobacter pylori J99] 23 6.9
ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylo... 23 6.9
ref|NP_223483.1| putative lipopolysaccharide biosynthesis p... 22 9.0
ref|NP_223303.1| putative 3-HYDROXYACID DEHYDROGENASE [Heli... 22 9.0
>ref|NP_223488.1| putative [Helicobacter pylori J99]
Length = 196
Score = 357 bits (916), Expect = e-100
Identities = 183/196 (93%), Positives = 190/196 (96%)
Query: 1 MVLKNAIALTGGIGTGKSTTIKILESQGYKILDADKIAHQLLQEHRFKIAQHFGSDILEK 60
M+LKNAIALTGGIGTGKSTT+KILESQGYKILDADKIAHQLLQEHR +IAQ FGSDILEK
Sbjct: 1 MILKNAIALTGGIGTGKSTTLKILESQGYKILDADKIAHQLLQEHRLEIAQRFGSDILEK 60
Query: 61 DILNRKKLGAIVFQDAHELKWLEDFLHPLIREHMLKKAYELEKNHQAYFLDIPLFFEVGG 120
DILNRKKLGAIVFQ+A+ELKWLEDFLHPLIRE MLKKA ELEKNHQAYFLDIPLFFEVGG
Sbjct: 61 DILNRKKLGAIVFQNANELKWLEDFLHPLIRECMLKKACELEKNHQAYFLDIPLFFEVGG 120
Query: 121 KKCYPVSKVVLVYASRALQIERLLERDKLKEAEILQRLACQMDIEQKRAMSDYIIDNSSS 180
KK YPVS+VVL+YA RALQIERLLERDKLKEAEILQRLACQMDIEQKRAMSDYIIDNSSS
Sbjct: 121 KKRYPVSRVVLIYAPRALQIERLLERDKLKEAEILQRLACQMDIEQKRAMSDYIIDNSSS 180
Query: 181 LKDLNKQVERFLKTLL 196
LKDLNKQVERFLKTLL
Sbjct: 181 LKDLNKQVERFLKTLL 196
>ref|NP_223859.1| putative ABC transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 228
Score = 30.0 bits (66), Expect = 0.043
Identities = 43/175 (24%), Positives = 70/175 (39%), Gaps = 27/175 (15%)
Query: 7 IALTGGIGTGKSTTIKILESQGYKILDADKIAHQLLQ-EHRFKIAQHFGSDILEKDILNR 65
I L G G GK+T +KIL KI +Q + E + +A D L+ +
Sbjct: 31 IGLLGPNGAGKTTLLKILAGLNLNYQGEVKILNQKIGIETKKSVAFLSDGDFLDPKLTPL 90
Query: 66 KKLGAIV-----FQDAHELKWLEDFLHPLIRE---------HMLKKAYELEKNHQAYFLD 111
K + F ++ L L+ F PL RE L+ L +N Y D
Sbjct: 91 KAIAFYKDFFSDFDESKALNLLKRFSVPLKREFKALSKGMREKLQLILTLSRNASLYLFD 150
Query: 112 IPL----------FFEVGGKKCYPVSKVVLVYASRALQIERLLERD-KLKEAEIL 155
P+ FE+ K+ + + +LV + +E+ L+ LKEA+++
Sbjct: 151 EPVAGIDPIAREEIFELIAKE-FSQNASLLVSTHLVVDVEKYLDSAIFLKEAKVV 204
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 27.3 bits (59), Expect = 0.28
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 40 QLLQEHRFKIAQHFGSDILEKDILNRKKLGAIVFQDAHELKWLE-----DFLHPLIREHM 94
Q + EH I Q F ++ LEK + +K ++F+ L + E +F L +
Sbjct: 554 QEISEHSL-IKQVFSAEELEKSGMVKKGYYGVLFETLEGLGFGEKTDDENFKLTLNQNEF 612
Query: 95 LKKAYELEKNHQAYFLD 111
LKK ELEK +LD
Sbjct: 613 LKKEPELEKLKDEKYLD 629
>ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99]
Length = 552
Score = 26.6 bits (57), Expect = 0.48
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 37 IAHQLLQEHRFKIAQHFGSDILEKDILNRKKLGAIVFQDAHELKWLEDFL---HPLIRE- 92
I+ Q +Q ++ +++ + I+E I+ + K G IV E + +E FL H ++
Sbjct: 98 ISQQKIQAKIEELGENYENAIIEGKIVGKNKGGYIV-----ESQGVEYFLSRSHSSLKND 152
Query: 93 --HMLKKA----YELEKNHQAYFLDIPLFFEVGGKKCYPVSKVVLVYASRALQIER 142
H+ K+ ++K + + + FFEV K+ +SK +L L + R
Sbjct: 153 ANHIGKRIKACIIRVDKENHSINISRKRFFEVNDKRQLEISKELLEATEPVLGVVR 208
>ref|NP_223192.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 330
Score = 26.2 bits (56), Expect = 0.62
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 4 KNAIALTGGIGTGKSTTIK-ILE--SQGYKILDADKIAHQLLQEHRFKIAQHFGSDILEK 60
KN I + GG G+GK+T IK I+E + +I+ + + + H+ FG +I
Sbjct: 172 KNVI-VCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSA 230
Query: 61 DIL 63
D L
Sbjct: 231 DCL 233
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 26.2 bits (56), Expect = 0.62
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 29 YKILDADKIAHQLLQEHRFKIAQHFGSDIL--EKDILNRKKLGAIVFQDAHE 78
Y D+ IA + L+E R KI + +G D L + + + K A Q+AHE
Sbjct: 297 YMRTDSLNIAKEALEEARAKILKDYGKDYLPPKAKVYSSKNKNA---QEAHE 345
>ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE [Helicobacter pylori
J99]
Length = 340
Score = 25.8 bits (55), Expect = 0.81
Identities = 14/36 (38%), Positives = 19/36 (51%)
Query: 32 LDADKIAHQLLQEHRFKIAQHFGSDILEKDILNRKK 67
L+ +K AH L E + KI HF S +E I K+
Sbjct: 222 LEVEKNAHNLNDEVKQKIGYHFQSAAIEHLIQQTKR 257
>ref|NP_222888.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 213
Score = 25.8 bits (55), Expect = 0.81
Identities = 22/71 (30%), Positives = 32/71 (44%), Gaps = 18/71 (25%)
Query: 4 KNAIALTGGIGTGKST--------------TIKILESQGYKILDADKIAHQLLQEHRFKI 49
K ++A+ G G+GKST T+ +LE Q L++ K LL+ R K+
Sbjct: 26 KESLAILGVSGSGKSTLLSHLATMLKPDSGTVSLLEHQDIYALNSKK----LLELRRLKV 81
Query: 50 AQHFGSDILEK 60
F S L K
Sbjct: 82 GIVFQSHYLFK 92
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 533
Score = 25.4 bits (54), Expect = 1.1
Identities = 13/21 (61%), Positives = 14/21 (65%)
Query: 4 KNAIALTGGIGTGKSTTIKIL 24
K+ IAL G G GKST KIL
Sbjct: 347 KDKIALIGPNGVGKSTLCKIL 367
>ref|NP_223372.1| putative [Helicobacter pylori J99]
Length = 133
Score = 25.4 bits (54), Expect = 1.1
Identities = 22/115 (19%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 4 KNAIALTGGIGTGKSTTIKILESQGYKILDADKIAHQLLQEHRFKIAQHFGSDILEKDIL 63
K + L G +G+GK+T ++ + A L+ + + F D +D+
Sbjct: 21 KGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSESV---FHYDFYMRDLE 77
Query: 64 NRKKLG---AIVFQDAHELKWLEDFLHPLIREHMLK-KAYELEKNHQAYFLDIPL 114
+LG ++ + H ++W ++ L +++++ L K E++ + F I +
Sbjct: 78 TCLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVEIKTESTSRFYTIKI 132
>ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99]
Length = 206
Score = 25.4 bits (54), Expect = 1.1
Identities = 22/92 (23%), Positives = 41/92 (43%), Gaps = 9/92 (9%)
Query: 14 GTGKSTTIKILESQGYKILDADKIAHQLLQEHRFKIAQHF----GSDILEKDIL-----N 64
GT K K L+ I D D H++L++H F +IL++ +L +
Sbjct: 82 GTSKIPVEKALKEGKIVIFDIDVQGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDS 141
Query: 65 RKKLGAIVFQDAHELKWLEDFLHPLIREHMLK 96
++ + + E++ LE F + +I E + K
Sbjct: 142 KETIEKRLINAYKEMQCLESFDYLIINEDLEK 173
Score = 23.1 bits (48), Expect = 5.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 5 NAIALTGGIGTGKSTTIKILESQ 27
N + L+G G GKST K L+ +
Sbjct: 6 NLLILSGPSGAGKSTLTKYLQEK 28
>ref|NP_223007.1| DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN [Helicobacter pylori
J99]
Length = 268
Score = 25.0 bits (53), Expect = 1.4
Identities = 36/185 (19%), Positives = 79/185 (42%), Gaps = 29/185 (15%)
Query: 7 IALTGGIGTGKSTTIKILESQGYKILDADKIAHQLLQEHRFKIAQHFGSDILEKDILNRK 66
+++ G G GKSTT KIL G + D+ I + F ++D + +
Sbjct: 42 LSIVGESGCGKSTTAKIL--AGIERQDSGAIYFNGKRHLHFS----------KQDWFDYR 89
Query: 67 KLGAIVFQDAHELKWLEDFLHPLIREHMLKKAYELEKNHQAYFLDI-------------- 112
K ++FQD + + +I E +L ++ +K + L+I
Sbjct: 90 KKVQMIFQDPYSSLNPRWKVGEIIAEPLLLNSHFSKKEIKTKVLEIMQKVGLKLEWIDRY 149
Query: 113 PLFFEVGGKKCYPVSKVVLVYASRALQIERLLERDKLKEAEILQRLACQMDIEQKRAMSD 172
P F G ++ +++ ++++ S + E + D +A++L L +D++++ ++
Sbjct: 150 PHQFSGGQRQRIGIARALILHPSVVICDEPVSALDVSIQAQVLNLL---LDLQKEMGLTY 206
Query: 173 YIIDN 177
I +
Sbjct: 207 IFISH 211
>ref|NP_223778.1| ATP synthase F1, subunit gamma [Helicobacter pylori J99]
Length = 301
Score = 24.6 bits (52), Expect = 1.8
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 65 RKKLGAI--VFQDAHELKWLEDFLHPLIREHMLKKAYELEKNHQAYFLDIPLFFE 117
RKK+G++ + H +K L+ L+KA E+ +N +AY L + F+
Sbjct: 8 RKKIGSVKNTQRITHAMK--------LVSTSKLRKAEEVARNSRAYALKLDAVFD 54
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 24.6 bits (52), Expect = 1.8
Identities = 14/47 (29%), Positives = 27/47 (56%), Gaps = 4/47 (8%)
Query: 153 EILQRL----ACQMDIEQKRAMSDYIIDNSSSLKDLNKQVERFLKTL 195
EI++RL A ++ E+K+ M +I + +DL VE F++++
Sbjct: 196 EIVKRLDALYALALEEEKKQGMPKFINLDMEEFRDLELTVESFMESI 242
>ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter pylori J99]
Length = 533
Score = 24.3 bits (51), Expect = 2.4
Identities = 11/30 (36%), Positives = 19/30 (62%), Gaps = 2/30 (6%)
Query: 89 LIREHMLKKAYELEKNHQAY--FLDIPLFF 116
L + +LKKA +LE +H++ ++PL F
Sbjct: 267 LFKRFVLKKAPQLENSHESVNELFNVPLIF 296
>ref|NP_224044.1| putative [Helicobacter pylori J99]
Length = 792
Score = 24.3 bits (51), Expect = 2.4
Identities = 21/78 (26%), Positives = 41/78 (51%), Gaps = 6/78 (7%)
Query: 36 KIAHQLLQEHRFKIAQHFGSDIL---EKDILNRKKLGAIVFQDAHELKWLEDFLHPLIRE 92
KI +L + A ++ +D+L +K I+ +KL I+ +ELKW + L+ L E
Sbjct: 162 KIDWELAKAEGILDADYYLADLLSDGDKTII--EKLRTILKSSHYELKWGSNTLNKLGLE 219
Query: 93 HMLKKAY-ELEKNHQAYF 109
+ K + + ++ HQ ++
Sbjct: 220 GITKVGFTDNQQAHQEFW 237
>ref|NP_224085.1| THYMIDYLATE KINASE [Helicobacter pylori J99]
Length = 191
Score = 23.5 bits (49), Expect = 4.0
Identities = 12/38 (31%), Positives = 21/38 (54%), Gaps = 3/38 (7%)
Query: 24 LESQGYKILDADKIAHQLLQEHRFKIAQHFGSDILEKD 61
+E+QG + L Q L+ H + + + FG ++LE D
Sbjct: 137 IENQGIEKL---LTIQQKLKTHAYALQEKFGCEVLELD 171
>ref|NP_223451.1| NEURAMINYLLACTOSE-BINDING HEMAGGLUTININ PRECURSOR [Helicobacter
pylori J99]
Length = 260
Score = 23.5 bits (49), Expect = 4.0
Identities = 10/20 (50%), Positives = 16/20 (80%), Gaps = 3/20 (15%)
Query: 19 TTIK---ILESQGYKILDAD 35
TT+K IL++QGYK+++ D
Sbjct: 83 TTLKVEEILQNQGYKVINVD 102
>ref|NP_223145.1| Molybdate ABC transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 265
Score = 23.5 bits (49), Expect = 4.0
Identities = 10/18 (55%), Positives = 13/18 (71%)
Query: 7 IALTGGIGTGKSTTIKIL 24
+AL G G GKST ++IL
Sbjct: 31 VALLGESGAGKSTILRIL 48
>ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylori J99]
Length = 443
Score = 23.5 bits (49), Expect = 4.0
Identities = 17/46 (36%), Positives = 26/46 (55%), Gaps = 3/46 (6%)
Query: 135 SRALQIERLLERDKLKEAEILQRLACQMDIEQKRAMSDYIIDNSSS 180
+ ALQ E + +KLK+ EI Q ++ I QK +D+I + SS
Sbjct: 347 AEALQKEIVALLEKLKKGEITQAELDKIKINQK---ADFISNLESS 389
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 23.1 bits (48), Expect = 5.3
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 13 IGTGKSTTIKILESQGYKILDADKIAHQLLQEHRFKIAQHFGSDILEKDILNRKK 67
+G G+ + L + KI D D + + LL E RF + ++ D R++
Sbjct: 382 VGPGRGSAAGSLVAFALKITDIDPLKYDLLFE-RFLNPERVSMPDIDTDFCQRRR 435
>ref|NP_223710.1| putative [Helicobacter pylori J99]
Length = 243
Score = 23.1 bits (48), Expect = 5.3
Identities = 17/53 (32%), Positives = 26/53 (48%)
Query: 94 MLKKAYELEKNHQAYFLDIPLFFEVGGKKCYPVSKVVLVYASRALQIERLLER 146
MLKKA E K+ + F EV K+ S + ++ R +Q E LL++
Sbjct: 97 MLKKAQEKLKDFNNVRFECMDFLEVKFKEASAFSLLFVLQFVRPMQREVLLKK 149
Score = 22.3 bits (46), Expect = 9.0
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 76 AHELKWLEDFLHPLIREHMLKKAY 99
A L ++ F+ P+ RE +LKK Y
Sbjct: 128 AFSLLFVLQFVRPMQREVLLKKIY 151
>ref|NP_223437.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 455
Score = 23.1 bits (48), Expect = 5.3
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 80 KWLEDFLHPLIREHMLKKAYELEKNHQAYF 109
+W+ D+ P++ E K+ Y+ Q YF
Sbjct: 204 QWIRDWYAPIVTEDGRKEVYDGIHAAQLYF 233
>ref|NP_224076.1| putative amino acid abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 261
Score = 22.7 bits (47), Expect = 6.9
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 7 IALTGGIGTGKSTTIKIL 24
+A+ GG G+GKST ++ +
Sbjct: 38 MAILGGSGSGKSTLLRCM 55
>ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR [Helicobacter
pylori J99]
Length = 277
Score = 22.7 bits (47), Expect = 6.9
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 79 LKWLEDFLHPLIREHMLKKAYE 100
L+WL + + LI LK+AY+
Sbjct: 237 LEWLNNEIDSLISSDFLKEAYQ 258
>ref|NP_223388.1| putative [Helicobacter pylori J99]
Length = 192
Score = 22.7 bits (47), Expect = 6.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 133 YASRALQIERLLERDKLKEAEILQ 156
+ AL++ + LER+ LKE E L+
Sbjct: 36 FNQEALEVFQKLERESLKELESLK 59
>ref|NP_223258.1| putative [Helicobacter pylori J99]
Length = 591
Score = 22.7 bits (47), Expect = 6.9
Identities = 16/46 (34%), Positives = 26/46 (55%), Gaps = 1/46 (2%)
Query: 124 YPVS-KVVLVYASRALQIERLLERDKLKEAEILQRLACQMDIEQKR 168
YP S K VYA R L+ LE + + EIL+ L + ++++K+
Sbjct: 297 YPNSYKTTYVYAPRILKKAVFLEVVEGESLEILRILEGEEEVKKKQ 342
>ref|NP_223243.1| putative [Helicobacter pylori J99]
Length = 678
Score = 22.7 bits (47), Expect = 6.9
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 145 ERDKLKEAEILQRLACQMDIEQKRAMSDYIIDNSSSLKD 183
+ DK++ ++ Q+L E +A+S Y++ + ++LKD
Sbjct: 646 QNDKIEASKFYQQL------ESLKALSYYLLYHGANLKD 678
>ref|NP_223217.1| putative [Helicobacter pylori J99]
Length = 289
Score = 22.7 bits (47), Expect = 6.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 66 KKLGAIVFQDAHELKWLEDFLHPLIREHMLKKAYELEKNHQAYFL 110
+K + ++ H L L+ L + L A EL K HQ Y+L
Sbjct: 169 EKTPVVFYESPHRLLETLRDLNDLAQGMHLFAAKELTKLHQQYYL 213
>ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 541
Score = 22.7 bits (47), Expect = 6.9
Identities = 16/58 (27%), Positives = 25/58 (42%)
Query: 110 LDIPLFFEVGGKKCYPVSKVVLVYASRALQIERLLERDKLKEAEILQRLACQMDIEQK 167
LD L F+V K S + +I +LE+ + EILQ ++ E+K
Sbjct: 400 LDTHLEFDVNTLKKQDSSNPIYYIHYANSRIHTMLEKSPFSKEEILQTPLKNLNAEEK 457
>ref|NP_223483.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 273
Score = 22.3 bits (46), Expect = 9.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 75 DAHELKWLEDFLHPLIREHM 94
DA K E LHPL+++H+
Sbjct: 41 DAIYSKTFEGGLHPLVKKHL 60
>ref|NP_223303.1| putative 3-HYDROXYACID DEHYDROGENASE [Helicobacter pylori J99]
Length = 285
Score = 22.3 bits (46), Expect = 9.0
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 62 ILNRKKLGAIVFQDAHELKWLEDFLHPLIREHMLKKAYELEKNHQAYFLDIPLFFE 117
I+ + + + +FQ A + WL+D ++ K L KN + +P F+
Sbjct: 201 IIGQSGMNSPLFQ-AKKGMWLQDNYPAAFSLKLMAKDIRLAKNEAGEAMKLPFLFQ 255
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.139 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,200
Number of Sequences: 1491
Number of extensions: 9628
Number of successful extensions: 68
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 37
length of query: 196
length of database: 494,079
effective HSP length: 73
effective length of query: 123
effective length of database: 385,236
effective search space: 47384028
effective search space used: 47384028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)