BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645455|ref|NP_207629.1| hypothetical protein
[Helicobacter pylori 26695]
(119 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223493.1| putative [Helicobacter pylori J99] 200 8e-54
ref|NP_223219.1| putative [Helicobacter pylori J99] 27 0.12
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 27 0.21
ref|NP_223680.1| putative POLYSACCHARIDE BIOSYNTHESIS PROTE... 25 0.78
ref|NP_223158.1| putative [Helicobacter pylori J99] 25 0.78
ref|NP_222810.1| putative [Helicobacter pylori J99] 23 2.3
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 22 3.9
ref|NP_223770.1| putative [Helicobacter pylori J99] 22 3.9
ref|NP_223771.1| putative Outer membrane protein [Helicobac... 22 5.1
ref|NP_223725.1| putative outer membrane protein [Helicobac... 22 5.1
ref|NP_222972.1| DIHYDROOROTASE [Helicobacter pylori J99] 22 5.1
ref|NP_223192.1| cag island protein, DNA transfer protein [... 21 8.7
>ref|NP_223493.1| putative [Helicobacter pylori J99]
Length = 201
Score = 200 bits (509), Expect = 8e-54
Identities = 97/99 (97%), Positives = 99/99 (99%)
Query: 3 MRLHTAFFGINSLLVASLLISGCSLFKKRNTNAQLIPPSANGLQAPIYPPTNFTPRKSIQ 62
MRLHTAFFGINSLLVA+LLISGCSLFKKRNTNAQLIPPSANGLQAPIYPPTNFTPRKSIQ
Sbjct: 1 MRLHTAFFGINSLLVATLLISGCSLFKKRNTNAQLIPPSANGLQAPIYPPTNFTPRKSIQ 60
Query: 63 PLPSPRLENNDQPVISSNPTNAIPNTPILTPNNVIELNA 101
PLPSPRLENNDQP+ISSNPTNAIPNTPILTPNNVIELNA
Sbjct: 61 PLPSPRLENNDQPIISSNPTNAIPNTPILTPNNVIELNA 99
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 27.3 bits (59), Expect = 0.12
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 15 LLVASLLISGCSLFKKRNTNAQLIPPSANGLQAPIYPPTNFTPRKSIQPLPSPRLENNDQ 74
+LV ++ + SL ++R + P + N + TN T K ++P P ++ +Q
Sbjct: 163 ILVVVIIQNSSSLKEEREQERAIKPDTKNNS----FNETNPTEEKKLEPTPKLEEKHKEQ 218
Query: 75 PVISSNPTNAIPNTPILTPNNVI 97
PNT + P I
Sbjct: 219 DKQGKEAIKENPNTIYIIPKRDI 241
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 26.6 bits (57), Expect = 0.21
Identities = 13/36 (36%), Positives = 18/36 (49%)
Query: 40 PSANGLQAPIYPPTNFTPRKSIQPLPSPRLENNDQP 75
P+ G Q P PPT TP +P+ P+ E +P
Sbjct: 86 PTLAGPQKPPTPPTPPTPPTPPKPIEKPKPEPKPKP 121
>ref|NP_223680.1| putative POLYSACCHARIDE BIOSYNTHESIS PROTEIN [Helicobacter pylori
J99]
Length = 389
Score = 24.6 bits (52), Expect = 0.78
Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 5/40 (12%)
Query: 75 PVISSNPTNA-----IPNTPILTPNNVIELNAWAWAWLQN 109
PVI+++P +A + + PNN +L+A WL+N
Sbjct: 301 PVIANSPLSATRQFALDERSLFEPNNAKDLSAKIDWWLEN 340
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 24.6 bits (52), Expect = 0.78
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 50 YPPTNFTPRKSIQPLPSPRLENNDQPVI--SSNPT 82
Y NF + +P PS +N QP+ +NPT
Sbjct: 165 YSDRNFKDFRDARPQPSASKDNGTQPITLDGNNPT 199
>ref|NP_222810.1| putative [Helicobacter pylori J99]
Length = 237
Score = 23.1 bits (48), Expect = 2.3
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 15 LLVASLLISGCSLFKKRNTNAQLIPPSANGLQAPIYPPTNFTPRKSIQPLPSPRLENNDQ 74
L+ +LLISGC+ +K + + NG+Q + T + ++ S N+
Sbjct: 6 LVAIALLISGCASYK---ITPEHVTSYNNGIQ--VMTSTQARSKVQLEIAQSKLKGLNES 60
Query: 75 PVISSNPTNAIPNTPILTPNNVIELN 100
P++ + P++ I ++
Sbjct: 61 PLVLYVAAQVLEGKPVVFSRKAISVS 86
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 22.3 bits (46), Expect = 3.9
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 33 TNAQLIPPSANGLQAPIYP-PTNFTPRKSIQPLPSPRLENNDQPVISSNP 81
TNA+ P + P P P+K +P P P+ + +P P
Sbjct: 66 TNAESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKP 115
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 22.3 bits (46), Expect = 3.9
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 61 IQPLPSPRLENNDQPVISSNPTNAIPNTPILTPNN 95
IQ + E ++P+ SS P N P TP N
Sbjct: 152 IQKALKEQEEKAEKPLKSSTPANKNPPLKAETPKN 186
>ref|NP_223771.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 179
Score = 21.9 bits (45), Expect = 5.1
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 14 SLLVASLLISGCSLFKKRNTNAQLIPPSANGLQ-APIYPPTNFTPRKSIQPLPSPRLENN 72
S LVA LL+ GCS T A + S +Q AP+ T P K +P P
Sbjct: 8 SFLVAFLLVVGCSHKMDNKTVAGDV--STKAVQTAPV--TTEPAPEKE-EPKQEPAPVVE 62
Query: 73 DQPVISS 79
++P I S
Sbjct: 63 EKPAIES 69
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 21.9 bits (45), Expect = 5.1
Identities = 13/48 (27%), Positives = 18/48 (37%)
Query: 68 RLENNDQPVISSNPTNAIPNTPILTPNNVIELNAWAWAWLQNPPFHPL 115
R +QP SN N+I P +I + W L N P+
Sbjct: 494 RFGGKNQPAFPSNYPNSIYTNCAQVPAGLIGVTTAVWQQLINQNALPI 541
>ref|NP_222972.1| DIHYDROOROTASE [Helicobacter pylori J99]
Length = 378
Score = 21.9 bits (45), Expect = 5.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 26 SLFKKRNTNAQLIPPSANGLQA 47
SL +N+NAQL SA G ++
Sbjct: 260 SLHASKNSNAQLFEESAFGCES 281
>ref|NP_223192.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 330
Score = 21.2 bits (43), Expect = 8.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 69 LENNDQPVISSNPTNAIPNTPILTPNNV 96
++N + P++SSN N +L+P V
Sbjct: 96 IDNYENPILSSNLANGERVQIVLSPVTV 123
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.135 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,704
Number of Sequences: 1491
Number of extensions: 5278
Number of successful extensions: 19
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 12
length of query: 119
length of database: 494,079
effective HSP length: 67
effective length of query: 52
effective length of database: 394,182
effective search space: 20497464
effective search space used: 20497464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)