BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645466|ref|NP_207640.1| hypothetical protein
[Helicobacter pylori 26695]
         (33 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223479.1|  HOMOSERINE DEHYDROGENASE [Helicobacter pyl...    23  1.3

>ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pylori J99]
          Length = 421

 Score = 23.1 bits (48), Expect = 1.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 6   IAESNESTVVAEFHSSNEKKALMRAKQ 32
           I +SN++ ++   H++NEK  L   K+
Sbjct: 377 IPQSNKAKILFSTHTTNEKSMLNALKE 403



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.298    0.108    0.255 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,858
Number of Sequences: 1491
Number of extensions: 360
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 33
length of database: 494,079
effective HSP length: 9
effective length of query: 24
effective length of database: 480,660
effective search space: 11535840
effective search space used: 11535840
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.8 bits)
S2: 41 (20.4 bits)