BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645452|ref|NP_207626.1| hypothetical protein
[Helicobacter pylori 26695]
(292 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223490.1| putative [Helicobacter pylori J99] 491 e-141
ref|NP_223417.1| putative [Helicobacter pylori J99] 29 0.17
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 29 0.17
ref|NP_223655.1| putative [Helicobacter pylori J99] 28 0.22
ref|NP_223560.1| putative [Helicobacter pylori J99] 28 0.22
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 28 0.37
ref|NP_223787.1| putative [Helicobacter pylori J99] 27 0.48
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 27 0.82
ref|NP_222796.1| putative [Helicobacter pylori J99] 27 0.82
ref|NP_223333.1| ASPARTATE AMINOTRANSFERASE [Helicobacter p... 26 1.1
ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 26 1.4
ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter... 25 1.8
ref|NP_223122.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 25 2.4
ref|NP_223555.1| Hydrogenase expression/formation protein [... 25 3.1
ref|NP_223097.1| putative RIBOSOME-BINDING FACTOR A [Helico... 25 3.1
ref|NP_222978.1| putative [Helicobacter pylori J99] 25 3.1
ref|NP_223924.1| putative [Helicobacter pylori J99] 24 4.1
ref|NP_223792.1| TRNA (GUANINE-N1)-METHYLTRANSFERASE [Helic... 24 4.1
ref|NP_223039.1| putative [Helicobacter pylori J99] 24 4.1
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 24 5.3
ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 23 7.0
ref|NP_224030.1| putative [Helicobacter pylori J99] 23 7.0
ref|NP_223901.1| NADH oxidoreductase I [Helicobacter pylori... 23 7.0
ref|NP_223732.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [He... 23 7.0
ref|NP_223534.1| putative [Helicobacter pylori J99] 23 7.0
ref|NP_223661.1| putative [Helicobacter pylori J99] 23 9.1
ref|NP_223644.1| putative [Helicobacter pylori J99] 23 9.1
ref|NP_223402.1| putative [Helicobacter pylori J99] 23 9.1
ref|NP_223209.1| cag island protein [Helicobacter pylori J99] 23 9.1
ref|NP_222911.1| putative [Helicobacter pylori J99] 23 9.1
>ref|NP_223490.1| putative [Helicobacter pylori J99]
Length = 296
Score = 491 bits (1264), Expect = e-141
Identities = 247/292 (84%), Positives = 267/292 (90%), Gaps = 2/292 (0%)
Query: 1 MFLVKKIGVVIVVLIGFLACSQERFIQLQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQ 60
MFLVKKIGVVI++L+ FLACSQE FI++QKKAQEQENDGSKRPSYVDSDYEVFSETIFLQ
Sbjct: 1 MFLVKKIGVVIMILVCFLACSQESFIKMQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQ 60
Query: 61 NMVYQPTEERDSFAQLTKDENDSFNPETSVILLNEPSDSDTKNPPLNQNESNTN--TANN 118
NMVYQP EER++F QLTKDE++SFNPE SVILLNEPSD+ KN N+ N N ANN
Sbjct: 61 NMVYQPIEERNAFFQLTKDEDNSFNPENSVILLNEPSDNSEKNLLSYPNDPNNNEDNANN 120
Query: 119 DTKNPFLYKPKRKTKDPKLIEYSQQNFYPLKDGDIMMSKEGDQWLIEIKSKALKRFLKDQ 178
KNPFLYKPKRKTK+PKLIEYSQQ+FYPLK+GDI+MSKEGDQWLIEI+SKALKRFLKDQ
Sbjct: 121 SQKNPFLYKPKRKTKNPKLIEYSQQDFYPLKNGDIIMSKEGDQWLIEIQSKALKRFLKDQ 180
Query: 179 NDKDRQIQTFTFNDTKTQIAQFKGKISSYVYTTNNSDLSLRPFYESFLLEKKSDDFYTIG 238
NDKDRQIQTFTFNDTKTQIAQ KGKISSYVYTTNN LSLRPFYESFLLEKKSD+ YTI
Sbjct: 181 NDKDRQIQTFTFNDTKTQIAQIKGKISSYVYTTNNGSLSLRPFYESFLLEKKSDNVYTIE 240
Query: 239 DKALDAIEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERFKSNTELFLEC 290
+KALD +EISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERFKS+TELFLEC
Sbjct: 241 NKALDTMEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERFKSDTELFLEC 292
>ref|NP_223417.1| putative [Helicobacter pylori J99]
Length = 185
Score = 28.9 bits (63), Expect = 0.17
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 25/105 (23%)
Query: 2 FLVKKIGVVIVVLIGFLACSQERFIQLQKKAQEQENDGSKRPS---YVDSDYEVFSETIF 58
+ ++ I +V +VL+GF AC +K+Q+ +N+ +++ S Y D
Sbjct: 6 YFLRFIALVFIVLLGFSACKN------SQKSQDSQNNTTQQDSPKTYTAMD--------- 50
Query: 59 LQNMVYQPTEERDSFAQLTKDENDSFNPETSVILLNEPSDSDTKN 103
L N Y + DS N S +P T +L+ D+ K+
Sbjct: 51 LNNQEYTIMGDLDSL-------NISPDPNTPTLLILSALDNSLKD 88
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 28.9 bits (63), Expect = 0.17
Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 23/172 (13%)
Query: 107 NQNESNTNTANNDTKNP-FLYKPKRKTKDPKLIEYSQQNFYPLKDGDIMMSKEGDQWLIE 165
N+N+ + N K+ F K +D + I Y+Q LK +S + +E
Sbjct: 642 NKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQN----LKGIKRELSDK-----LE 692
Query: 166 IKSKALKRFLKDQNDKDRQIQTFTFNDTKTQIAQFKGKISS------YVYTTNNSDLSLR 219
+K LK F K D+ + + F+ + + KG + ++ N + +L
Sbjct: 693 NINKDLKDFSKSF-DEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALN 751
Query: 220 PFYESFLLEKKSDDFYTIGDKALDAIEISKCQMVLKKHSTDKLDSQHKAISI 271
F K+ DF + D +E S +++ + TDK+D+ ++A+S+
Sbjct: 752 EFKNG-----KNKDFSKVTQAKSD-LENSIKDVIINQKITDKVDNLNQAVSV 797
>ref|NP_223655.1| putative [Helicobacter pylori J99]
Length = 416
Score = 28.5 bits (62), Expect = 0.22
Identities = 47/220 (21%), Positives = 86/220 (38%), Gaps = 22/220 (10%)
Query: 14 LIGFLACSQERFIQLQKKAQEQENDGSKRPSYVDSDYEVFSETIF--------LQNMVYQ 65
+IG + S +R+ ++ KAQ Q N K + +++ + S + LQN YQ
Sbjct: 37 IIGKMVDSIKRYEEIISKAQAQVNQLQKVNNMINTTNSLISSSAITLANPMQVLQNAQYQ 96
Query: 66 PTEERDSFAQLTKDENDSFNPETSVILLNEPSDSDTKNPPLNQNE-SNTNTANNDTKNPF 124
R ++ L K +++N + +L N+ P LN N +N N N
Sbjct: 97 IESIRYNYENL-KQSIENWNAQN--LLRNKYLQQQC--PWLNVNALTNNKIVNLKDLNNL 151
Query: 125 LYKPKRKTKDPKLIEYSQQNFYPLKDGDIMM---SKEGDQWLIEIKSKALKRFLKDQNDK 181
+ K +T+ + ++ Q+ G++ G W + L + + D N +
Sbjct: 152 ITKNGEQTQTARDVQNLIQSISGSGYGNMQSLAGELSGRAW-----GEMLCKMVNDSNYE 206
Query: 182 DRQIQTFTFNDTKTQIAQFKGKISSYVYTTNNSDLSLRPF 221
Q T N+ + Q +F ++ V L PF
Sbjct: 207 SEQALLATGNNPEEQKRRFLLRVKKKVNDNKQLKDKLDPF 246
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 28.5 bits (62), Expect = 0.22
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 74 AQLTKDENDSFNPETSVILLNE--------PSDSDTKNPPLNQNESNTNTANNDTKNPFL 125
AQ E + NP+T L++ S++ N P N+N N ANN KNP
Sbjct: 115 AQHETHEANETNPKTPNETLSKNEKKPNEVASNAHQTNLP-NKNPITPNHANNAIKNP-- 171
Query: 126 YKPKRKTKDPKLIE 139
P KDPK ++
Sbjct: 172 TTPTHNVKDPKTLK 185
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 27.7 bits (60), Expect = 0.37
Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 40/174 (22%)
Query: 44 SYVDSDYEVFSETIF-----------LQNMVYQPTEERDSFAQLTKDENDSFNPETSVIL 92
S +DS+ ++FS +F LQ + ++F + K+ ++ +
Sbjct: 126 SVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKNYYTNAFIKPQKENQENMSE------ 179
Query: 93 LNEPSDSDTKNPPLNQNESNTNTANNDT------KNPFLYKPKRKTKDPKLIEYSQQNFY 146
N P D+ N PL + + T +T N K K K ++ SQ+ +Y
Sbjct: 180 -NAPKDAQKNNKPLKEEKEETKEKEEETIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWY 238
Query: 147 PLKDGDIMMSKEGDQWLIEIKSKALKRFLKDQNDKDRQIQTFTFNDTKTQIAQF 200
L W KSK + + D+Q F F D + +++F
Sbjct: 239 CL-------------WACSKKSKL--SLMPKEIFNDKQFTYFKF-DKRLALSKF 276
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 27.3 bits (59), Expect = 0.48
Identities = 25/110 (22%), Positives = 44/110 (39%), Gaps = 12/110 (10%)
Query: 109 NESNTNTANNDTKNPFLYKPKRKTKDPKLIEYSQQNFYPLKDGDIMMSKEGDQWLIEIKS 168
N+ N N+ L + K K ++ + +N Y + + EG + + K
Sbjct: 131 NKENEKKIKNEASLQVLTQKKEK-EEKDFTDSCWKNLYKKNEEEFKEILEGFKRKEKFKG 189
Query: 169 KALKRFLKDQNDKDRQIQTFTFNDTKTQIAQFKGKISSYVYTTNNSDLSL 218
K LK F +NDK Q + K +I V++ N ++L+L
Sbjct: 190 KILKEF---ENDKHNQSEIVGLEKLKEKI--------EIVFSKNQTELAL 228
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 26.6 bits (57), Expect = 0.82
Identities = 22/101 (21%), Positives = 42/101 (40%), Gaps = 13/101 (12%)
Query: 37 NDGSKRPSYVDSDYEVFSETIFLQNMVYQPTEERDSFAQLTKDENDSFN---PETSVILL 93
+D K+ + D + E E +N T +SF + N + N P+ ++ +
Sbjct: 181 SDSQKKETNNDKEKENLKENPIDEN---HNTPNEESFLAIPTPYNTTLNNSEPQEGLVQI 237
Query: 94 NEPSDSDTKNPPLNQNESNTNTANNDTKNPFLYKPKRKTKD 134
+ +PP + +D NP L +PK++TK+
Sbjct: 238 SP-------HPPTHYTIYPKRNRFDDLTNPTLKEPKQETKE 271
>ref|NP_222796.1| putative [Helicobacter pylori J99]
Length = 590
Score = 26.6 bits (57), Expect = 0.82
Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 16/142 (11%)
Query: 27 QLQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQNMVYQPTEERDSFAQLTKDENDSFNP 86
QL ++Q+ S++ + VD + + ++V D ++ D+ D N
Sbjct: 365 QLDNDLKDQKGLSSEQQAQVDKALDSVQQLSHSSDVV---GNYLDGSLKIDGDDRDDLND 421
Query: 87 ETSVILLNEPSDSDTKNPPLNQNESNTNTANNDTKNPFLYKPKRKTK--------DPKLI 138
+N P + P+N ++ + D L P T D
Sbjct: 422 A-----INNPMQQPAQQTPINNMDNTHANDSKDQGGNALINPNNATNDDHNDDHMDTNTT 476
Query: 139 EYSQQNFYPLKDGDIMMSKEGD 160
+ S N P D D + GD
Sbjct: 477 DTSNANDTPTDDKDASGNNTGD 498
>ref|NP_223333.1| ASPARTATE AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 390
Score = 26.2 bits (56), Expect = 1.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 67 TEERDSFAQLTKDENDSFNPETSVILLNEPSD 98
T+E+ F K D+ +P+T +++L PS+
Sbjct: 143 TDEKSHFKITPKQLKDALSPKTKMLILTTPSN 174
>ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 198
Score = 25.8 bits (55), Expect = 1.4
Identities = 34/151 (22%), Positives = 58/151 (37%), Gaps = 24/151 (15%)
Query: 3 LVKKIGVVIVVLIGFLACSQERFIQLQKKAQEQEND---GSKRPSYVDSDYEVFSETIFL 59
+V + +V+VVL+ ++ + A ND G+K P+ + +F +F+
Sbjct: 10 IVLAVLIVVVVLL-------QKSSSIGLGAYSGSNDSLFGAKGPASFMAKLTMFLGLLFV 62
Query: 60 QNMVYQPTEERDSFAQLTKDE---NDSFNPETSVILLNEPSDSDTKNPPLNQNE-SNTNT 115
N + + + DE N +P P+ + T NP LN E + TN
Sbjct: 63 INTIALGYFYNKEYGKSVLDETKTNKELSPLVPATGTLNPTLNPTLNPTLNPLEQAPTNP 122
Query: 116 A----------NNDTKNPFLYKPKRKTKDPK 136
K PF+ PK+ K+ K
Sbjct: 123 LMPTQTPKELPKEPAKTPFVESPKQNEKNEK 153
>ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter pylori J99]
Length = 796
Score = 25.4 bits (54), Expect = 1.8
Identities = 10/28 (35%), Positives = 16/28 (56%)
Query: 95 EPSDSDTKNPPLNQNESNTNTANNDTKN 122
+P D +T+NP N NT T++ T +
Sbjct: 732 DPEDVNTRNPRCNAGSVNTLTSSRPTSS 759
>ref|NP_223122.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 298
Score = 25.0 bits (53), Expect = 2.4
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 19/131 (14%)
Query: 162 WLIEIKSKALKRFLKDQNDKDRQIQTFTFNDTKTQIAQFKGKISSYVYTTNNSDLSLRPF 221
++I S+ L Q K+RQ+ F+F F K +++ N D RPF
Sbjct: 144 FIIHAPSQELANAYLLQYAKERQMD-FSF---------FSLKDTTWKELYKNKDKLERPF 193
Query: 222 YESFLLEKKSDDFYTIGDKALDAIEISK-CQMVLKKHSTDKLDSQHKAISIDLDFKKERF 280
Y L E K D+ L +E+++ C +VL + L+ K +SI+ +
Sbjct: 194 YIMHLEELKKDE-------QLKLLELARSCPIVLSYTHKEPLEFP-KIMSIECGNRPLSL 245
Query: 281 KSNTELFLECQ 291
S+ FL Q
Sbjct: 246 FSDNTTFLSIQ 256
>ref|NP_223555.1| Hydrogenase expression/formation protein [Helicobacter pylori J99]
Length = 242
Score = 24.6 bits (52), Expect = 3.1
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 181 KDRQIQTFTFNDTKTQIAQFKGKISSYVYTTNNSDLSLRPFYESFLLEKKSDDF 234
K I+ F F ++ + K K + ++ ++ D +++FLLEKK +++
Sbjct: 183 KADMIEVFNFRVSQVKEDMQKLKPEAPIFLMSSKDPKSLEDFKNFLLEKKRENY 236
>ref|NP_223097.1| putative RIBOSOME-BINDING FACTOR A [Helicobacter pylori J99]
Length = 111
Score = 24.6 bits (52), Expect = 3.1
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 223 ESFLLEKKSDDFYTIGDKALDAIEISKCQMVLKKHS--TDKLDSQHKAIS 270
ES LLE + ++ D L+++ ++K + KH L S HK +S
Sbjct: 9 ESNLLELLQEALASLNDSELNSLSVTKVECSKGKHHALVFVLSSDHKILS 58
>ref|NP_222978.1| putative [Helicobacter pylori J99]
Length = 177
Score = 24.6 bits (52), Expect = 3.1
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 92 LLNEPSDSDTKNPPLNQNESNTNTANNDTKNPFLYKPKRKTKDPKLIEYSQQNFYPLKDG 151
LLN D T N +S + +K F + + K + +YS+ F+PL DG
Sbjct: 98 LLNIVPDLITINSIEIDQQSVVVSGKTPSKEAFYFLFQNKLNP--MFDYSRAEFFPLSDG 155
>ref|NP_223924.1| putative [Helicobacter pylori J99]
Length = 182
Score = 24.3 bits (51), Expect = 4.1
Identities = 9/21 (42%), Positives = 14/21 (65%)
Query: 184 QIQTFTFNDTKTQIAQFKGKI 204
+++ FTFN+T+ F GKI
Sbjct: 32 EVKHFTFNETRGAFDNFDGKI 52
>ref|NP_223792.1| TRNA (GUANINE-N1)-METHYLTRANSFERASE [Helicobacter pylori J99]
Length = 229
Score = 24.3 bits (51), Expect = 4.1
Identities = 16/54 (29%), Positives = 26/54 (47%), Gaps = 4/54 (7%)
Query: 108 QNESNTNTANNDTKNP----FLYKPKRKTKDPKLIEYSQQNFYPLKDGDIMMSK 157
Q+ N + NN + P ++K K K P +EYS+ N +K + +SK
Sbjct: 160 QSLENESFENNYLETPNFANAVFKSKEINKIPAPLEYSKGNHAKIKQLKLDLSK 213
>ref|NP_223039.1| putative [Helicobacter pylori J99]
Length = 186
Score = 24.3 bits (51), Expect = 4.1
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 3 LVKKIGVVIVVLIGFLACSQERFIQLQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQNM 62
L+ K GV+++ SQ+ F +Q+K Q +EN ++ ++E S +
Sbjct: 83 LLIKWGVIVISARKCYQFSQKMFALIQRKRQIRENLKNRSNRKDAKNFEKLSN---IAEE 139
Query: 63 VYQPTEERDSFAQLTKDEN--DSFNPETSVILLNEPSD 98
+ +E + + DEN D + T ++L + +
Sbjct: 140 IISKKQEESHHKEDSNDENHKDKLSNITEEMILKKQEE 177
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 23.9 bits (50), Expect = 5.3
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 96 PSDSDTKNP---PLNQNESNTNTANN 118
P+ SDT +N+N NTNT NN
Sbjct: 197 PALSDTNTELKFTINKNNGNTNTNNN 222
>ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 624
Score = 23.5 bits (49), Expect = 7.0
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 30 KKAQEQENDGSKRPSYVDSDYEVFSETIFLQNMVYQPTEERDSF 73
K Q+ N +K ++++ V +T L+N+ P E+++SF
Sbjct: 442 KTKQDFINGNAKYITFLNVLNNVIIDTSILENVKIYPNEKQNSF 485
Score = 23.5 bits (49), Expect = 7.0
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 30 KKAQEQENDGSKRPSYVDSDYEVFSETIFLQNMVYQPTEERDSF 73
K Q+ N +K ++++ V +T L+N+ P E+++SF
Sbjct: 238 KTKQDFINGNAKYITFLNVLNNVIIDTSILENVKIYPNEKQNSF 281
>ref|NP_224030.1| putative [Helicobacter pylori J99]
Length = 553
Score = 23.5 bits (49), Expect = 7.0
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 166 IKSKALKRFLKDQNDKDRQIQT-FTFNDTKTQIAQFKGKISS------------YVYTTN 212
+ + L L ++ +++R+ F F+DT ++ A S + + N
Sbjct: 247 VPNNPLSSELANERERERESNNLFVFSDTISKEAHTSDVFESLLNYSDAETTKPWYHYHN 306
Query: 213 NSDLSLRPFYESFLLEKKSDDFYTI 237
D+ R YE+F LEK+ D + I
Sbjct: 307 MIDIFKRSHYETFWLEKQIVDEWGI 331
>ref|NP_223901.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 265
Score = 23.5 bits (49), Expect = 7.0
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 121 KNPFLYKPKRKTKDPKLIEYSQQNFYPLKDGDIMMSKEGDQWLIEIKSKALKRFL-KDQN 179
K+P+L KR + + YPLK + E D+ I K + + K+Q
Sbjct: 157 KHPYL---KRLIMPHDWVGHPLLRSYPLKGDEFAQWYEVDK----IFGKEYREVVGKEQR 209
Query: 180 DKDRQIQTFTFNDTKTQIAQFKGK 203
D R + TFN K Q KG+
Sbjct: 210 DSARVDEKDTFNFAKIGYEQGKGE 233
>ref|NP_223732.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [Helicobacter pylori J99]
Length = 378
Score = 23.5 bits (49), Expect = 7.0
Identities = 15/52 (28%), Positives = 25/52 (47%), Gaps = 1/52 (1%)
Query: 226 LLEKKSDDFYTIGDKALDAIEISKCQMVLKKHSTDKLDSQHKAISIDLDFKK 277
L+ KK+ ++ D A ++EI Q + KK+S L A+ + KK
Sbjct: 117 LITKKTKAIVSV-DYAGKSVEIESIQRLCKKYSLSFLSDSSHALGSEYQNKK 167
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 23.5 bits (49), Expect = 7.0
Identities = 13/47 (27%), Positives = 26/47 (54%), Gaps = 5/47 (10%)
Query: 136 KLIEYSQQNFYPLKDGDIMMSKEGDQWLIEIKSKALKRFLKDQNDKD 182
+L + ++ +Y K+ + + + I+IKS A KRF + + D+D
Sbjct: 61 ELQQLEEEEYYEKKELTLYQTHD-----IKIKSNAYKRFFEVKVDED 102
>ref|NP_223661.1| putative [Helicobacter pylori J99]
Length = 255
Score = 23.1 bits (48), Expect = 9.1
Identities = 29/127 (22%), Positives = 46/127 (35%), Gaps = 26/127 (20%)
Query: 30 KKAQEQENDGSKRPSYVDSDYEVFSETIFLQNMVYQPTEERDSFAQLTKDENDSFNPETS 89
K+A ++ S+ + +S F+E QN V Q + + TK N N S
Sbjct: 128 KEASKENASMSEELTQNNSKLSHFNENSIAQNSVGQNNVKEPN----TKSNNSKQNHSLS 183
Query: 90 VILLNEPSDSDTKNPPLNQNESNTN---------TANNDTKNPF-------------LYK 127
L +D + + +N+ + N T D K P+ LY
Sbjct: 184 NSDLTSNTDYNKLVADMFENQMDANGNYIGKKFSTQAYDNKTPYKVATGNASEYSSYLYS 243
Query: 128 PKRKTKD 134
K K+KD
Sbjct: 244 KKTKSKD 250
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 23.1 bits (48), Expect = 9.1
Identities = 11/54 (20%), Positives = 24/54 (44%)
Query: 69 ERDSFAQLTKDENDSFNPETSVILLNEPSDSDTKNPPLNQNESNTNTANNDTKN 122
+ ++F + K+ D ++ I+ + ++ +N N N NT +T N
Sbjct: 399 DTNNFEKAYKERYDKLVSLSAAIIQAKEGGNERQNSSANNNNPIKNTIETNTSN 452
>ref|NP_223402.1| putative [Helicobacter pylori J99]
Length = 400
Score = 23.1 bits (48), Expect = 9.1
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 217 SLRPFYESFLLEKKSDDFYTIGDKALDAIEISKCQMVLKKHSTDKLDSQHKA 268
+LR LE ++DD D A++ +C++ +KK++ + S+++A
Sbjct: 217 ALRVLKPRGFLELRTDDSLCFEDSLKLALKNFQCEIEIKKNAQIPVVSKYEA 268
>ref|NP_223209.1| cag island protein [Helicobacter pylori J99]
Length = 268
Score = 23.1 bits (48), Expect = 9.1
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 173 RFLKDQNDKDRQIQTFTFNDTKTQIAQFKGKISSYVYTTNNSDLSLRPFYESFLLE 228
RF K+ ND +T + I GK + + NNS +SL Y F+LE
Sbjct: 111 RFFKEINDGQDPQKTLS-----RLIPLQSGKNDASSFKANNSFVSLVYVYAYFMLE 161
>ref|NP_222911.1| putative [Helicobacter pylori J99]
Length = 127
Score = 23.1 bits (48), Expect = 9.1
Identities = 16/62 (25%), Positives = 28/62 (44%)
Query: 87 ETSVILLNEPSDSDTKNPPLNQNESNTNTANNDTKNPFLYKPKRKTKDPKLIEYSQQNFY 146
++S++ + +D L N N+ A + F K K++ ++YSQQ FY
Sbjct: 41 DSSLLSITSMNDEPVVIKNLIVNRGNSCEATKKVEPKFGDKFKKEKLFDHELKYSQQIFY 100
Query: 147 PL 148
L
Sbjct: 101 RL 102
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.132 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 332,318
Number of Sequences: 1491
Number of extensions: 16671
Number of successful extensions: 80
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 35
length of query: 292
length of database: 494,079
effective HSP length: 77
effective length of query: 215
effective length of database: 379,272
effective search space: 81543480
effective search space used: 81543480
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)