BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644715|ref|NP_206885.1| hypothetical protein
[Helicobacter pylori 26695]
(62 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222800.1| putative [Helicobacter pylori J99] 118 2e-29
ref|NP_222863.1| ENOLASE [Helicobacter pylori J99] 22 2.0
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 21 4.4
ref|NP_223823.1| putative nucleoside transporter [Helicobac... 21 5.8
ref|NP_223686.1| putative [Helicobacter pylori J99] 21 5.8
ref|NP_223572.1| putative [Helicobacter pylori J99] 21 5.8
ref|NP_224119.1| putative ferredoxin-like protein [Helicoba... 20 9.9
ref|NP_224090.1| putative [Helicobacter pylori J99] 20 9.9
ref|NP_223245.1| putative [Helicobacter pylori J99] 20 9.9
ref|NP_223025.1| putative [Helicobacter pylori J99] 20 9.9
>ref|NP_222800.1| putative [Helicobacter pylori J99]
Length = 62
Score = 118 bits (296), Expect = 2e-29
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 1 MQKEQEAQEIAKKAVKIVFFLGLVVVLLMMINLYMLINQINASAQMSHQIKKIEERLNQE 60
MQKEQEAQEIAKKAVKIVFFLGLVVVLLMMINLYMLINQINASAQMSHQIKKIEERLNQE
Sbjct: 1 MQKEQEAQEIAKKAVKIVFFLGLVVVLLMMINLYMLINQINASAQMSHQIKKIEERLNQE 60
Query: 61 QK 62
QK
Sbjct: 61 QK 62
>ref|NP_222863.1| ENOLASE [Helicobacter pylori J99]
Length = 426
Score = 22.3 bits (46), Expect = 2.0
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 27 LLMMINLYMLINQINASAQMSHQIKKIEERLNQ 59
++M + + ASA++ H +KK+ + NQ
Sbjct: 166 MIMPLGFESFKEALRASAEVYHTLKKLLDEKNQ 198
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 21.2 bits (43), Expect = 4.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 8 QEIAKKAVKIVFFLGLVVVLLMMINLY 34
QEI K + K G+VV +L++I L+
Sbjct: 219 QEIIKGSKKKYIIGGIVVAVLIVIILF 245
>ref|NP_223823.1| putative nucleoside transporter [Helicobacter pylori J99]
Length = 418
Score = 20.8 bits (42), Expect = 5.8
Identities = 11/38 (28%), Positives = 19/38 (49%)
Query: 17 IVFFLGLVVVLLMMINLYMLINQINASAQMSHQIKKIE 54
I+FF L+ +L + + ++IN I + Q K E
Sbjct: 106 IIFFASLISLLYYLKIMPLVINLIGGALQKCLGTSKAE 143
>ref|NP_223686.1| putative [Helicobacter pylori J99]
Length = 623
Score = 20.8 bits (42), Expect = 5.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 8 QEIAKKAVKIVFFLGLVVVLL 28
+E+ +K+V+FL +V LL
Sbjct: 359 KEVINLILKVVYFLIFIVALL 379
>ref|NP_223572.1| putative [Helicobacter pylori J99]
Length = 230
Score = 20.8 bits (42), Expect = 5.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 16 KIVFFLGLVVVLLMMINLYM 35
K++F +VVV+ +INL++
Sbjct: 145 KMLFIALIVVVVCSLINLFL 164
>ref|NP_224119.1| putative ferredoxin-like protein [Helicobacter pylori J99]
Length = 458
Score = 20.0 bits (40), Expect = 9.9
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 12 KKAVKIVFFLGLVVVLLMMINLYML 36
+KA+ ++ F +V L+M+ Y +
Sbjct: 132 RKALSVLLFAPVVAGLMMLFFFYFI 156
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 20.0 bits (40), Expect = 9.9
Identities = 7/10 (70%), Positives = 10/10 (100%)
Query: 53 IEERLNQEQK 62
++ERLNQE+K
Sbjct: 827 LKERLNQEEK 836
>ref|NP_223245.1| putative [Helicobacter pylori J99]
Length = 372
Score = 20.0 bits (40), Expect = 9.9
Identities = 7/13 (53%), Positives = 11/13 (83%)
Query: 19 FFLGLVVVLLMMI 31
FF+GL +VL ++I
Sbjct: 13 FFVGLFIVLFLII 25
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 20.0 bits (40), Expect = 9.9
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 3 KEQEAQEIAKK 13
KE+E QE+A+K
Sbjct: 320 KEEETQEVAEK 330
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.133 0.328
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,144
Number of Sequences: 1491
Number of extensions: 1433
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 62
length of database: 494,079
effective HSP length: 38
effective length of query: 24
effective length of database: 437,421
effective search space: 10498104
effective search space used: 10498104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 40 (20.0 bits)