BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645462|ref|NP_207636.1| thiamin phosphate
pyrophosphorylase/hyroxyethylthiazole kinase (thiB) [Helicobacter
pylori 26695]
(219 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223499.1| THIAMINE PHOSPHATE PYROPHOSPHORYLASE [Heli... 359 e-101
ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 25 1.6
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 25 1.6
ref|NP_223644.1| putative [Helicobacter pylori J99] 24 3.6
ref|NP_223703.1| putative [Helicobacter pylori J99] 23 4.7
ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99] 23 4.7
ref|NP_223491.1| putative [Helicobacter pylori J99] 23 6.2
ref|NP_223309.1| UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERA... 23 6.2
ref|NP_222819.1| putative CYSTATHIONINE GAMMA-SYNTHASE [Hel... 23 6.2
ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter ... 23 8.1
>ref|NP_223499.1| THIAMINE PHOSPHATE PYROPHOSPHORYLASE [Helicobacter pylori J99]
Length = 217
Score = 359 bits (921), Expect = e-101
Identities = 185/220 (84%), Positives = 202/220 (91%), Gaps = 4/220 (1%)
Query: 1 MFDADCLKLMFVAGSQDFYHIKGGKNDRINALLDTLELALQSKITAFQFRQKGDLALQDP 60
MFDA+CLKLMFVAGSQDFYHIKG DR NALLDTLELALQSKITAFQFRQKGDLALQDP
Sbjct: 1 MFDANCLKLMFVAGSQDFYHIKG---DRTNALLDTLELALQSKITAFQFRQKGDLALQDP 57
Query: 61 TQIKQLAMKCQKLCQKYGAPFIVNDEVQLALELKADGVHVGQEDMAIEEVITLCKKRQFI 120
+IK+LA++CQKLC+KYG PFI+NDEV+LALELKADGVHVGQEDMAIEEV+TLC+KR FI
Sbjct: 58 VEIKRLALECQKLCKKYGTPFIINDEVRLALELKADGVHVGQEDMAIEEVVTLCQKRLFI 117
Query: 121 GLSVNTLEQALKARHLDAVAYLGVGPIFPTPSKKD-KQVVGVELLKKIKDSGIKKPLIAI 179
GLSVNTLEQALKARHLD +AYLGVGPIFPTPSKKD K+VVGV LLKKI DSG++KPLIAI
Sbjct: 118 GLSVNTLEQALKARHLDHIAYLGVGPIFPTPSKKDAKEVVGVNLLKKIHDSGVEKPLIAI 177
Query: 180 GGITMHNAPKLREYGGIAVISAIAQAKDKALAVGKLLNNA 219
GGIT NA KL+++ GIAVISAI QAKDKALAV KLL NA
Sbjct: 178 GGITTDNASKLQKFSGIAVISAITQAKDKALAVEKLLKNA 217
>ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 733
Score = 25.0 bits (53), Expect = 1.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 59 DPTQIKQLAMKCQKLCQKYGAPFIVNDEVQLALE 92
DP+ + +A +L +KY FI DEV+ LE
Sbjct: 518 DPSTV--IATHTSELVKKYAEDFITKDEVKSLLE 549
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 25.0 bits (53), Expect = 1.6
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 59 DPTQIKQLAMKCQKLCQK-YGAPFI--VNDEVQLALELKADGVHVGQEDMAIEEVIT 112
D T+I L ++ +++ + +G PF + DE+ A E+ + H+ + D+A+ T
Sbjct: 71 DATEIDVLKIRSKQIRELIFGTPFPSDLRDEIFQAYEILSQQYHMKEADVAVRSSAT 127
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 23.9 bits (50), Expect = 3.6
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 47 FQFRQKGDLALQDPTQIKQLAMKCQKLCQKYGAPFIVNDEVQLALELKADGV 98
F KGD+A +P + A K Q+ P++V ++ A + D +
Sbjct: 47 FSILDKGDVATNNPVEESDKANKIQE-----PLPYVVKTQINKASMISRDPI 93
>ref|NP_223703.1| putative [Helicobacter pylori J99]
Length = 222
Score = 23.5 bits (49), Expect = 4.7
Identities = 15/58 (25%), Positives = 25/58 (42%)
Query: 65 QLAMKCQKLCQKYGAPFIVNDEVQLALELKADGVHVGQEDMAIEEVITLCKKRQFIGL 122
+LA+K +K C+ G +V A E GV + ++ CK+ + GL
Sbjct: 104 KLALKIEKRCEILGVNLNALLQVNSAYEESKSGVVPEEALETYSQISETCKRLKLKGL 161
>ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99]
Length = 486
Score = 23.5 bits (49), Expect = 4.7
Identities = 21/79 (26%), Positives = 32/79 (39%), Gaps = 1/79 (1%)
Query: 3 DADCLKLMFVAGSQDFYHIKGGKNDRINALLDTLELALQSKITAFQ-FRQKGDLALQDPT 61
D DCLK + ++ Y I +NA L T E L S +++ F + LAL +
Sbjct: 372 DEDCLKTIQEVYAEHQYLIDPHTATALNASLKTHEKTLVSATASYEKFPKTTLLALNEQK 431
Query: 62 QIKQLAMKCQKLCQKYGAP 80
+ + L Y P
Sbjct: 432 KNDDDKAALETLKNSYNTP 450
>ref|NP_223491.1| putative [Helicobacter pylori J99]
Length = 462
Score = 23.1 bits (48), Expect = 6.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 108 EEVITLCKKRQFIGLSVNTLEQALKARHLDAVAY 141
E + TL +K +F+ + LKARH+D + +
Sbjct: 329 EIMATLKRKFRFLEYAPVITTSCLKARHIDEIKH 362
>ref|NP_223309.1| UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE [Helicobacter pylori
J99]
Length = 273
Score = 23.1 bits (48), Expect = 6.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 22 KGGKNDRINALLDTLELALQSKITAFQFRQK 52
K GKN+ I L A + +I A+QF+ K
Sbjct: 221 KPGKNNEIQITDALLTQAKRKRIIAYQFKGK 251
>ref|NP_222819.1| putative CYSTATHIONINE GAMMA-SYNTHASE [Helicobacter pylori J99]
Length = 380
Score = 23.1 bits (48), Expect = 6.2
Identities = 14/37 (37%), Positives = 18/37 (47%)
Query: 23 GGKNDRINALLDTLELALQSKITAFQFRQKGDLALQD 59
GG +D + L+ T AL + FQ G L LQD
Sbjct: 198 GGHSDVVAGLVTTNNEALAQEFDFFQNAIGGVLGLQD 234
>ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter pylori J99]
Length = 941
Score = 22.7 bits (47), Expect = 8.1
Identities = 17/55 (30%), Positives = 24/55 (42%), Gaps = 7/55 (12%)
Query: 108 EEVITLCKKRQFI-GLSVNTLEQALKARHLDAVAYLGVGPIFPTPSKKDKQVVGV 161
+ ++ KK Q + G+ + LE +LD V YL PI TP GV
Sbjct: 656 QTLLNHAKKNQSLNGVEIVGLE------YLDKVIYLDQAPIGKTPRSNPATYTGV 704
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.138 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,651
Number of Sequences: 1491
Number of extensions: 8819
Number of successful extensions: 33
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 10
length of query: 219
length of database: 494,079
effective HSP length: 74
effective length of query: 145
effective length of database: 383,745
effective search space: 55643025
effective search space used: 55643025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)