BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645456|ref|NP_207630.1| hypothetical protein
[Helicobacter pylori 26695]
(102 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223493.1| putative [Helicobacter pylori J99] 197 5e-53
ref|NP_224088.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN ... 22 2.8
ref|NP_224005.1| ROD SHAPE-DETERMINING PROTEIN [Helicobacte... 22 2.8
ref|NP_222962.1| putative [Helicobacter pylori J99] 22 4.8
ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacte... 22 4.8
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 21 6.2
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 21 6.2
ref|NP_223734.1| PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE... 21 8.1
ref|NP_222904.1| S-adenosylmethionine synthetase [Helicobac... 21 8.1
>ref|NP_223493.1| putative [Helicobacter pylori J99]
Length = 201
Score = 197 bits (501), Expect = 5e-53
Identities = 100/102 (98%), Positives = 102/102 (99%)
Query: 1 MGMGVAPESTISPSQALALAKRAAIVDGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTR 60
+GMGVAPESTISPSQALALAKRAAIVDGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTR
Sbjct: 100 VGMGVAPESTISPSQALALAKRAAIVDGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTR 159
Query: 61 VNALIRNAEITETIYKDGLCQVSMELKLDGRIWYRILSGARG 102
VNALIRNAEITETIYKDGLCQVSMELKLDGRIWYRILSG+RG
Sbjct: 160 VNALIRNAEITETIYKDGLCQVSMELKLDGRIWYRILSGSRG 201
>ref|NP_224088.1| putative [Helicobacter pylori J99]
Length = 218
Score = 22.7 bits (47), Expect = 2.1
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 55 SVIKTRVNALIRNAEITETIYKDGLCQVSMELK 87
S KT+ ++R +I +Y++G + + LK
Sbjct: 151 SADKTQALIIVRKNDIITGVYEEGQISIEISLK 183
>ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Helicobacter pylori J99]
Length = 457
Score = 22.3 bits (46), Expect = 2.8
Identities = 14/43 (32%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
Query: 34 EKMYGIRVNAQDTVKDMVLQNSVIKTRVNALIRNAEITETIYK 76
E M I + D ++ M + ++IK VNA + NA I + K
Sbjct: 296 EVMEYIAQHISDNIRQM--EGAIIKISVNANLMNATIDLNLAK 336
>ref|NP_224005.1| ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99]
Length = 347
Score = 22.3 bits (46), Expect = 2.8
Identities = 15/47 (31%), Positives = 25/47 (52%), Gaps = 2/47 (4%)
Query: 24 AIVDGYRQLGEKMYGIRVNAQ-DTVKDMVLQNSVIKTRVNALIRNAE 69
AI D R++ + + + D V+D+V QN V+ T ALI+ +
Sbjct: 260 AIKDQVREISSALRSVLEEVKPDLVRDIV-QNGVVLTGGGALIKGLD 305
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 21.6 bits (44), Expect = 4.8
Identities = 12/64 (18%), Positives = 32/64 (49%), Gaps = 3/64 (4%)
Query: 16 ALALAKRAAIVDGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTR---VNALIRNAEITE 72
A+ +K+A + + RQL EK +R+ + + + ++ ++ + ++ ++N E
Sbjct: 28 AIFESKKAELKEDLRQLSEKEQSLRILQTENARLLDEKSDLLNKKEKEIDEKLKNLAAKE 87
Query: 73 TIYK 76
+K
Sbjct: 88 EAFK 91
>ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacter pylori J99]
Length = 455
Score = 21.6 bits (44), Expect = 4.8
Identities = 18/52 (34%), Positives = 23/52 (43%), Gaps = 7/52 (13%)
Query: 45 DTVKDMVLQNSVIKTRVNALIRNA-----EI--TETIYKDGLCQVSMELKLD 89
D KD++ N + NALI A E+ ET Y G V E +LD
Sbjct: 107 DYAKDLIFDNKPLARHQNALILKAFNAKNEVLKEETYYSVGGGFVYTEKELD 158
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 21.2 bits (43), Expect = 6.2
Identities = 11/26 (42%), Positives = 13/26 (49%), Gaps = 3/26 (11%)
Query: 75 YKDGL---CQVSMELKLDGRIWYRIL 97
YKD C+VS E+ D W R L
Sbjct: 729 YKDKYSSHCEVSFEIATDKADWMRAL 754
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 21.2 bits (43), Expect = 6.2
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 52 LQNSVIKTRVNALIRNA 68
++N ++ T++NALI A
Sbjct: 646 VENDLLNTKINALITQA 662
>ref|NP_223734.1| PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE [Helicobacter pylori
J99]
Length = 209
Score = 20.8 bits (42), Expect = 8.1
Identities = 9/37 (24%), Positives = 20/37 (53%)
Query: 24 AIVDGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTR 60
A++D + G + I+ N + +K V QN+ ++ +
Sbjct: 157 ALIDQLEEGGILVAPIQENNEQVIKRFVKQNNALRVQ 193
>ref|NP_222904.1| S-adenosylmethionine synthetase [Helicobacter pylori J99]
Length = 385
Score = 20.8 bits (42), Expect = 8.1
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 72 ETIYKDGLCQVSMELK 87
ET+ +G C ++ ELK
Sbjct: 44 ETLVSNGFCMITGELK 59
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.134 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,442
Number of Sequences: 1491
Number of extensions: 2743
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 10
length of query: 102
length of database: 494,079
effective HSP length: 65
effective length of query: 37
effective length of database: 397,164
effective search space: 14695068
effective search space used: 14695068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 42 (20.8 bits)