BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645468|ref|NP_207642.1| hypothetical protein
[Helicobacter pylori 26695]
(96 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 46 1e-07
ref|NP_223503.1| TYPE I RESTRICTIONENZYME (SPECIFICITY SUBU... 44 7e-07
ref|NP_222754.1| putative [Helicobacter pylori J99] 25 0.27
ref|NP_223433.1| putative [Helicobacter pylori J99] 23 0.79
ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylor... 23 0.79
ref|NP_222872.1| putative histidine kinase sensor protein [... 23 1.4
ref|NP_223384.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_223369.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223352.1| putative Outer membrane protein [Helicobac... 22 3.0
ref|NP_222916.1| putative Outer membrane protein [Helicobac... 22 3.0
ref|NP_224033.1| FLAGELLUM-SPECIFIC ATP SYNTHASE [Helicobac... 21 3.9
ref|NP_223207.1| cag island protein [Helicobacter pylori J99] 21 3.9
ref|NP_223073.1| PHOSPHATIDYLSERINE SYNTHASE [Helicobacter ... 21 3.9
ref|NP_223004.1| PERIPLASMIC DIPEPTIDE TRANSPORT SUBSTRATE-... 21 3.9
ref|NP_223258.1| putative [Helicobacter pylori J99] 21 5.1
ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 21 5.1
ref|NP_223821.1| PURINE NUCLEOSIDE PHOSPHORYLASE [Helicobac... 20 6.7
ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99] 20 6.7
ref|NP_223356.1| ACETYL-COA ACETYLTRANSFERASE [Helicobacter... 20 6.7
ref|NP_223381.1| putative Outer membrane protein [Helicobac... 20 8.8
ref|NP_222996.1| DIAMINOPIMELATE DECARBOXYLASE [Helicobacte... 20 8.8
ref|NP_222904.1| S-adenosylmethionine synthetase [Helicobac... 20 8.8
>ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 454
Score = 45.8 bits (107), Expect = 1e-07
Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 23/108 (21%)
Query: 1 MHKIEQLLQTLAPKGVEFRKLGDI--------ILSLKTGLNPRKFFKLNTPNANNYYVTV 52
M+KIE LL TLAPKGVEFRKLGDI S K+ KF+ NN + +
Sbjct: 1 MNKIELLLHTLAPKGVEFRKLGDIGEFYGGLVGKSKKSFSQGNKFYVPYINVFNNPQLDL 60
Query: 53 RELEEYTI--------------KFTHQTDRIDDNALSLCLKRSNLEKD 86
LE I FT ++ ++D A+S C+ +E+D
Sbjct: 61 NALESVQIGDKEKQNTIQLGDVLFTGSSENLEDCAMS-CVVTQKIEED 107
Score = 40.8 bits (94), Expect = 5e-06
Identities = 18/22 (81%), Positives = 21/22 (94%)
Query: 3 KIEQLLQTLAPKGVEFRKLGDI 24
+++QLL TLAPKGVEFRKLGDI
Sbjct: 237 RLKQLLHTLAPKGVEFRKLGDI 258
>ref|NP_223503.1| TYPE I RESTRICTIONENZYME (SPECIFICITY SUBUNIT) [Helicobacter
pylori J99]
Length = 207
Score = 43.5 bits (101), Expect = 7e-07
Identities = 29/72 (40%), Positives = 39/72 (53%), Gaps = 5/72 (6%)
Query: 1 MHKIEQLLQTLAPKGVEFRKLGDIILSLKTGLNPRKFFKLNTPNANNYYVTV---RELEE 57
M+KIE+LLQTLAPKGV FRKLG++ S T K +++ Y + REL
Sbjct: 1 MNKIERLLQTLAPKGVGFRKLGEVCES--TNKKTLKISEVSEVKNKGMYPVINSGRELYG 58
Query: 58 YTIKFTHQTDRI 69
Y F + + I
Sbjct: 59 YYHDFNNDGENI 70
>ref|NP_222754.1| putative [Helicobacter pylori J99]
Length = 335
Score = 25.0 bits (53), Expect = 0.27
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 12/53 (22%)
Query: 13 PKGVEFRKLGDIILSL---KTGLNPRKFFK-LNTPNAN--------NYYVTVR 53
PKG++F KLGD IL + NP+ + L+TP +Y+ VR
Sbjct: 283 PKGLDFLKLGDRILWVNHKSVSFNPKALREALSTPKIELLVWRQGFEFYIKVR 335
>ref|NP_223433.1| putative [Helicobacter pylori J99]
Length = 227
Score = 23.5 bits (49), Expect = 0.79
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 48 YYVTVRELEEYTIKFTHQTDRIDDNALSLCLKRSNLEKDDIFYSLE 93
YY + ++ F HQ +I L ++NL++ DI L+
Sbjct: 150 YYQNKDFYKRLSLAFKHQKTKIPHYILKEAALKTNLKRQDILNYLQ 195
>ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 576
Score = 23.5 bits (49), Expect = 0.79
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 77 CLKRSNLEKDDIFYSLELEQ 96
C+KR+NLEK I +ELE+
Sbjct: 549 CIKRANLEKQTI-KDIELEE 567
>ref|NP_222872.1| putative histidine kinase sensor protein [Helicobacter pylori
J99]
Length = 442
Score = 22.7 bits (47), Expect = 1.4
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 47 NYYVTVRELEEYTIKFTHQTDRIDDNALSLCLKRSNLEKDDIFYS 91
N Y R +E+Y K + I++ L +R L +I+Y+
Sbjct: 55 NNYSDYRAIEDYLYKIGFRETTIENLEKVLAKRRHQLHHRNIWYA 99
>ref|NP_223384.1| putative [Helicobacter pylori J99]
Length = 355
Score = 21.9 bits (45), Expect = 2.3
Identities = 10/39 (25%), Positives = 18/39 (45%)
Query: 58 YTIKFTHQTDRIDDNALSLCLKRSNLEKDDIFYSLELEQ 96
+ K + ID++ + K NLE +D F +L +
Sbjct: 72 FAAKVIKVSKEIDESLIPSYYKEKNLEVEDFFIISDLRE 110
>ref|NP_223369.1| putative [Helicobacter pylori J99]
Length = 234
Score = 21.6 bits (44), Expect = 3.0
Identities = 11/32 (34%), Positives = 17/32 (52%), Gaps = 4/32 (12%)
Query: 49 YVTVRELEEY----TIKFTHQTDRIDDNALSL 76
Y + E +Y TI+ H + I++N LSL
Sbjct: 3 YKELLEFNDYAMDLTIRMAHHSTAIENNPLSL 34
>ref|NP_223352.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 336
Score = 21.6 bits (44), Expect = 3.0
Identities = 11/37 (29%), Positives = 18/37 (47%)
Query: 23 DIILSLKTGLNPRKFFKLNTPNANNYYVTVRELEEYT 59
++I + T L P K + +N N+ Y+ E YT
Sbjct: 19 EVIPTPSTPLTPSKRYSINLMTENDGYINPYIDEYYT 55
>ref|NP_222916.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 438
Score = 21.6 bits (44), Expect = 3.0
Identities = 9/17 (52%), Positives = 12/17 (69%)
Query: 6 QLLQTLAPKGVEFRKLG 22
Q+ +L PKG+E KLG
Sbjct: 50 QVDSSLLPKGIENHKLG 66
>ref|NP_224033.1| FLAGELLUM-SPECIFIC ATP SYNTHASE [Helicobacter pylori J99]
Length = 434
Score = 21.2 bits (43), Expect = 3.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 16 VEFRKLGDIILSLKTGLN 33
+E + GD +L LK GLN
Sbjct: 74 IEGARAGDKVLFLKEGLN 91
>ref|NP_223207.1| cag island protein [Helicobacter pylori J99]
Length = 370
Score = 21.2 bits (43), Expect = 3.9
Identities = 10/29 (34%), Positives = 14/29 (47%)
Query: 55 LEEYTIKFTHQTDRIDDNALSLCLKRSNL 83
L EY I+F + NA + L +S L
Sbjct: 281 LREYYIEFVKNNTNLLQNASQMILNQSGL 309
>ref|NP_223073.1| PHOSPHATIDYLSERINE SYNTHASE [Helicobacter pylori J99]
Length = 237
Score = 21.2 bits (43), Expect = 3.9
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 3 KIEQLLQTLAPKGVEFRKLGDII 25
++ +L T + G+EF L D++
Sbjct: 52 RVARLTNTTSKFGIEFDSLADVV 74
>ref|NP_223004.1| PERIPLASMIC DIPEPTIDE TRANSPORT SUBSTRATE-BINDING PROTEIN
[Helicobacter pylori J99]
Length = 546
Score = 21.2 bits (43), Expect = 3.9
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 14/61 (22%)
Query: 14 KGVEFRKLGDIILSLKTGLNPRKFFKLNTPNANNYYV-----------TVRELEEYTIKF 62
K VEF D++ S + ++ K + +P A +Y ++ L++YTI+F
Sbjct: 123 KKVEF-SAKDVLFSFERQMDKAK--RYYSPGAKSYKYWEGMGMSHIIKSIEALDDYTIRF 179
Query: 63 T 63
T
Sbjct: 180 T 180
>ref|NP_223258.1| putative [Helicobacter pylori J99]
Length = 591
Score = 20.8 bits (42), Expect = 5.1
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 57 EYTIKFTHQTDRIDDNALSLCLKRSNLEKDDIFYSLELE 95
+Y IK HQ + + KR ++ D+I++ + E
Sbjct: 44 KYNIKGFHQARILAEMQSRKLSKRQDITLDEIYHQIPKE 82
>ref|NP_223075.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 632
Score = 20.8 bits (42), Expect = 5.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 38 FKLNTPNANNYYVTVREL 55
+ LNTP N Y + EL
Sbjct: 466 YTLNTPEENKYLMQKHEL 483
>ref|NP_223821.1| PURINE NUCLEOSIDE PHOSPHORYLASE [Helicobacter pylori J99]
Length = 233
Score = 20.4 bits (41), Expect = 6.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 74 LSLCLKRSNLEKDDIFYSLE 93
L + LK N+ D FYS E
Sbjct: 144 LGIDLKIGNVFSSDFFYSFE 163
>ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99]
Length = 852
Score = 20.4 bits (41), Expect = 6.7
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 5 EQLLQTLAPKGVEFRKLGDII 25
EQ ++ + KGV +GD++
Sbjct: 213 EQRIEAIKTKGVPVAYVGDVV 233
>ref|NP_223356.1| ACETYL-COA ACETYLTRANSFERASE [Helicobacter pylori J99]
Length = 391
Score = 20.4 bits (41), Expect = 6.7
Identities = 10/30 (33%), Positives = 15/30 (49%)
Query: 27 SLKTGLNPRKFFKLNTPNANNYYVTVRELE 56
++K LN F+LN A ++ELE
Sbjct: 301 NIKMNLNDINLFELNEAFAAQSIAVLKELE 330
>ref|NP_223381.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 305
Score = 20.0 bits (40), Expect = 8.8
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 23 DIILSLKTGLNPRKFFKLNTPNANNYYVTVRELEEYTIKFTHQTDR 68
D +L L FFK+ + +Y + THQ D+
Sbjct: 186 DTLLKLALKTEKMLFFKIGVFGGGGVEYAILWSPQYKNQNTHQDDK 231
>ref|NP_222996.1| DIAMINOPIMELATE DECARBOXYLASE [Helicobacter pylori J99]
Length = 405
Score = 20.0 bits (40), Expect = 8.8
Identities = 8/22 (36%), Positives = 13/22 (58%)
Query: 15 GVEFRKLGDIILSLKTGLNPRK 36
G + +G+I +LK G+ P K
Sbjct: 63 GADCVSIGEIQRALKAGIKPYK 84
>ref|NP_222904.1| S-adenosylmethionine synthetase [Helicobacter pylori J99]
Length = 385
Score = 20.0 bits (40), Expect = 8.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 53 RELEEYTIKFTHQTDRI 69
RELEE+T + T++ + I
Sbjct: 363 RELEEFTWEKTNKVEEI 379
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.138 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,396
Number of Sequences: 1491
Number of extensions: 4194
Number of successful extensions: 23
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of query: 96
length of database: 494,079
effective HSP length: 72
effective length of query: 24
effective length of database: 386,727
effective search space: 9281448
effective search space used: 9281448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 40 (20.0 bits)