BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645469|ref|NP_207643.1| type I restriction enzyme M
protein (hsdM) [Helicobacter pylori 26695]
(527 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 923 0.0
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 253 6e-69
ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 170 9e-44
ref|NP_223645.1| putative [Helicobacter pylori J99] 37 0.001
ref|NP_223564.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 37 0.002
ref|NP_222897.1| putative cardiolipin synthase [Helicobacte... 30 0.12
ref|NP_224110.1| putative [Helicobacter pylori J99] 29 0.34
ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 29 0.34
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 28 0.75
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 27 1.3
ref|NP_223721.1| putative [Helicobacter pylori J99] 27 1.3
ref|NP_224022.1| putative [Helicobacter pylori J99] 27 1.7
ref|NP_223082.1| S-ADENOSYLMETHIONINE TRNA RIBOSYLTRANSFERA... 26 2.2
ref|NP_223981.1| MAGNESIUM AND COBALT TRANSPORT PROTEIN [He... 26 2.8
ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori ... 26 2.8
ref|NP_224211.1| putative [Helicobacter pylori J99] 25 3.7
ref|NP_223874.1| putative [Helicobacter pylori J99] 25 3.7
ref|NP_223639.1| putative [Helicobacter pylori J99] 25 3.7
ref|NP_223965.1| putative [Helicobacter pylori J99] 25 4.9
ref|NP_223546.1| putative [Helicobacter pylori J99] 25 4.9
ref|NP_222765.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 4.9
ref|NP_223393.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter ... 25 6.3
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 25 6.3
ref|NP_223860.1| putative [Helicobacter pylori J99] 24 8.3
ref|NP_223154.1| putative [Helicobacter pylori J99] 24 8.3
ref|NP_223047.1| 1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE [Heli... 24 8.3
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 24 8.3
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 24 8.3
>ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 528
Score = 923 bits (2385), Expect = 0.0
Identities = 459/516 (88%), Positives = 483/516 (92%)
Query: 7 NNQASLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYINKEERKRD 66
NN ASL RNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENM ++ N+ ERK D
Sbjct: 12 NNHASLARNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMANHHNEYERKID 71
Query: 67 PSFDYAKLSDEKAERGRKHLIEQKGFFIPPSALFCNALKNACHNEDLNVTLQNIFNEIEK 126
P+FDYA LSDE+AE RK IE+KGFFIPPSALFCN LKNA +NEDLNVTLQNIFNEIEK
Sbjct: 72 PNFDYASLSDEEAEIVRKSTIEEKGFFIPPSALFCNVLKNAPNNEDLNVTLQNIFNEIEK 131
Query: 127 SSLGTPSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILEAIGGMQLGDYLKSGIDVFG 186
SSLGTPSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKIL+AIGGMQLGDY +SGIDVFG
Sbjct: 132 SSLGTPSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILQAIGGMQLGDYQQSGIDVFG 191
Query: 187 DAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKITLHGQESVNKVYDPCCGSGSLLLQFS 246
DAYEYLMAMYASNAGKSGGE+FTPQEVSELLAKITLH QE++NKVYDPCCGSGSLLLQFS
Sbjct: 192 DAYEYLMAMYASNAGKSGGEYFTPQEVSELLAKITLHNQENINKVYDPCCGSGSLLLQFS 251
Query: 247 KVLGDKNVSKGYFGQEINLTTYNLCRINMFLHDINYSKFHIAHGDTLLDPKHEDDEPFDA 306
KVLGDKNV KGYFGQEINLTTYNLCRINMFLHDINYSKFHIA GDTLLDPKHEDDEPFDA
Sbjct: 252 KVLGDKNVLKGYFGQEINLTTYNLCRINMFLHDINYSKFHIALGDTLLDPKHEDDEPFDA 311
Query: 307 IVSNPPYSTKWVGDSNPILINDERFSPAGVLAPKNAADLAFTMHMLSYLSNSGTAAIVEF 366
IVSNPPYSTKW+GD+NP+L+NDERF+ AG LAPKNAADLAFTMHMLSYLSN G AAIVEF
Sbjct: 312 IVSNPPYSTKWIGDNNPLLMNDERFNKAGALAPKNAADLAFTMHMLSYLSNQGAAAIVEF 371
Query: 367 PGVLYRGNAEAKIREYLVKENVIDCVIALPDNLFFGTSIATCILVLKKNKQDDTTLFIDA 426
PGVLYR AE KIREYLVKEN IDCVIALP+NLFFGT+IATCILVLKKNK+DDTTLFIDA
Sbjct: 372 PGVLYRSGAEKKIREYLVKENFIDCVIALPENLFFGTNIATCILVLKKNKKDDTTLFIDA 431
Query: 427 SKEFVKEGKKNKLKERNREKILQTYIERKEIKHFCALANIEKIKENDYNLSVNRYVEQED 486
SKEF+KEGKKNKLK NREKILQTYIERK IKHF ALANIEKI+ENDYNLSVNRYVEQED
Sbjct: 432 SKEFLKEGKKNKLKAHNREKILQTYIERKAIKHFSALANIEKIQENDYNLSVNRYVEQED 491
Query: 487 TKEAIDIKALNSEIAQIVEKQSALRNRLESIIKELE 522
TKE IDIKALN EI+QIV+KQS LRN LESIIKELE
Sbjct: 492 TKEIIDIKALNGEISQIVKKQSVLRNSLESIIKELE 527
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 253 bits (647), Expect = 6e-69
Identities = 168/527 (31%), Positives = 280/527 (52%), Gaps = 57/527 (10%)
Query: 11 SLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYINKEERKRDPSFD 70
+++++EL++++W A+ LRG +D ++K YVL +LF +YIS+ + ++ E F
Sbjct: 2 AIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISDKAKNNMDSEIEVPQGCF- 60
Query: 71 YAKLSDEKAERGRKHLIEQKGFFIPPSALFCNALKNACHNEDLNVTLQNIFNEIEKSSLG 130
D A G K + + LN + I
Sbjct: 61 ---YEDILALEGDKEI-----------------------GDKLNKIIAKI---------- 84
Query: 131 TPSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILEAIGGMQLGDYLKSGIDVFGDAYE 190
++KG+ +D N N + ++ L+ +++ + LG + D+ GDAYE
Sbjct: 85 -AERNDLKGVIDSVDFNDNTKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYE 143
Query: 191 YLMAMYASNAGKSGGEFFTPQEVSELLAKITLHGQESVNK---VYDPCCGSGSLLLQFSK 247
YLM +AS +GKS G+F+TP EVS LL + L E+ + +YDP CGSGSLLL+ S
Sbjct: 144 YLMRHFASESGKSKGQFYTPSEVS-LLLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASS 202
Query: 248 VLGDKNVSKGYFGQEINLTTYNLCRINMFLHDINYSKFHIAHGDTLLDPKHEDD----EP 303
+ G K ++ +GQE +++T LC++NM LH+ + TL +P + +
Sbjct: 203 LAGKKGLT--IYGQEKDISTTALCKMNMILHNSATADIAKGGSSTLSNPLFTTENGMLKT 260
Query: 304 FDAIVSNPPYSTK-W-----VGDSNPILINDERFSPAGVLAPKNAADLAFTMHMLSYLSN 357
FD +V+NPP+S K W + + +IND P+ D AF +H++ L+
Sbjct: 261 FDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLNP 320
Query: 358 SGTAAIVEFPGVLYRGNAEAKIREYLVKENVIDCVIALPDNLFFGTSIATCILVL-KKNK 416
+G A++ GVL+RGNAEA+IR+ L+ + I VI L NLF+GTSI C++VL K+N
Sbjct: 321 TGKGAVILPHGVLFRGNAEAQIRKNLLMKGYIKGVIGLAPNLFYGTSIPACVIVLDKENA 380
Query: 417 QDDTTLF-IDASKEFVKEGKKNKLKERNREKILQTYIERKEIKHFCALANIEKIKENDYN 475
+F IDASK+F K+G KN+L+E++ +K++ T+ KEI ++ + ++E+I NDYN
Sbjct: 381 HARKGVFVIDASKDFKKDGNKNRLREQDVQKMIDTFNALKEIPYYSKMVSLEEISLNDYN 440
Query: 476 LSVNRYVEQEDTKEAIDIKALNSEIAQIVEKQSALRNRLESIIKELE 522
L++ RY+ + E D+ AL + + + + + + + KEL+
Sbjct: 441 LNIPRYIAAKQELEK-DLFALINSPSYLPKNEIKAYDPYFQVFKELK 486
>ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 543
Score = 170 bits (430), Expect = 9e-44
Identities = 129/475 (27%), Positives = 224/475 (47%), Gaps = 28/475 (5%)
Query: 70 DYAKLSDEKAERGRKHLIEQKGFFIPPSALFCNALKNACHNEDLNVTLQNIFNEIEKSS- 128
DY ++E+ E L ++K + L + ++ DL++ L IFN I ++
Sbjct: 67 DYKDFNEEEKEYFFLTLSDKKLPKLAYDELLNYLFEKHFYDNDLHLKLDAIFNRISSNNA 126
Query: 129 --LGTPS-EENVKGLFADLDVNSNKLGSSHQNRVEKLTKILEAIGGMQ--LGDYLKSGID 183
T S +E LF + N+ GS N L L+ Q L + G D
Sbjct: 127 ELFNTKSTDETTIALFESVSQYINE-GSKRANFTRSLLDKLKNFNFKQAFLNLQNQQGYD 185
Query: 184 VFGDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKITLHGQESVNKVYDPCCGSGSLLL 243
F +EYL+ Y +N+G + E++TP ++ ++AK+ ++ K+YDP G+G+LL+
Sbjct: 186 FFAPIFEYLLKDYNNNSGGTYAEYYTPLSIASIIAKLLVNKPTQSVKIYDPSAGTGTLLM 245
Query: 244 QFSKVLGDKNVSKGYFGQEINLTTYNLCRINMFLHDINYSKFHIAHGDTLLDPKHEDDE- 302
+ +G + + + Q+I+ + + ++N+ L+D+ +S H G+TL +P H D
Sbjct: 246 ALAHQIGTDSCT--LYAQDISQKSLRMLKLNLILNDLTHSLRHAIEGNTLTNPYHSKDHK 303
Query: 303 -PFDAIVSNPPYSTKWVGDSNPILINDERFSPAGVLAPKNAAD-----LAFTMHMLSYLS 356
D IVSNPP+ + + I N F PKN F H L+ LS
Sbjct: 304 GKMDFIVSNPPFKLDFSNEHAEISQNKNDFFLGVPNIPKNDKSKMPIYTLFFQHCLNMLS 363
Query: 357 NSGTAAIVEFPG-VLYRGNAEAKIREYLVKENVIDCVIALPDNLFFGTSIATCILVLKKN 415
G AI+ G + + E KI +LV E ++ VI +P +F T I+ +K
Sbjct: 364 PKGKGAIIVPTGFISAKSGVENKIVRHLVDERLVYGVICMPSQVFANTGTNVSIIFFQKT 423
Query: 416 KQDDTTLFIDASK---EFVK-EGKKNKLKERNREKILQTYIERKEIKHFCALANIEKIKE 471
+ IDASK E+ + + KK +L+ + + IL+T+ + FCAL + ++I E
Sbjct: 424 PSAKEVILIDASKLGEEYTENKNKKTRLRPSDMDLILETFQNKAPKSDFCALVSFDEITE 483
Query: 472 NDYNLSVNRYVEQEDTKEAID-------IKALNSEIAQIVEKQSALRNRLESIIK 519
+Y+L+ +Y EDT E I ++ +SE+A + ++ L+ + +K
Sbjct: 484 KNYSLNPGQYFTIEDTSETISQAEFENLMQQYSSELASLFDESQNLQQEILETLK 538
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 37.0 bits (84), Expect = 0.001
Identities = 65/314 (20%), Positives = 123/314 (38%), Gaps = 72/314 (22%)
Query: 207 FFTPQEVSEL----LAKITLHGQESVNKVYDPCCGSGSLLLQFSKVLGDKNVSKGYFGQE 262
++TP+ V + L ++ + ++++P G+G + + DKN + G E
Sbjct: 525 YYTPKLVIDSIYQGLDQLGFNNDNHPKEIFEPSLGTGKFI---AHAPSDKNYR--FIGTE 579
Query: 263 INLTTYNLCRINMFLHDINYSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDSN 322
++ + NL + FL+ + +T L+ ++ + +DA V NPPY + SN
Sbjct: 580 LDPISANLSK---FLYPNQVIQ------NTALE-NYQFYQEYDAFVGNPPYGNHKIYSSN 629
Query: 323 PILINDERFSPAGVLAPKNAADLAFTMHMLSYLSNSGTAAIVEFPGVLYRGNAEAKIREY 382
+++E + F + L + G A V + N K+RE+
Sbjct: 630 DKELSNE------------SIHNYFLGKAIKELKDDGIGAFVVSSWFMDAKN--PKMREH 675
Query: 383 LVKENVIDCVIALPDNLF--FGTSIATCILVLKK---------------------NKQDD 419
+ K I LP+++F G + + I+ KK N DD
Sbjct: 676 IAKNATFLGAIRLPNSVFKATGAEVTSDIVFFKKGVEKATNQSFTKAMPYYDKILNSLDD 735
Query: 420 TTLFIDASKEFVKEGKKNKLKERN--------REKILQTYIERKEIKHFCALAN------ 465
TLF + F ++LK N +++ LQ + E+ + +F
Sbjct: 736 DTLFALQNNRFDSFIPSDQLKIVNAVANHFGFKQEKLQRWYEKIDTANFGYSTQDYKIIK 795
Query: 466 --IEKIKENDYNLS 477
I+K+ +N NL+
Sbjct: 796 DFIDKVGKNSINLN 809
>ref|NP_223564.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 381
Score = 36.6 bits (83), Expect = 0.002
Identities = 51/251 (20%), Positives = 91/251 (35%), Gaps = 41/251 (16%)
Query: 202 KSGGEFFTPQEVSELLAKITLHGQESVNKVYDPCCGSGSLLLQFSKVLGDKNVSKGYFGQ 261
K+ G+ FTP+ + + + I H SV +P G GS L + K +G + K
Sbjct: 11 KTLGQVFTPKNIVDFML-ILKHNHGSV---LEPSAGDGSFLKRLKKAVGIEIDPK----- 61
Query: 262 EINLTTYNLCRINMFLHDINYSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPY-STKWVGD 320
+C N D + + F+ I+ NPPY K +
Sbjct: 62 --------ICPKNALCMDFF---------------DYPLENQFNTIIGNPPYVKHKDIAP 98
Query: 321 SNPILINDERFSPAGVLAPKNAADLAFTMHMLSYLSNSGTAAIVEFPGVLYRGNAEAKIR 380
S ++ F L L F + +L G + P + + K+
Sbjct: 99 STKEKLHYSLFDERSNLY------LFFIEKAIKHLKPKGELIFIT-PRDFLKSTSSVKLN 151
Query: 381 EYLVKENVIDCVIALPDNLFFGTSIATCILVLKKNKQDDTTLFIDASKEFVKEGKKNKLK 440
E++ KE I L D F ++ C+ + + K D + + D + K+G L
Sbjct: 152 EWIYKEGTITHFFELGDQKIFPNAMPNCV-IFRFCKGDFSRITNDGLQFVCKKGILYFLN 210
Query: 441 ERNREKILQTY 451
+ +K+ + +
Sbjct: 211 QSYTQKLSEVF 221
>ref|NP_222897.1| putative cardiolipin synthase [Helicobacter pylori J99]
Length = 502
Score = 30.4 bits (67), Expect = 0.12
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 14/156 (8%)
Query: 321 SNPILINDERFSPAGVLAPKNAADLAFTMHMLSYLSNSGTAAIVEFPGVLYRGNAEAKIR 380
SNP + D + G L KN + H + L G A++ G++ ++
Sbjct: 26 SNPPISYDPYTTTIGSLYAKNLKENP--KHSAAILLEDGFDALLHRVGLIRMSQKSIDMQ 83
Query: 381 EYLVKENVIDCVIALPDNLFFGTSIATCILVLKKNKQDDTTLFIDASKEFVKEGKKN-KL 439
Y+ K ++ VIA + IL+ DD L D S + KN ++
Sbjct: 84 TYIYKNDLSSQVIAKELLNAANRGVKVRILL------DDNGLDSDFSDIMLLNFHKNIEV 137
Query: 440 KERNREKILQTYIERKEIKHFCALANIEKIKENDYN 475
K N YI K +++F LA+ E+IK+ +N
Sbjct: 138 KIFN-----PYYIRNKGLRYFEMLADYERIKKRMHN 168
>ref|NP_224110.1| putative [Helicobacter pylori J99]
Length = 306
Score = 28.9 bits (63), Expect = 0.34
Identities = 27/132 (20%), Positives = 49/132 (36%), Gaps = 7/132 (5%)
Query: 186 GDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKITLHGQESVNK---VYDPCCGSGSLL 242
G +E ++ + FF + K +G + NK V+ P
Sbjct: 54 GAEFEIIVGLDFKTTDSKSIRFFLDLNKTYKKLKFYCYGDKENNKTDIVFHPKIYMFDNG 113
Query: 243 LQFSKVLGDKNVSKGYFGQEINLTTYNLCRINMFLHDINYSKFHIAHGDTLLDPKHE--- 299
+ + ++G N++KG + T + ++ +N I + D+L P E
Sbjct: 114 KEKTSIIGSANLTKGGLENNFEVNTIFTEKEPLYYSQLNAIYNSIKYADSLFTPNEEYLE 173
Query: 300 -DDEPFDAIVSN 310
DE F AI+ N
Sbjct: 174 SYDEVFSAIIKN 185
>ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 545
Score = 28.9 bits (63), Expect = 0.34
Identities = 41/170 (24%), Positives = 65/170 (38%), Gaps = 17/170 (10%)
Query: 148 SNKLGSSHQNRVEKLTKILEAIGGMQLGDYLKSGIDVFGDAYEYLMAMYASNAGKSGGEF 207
+NK S N E + K LE + S ++ G YE ++ N G +
Sbjct: 64 ANKSLKSAHNHQELILKYLEMLEN-------SSDLENLGSYYEKELSNTTRNLE---GIY 113
Query: 208 FTPQEVSELLAKITLHGQESVNKVYDPCCGSGSLLLQFSKVLGDKNVSKGYFGQEINLTT 267
+TP + E L + + DP GSG+ ++ K LG K + +G + +
Sbjct: 114 YTPNRIVEQLFTLPKDFDTTQAIFCDPAVGSGNFVMHALK-LGFK--VENIYGYDTDAFA 170
Query: 268 YNLCRINMFLHDINYSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPYSTKW 317
L + +I D L KH FD I +NPP+ K+
Sbjct: 171 VALTK-KRIKERYRLDCPNIMQKD-FLSLKHAPQ--FDCIFTNPPWGKKY 216
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 27.7 bits (60), Expect = 0.75
Identities = 28/101 (27%), Positives = 47/101 (45%), Gaps = 14/101 (13%)
Query: 296 PKHEDDEP----FDAIVSNPPY-STKWVGDSNPILINDERFSPAGVLAPKNAADLAFTMH 350
P+ DDE FD I+ NPPY + + D P+L ++++ + AD+
Sbjct: 803 PEVLDDEGDFLGFDCIIGNPPYIRQEQIKDLKPLL--EKQYQD----FYNSTADIYTYFF 856
Query: 351 MLSY--LSNSGTAAIVEFPGVLYRGNAEAKIREYLVKENVI 389
LS+ L G +A + R AK+RE+L+K+ +
Sbjct: 857 ALSFHLLREKGFSAFIT-SNKYARAKYGAKLREWLLKKTTL 896
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 26.9 bits (58), Expect = 1.3
Identities = 17/54 (31%), Positives = 24/54 (43%)
Query: 126 KSSLGTPSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILEAIGGMQLGDYLK 179
K SL +E + G + LD+N L N+ L I A+GG L +K
Sbjct: 697 KESLSVFAERSNNGYYITLDLNDENLARYGINKNAVLDTIKFALGGATLTTMIK 750
Score = 24.3 bits (51), Expect = 8.3
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 102 NALKNACHNEDLNVTLQNIFNEIEKS-----SLGTPSEENVKGLFA----DLDVNSNKLG 152
NA+KN+ ++ V L+N F +I +S SL E VK A D+ S +L
Sbjct: 205 NAIKNSNNDTGGGVILENGFEKIIRSHGYIQSLNDLEEIVVKKEGAIPLKIKDIASVRLA 264
Query: 153 SSHQNRVEKLTKILEAIGGMQLGDYLKSGIDVFGDAYEYLMAMYASN 199
+ L E +GG+ + Y V E + + ASN
Sbjct: 265 PKPRRGAANLNGDKEVVGGIVMVRYHADTYKVLKAIKEKIATLQASN 311
>ref|NP_223721.1| putative [Helicobacter pylori J99]
Length = 223
Score = 26.9 bits (58), Expect = 1.3
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 440 KERNREKILQTYIERKEIKHFCAL-ANIEKIKENDYNLSVNRYVEQEDTKEAIDIKALNS 498
K+ K L+ YI+ +HF A NI KE+++ V +D + +IK
Sbjct: 97 KDLKNVKELRNYIK----EHFSAYYVNISYSKEHNFK------VGDKDKNDEKEIKMSTE 146
Query: 499 EIAQIVEKQS----ALRNRLESIIKELEG 523
E+AQI QS L ++ I EL G
Sbjct: 147 ELAQIYAVQSTPTIVLSDKTGKTIYELPG 175
>ref|NP_224022.1| putative [Helicobacter pylori J99]
Length = 309
Score = 26.6 bits (57), Expect = 1.7
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 412 LKKNKQDDTTLFIDASKEFVKEGKKNKLKERNREKILQTYIERK 455
LK N + F+ +SKEFV + + + R K LQ+Y+E K
Sbjct: 189 LKNNAKASVKDFM-SSKEFVNKYRYTPKQNTERAKKLQSYLESK 231
>ref|NP_223082.1| S-ADENOSYLMETHIONINE TRNA RIBOSYLTRANSFERASE-ISOMERASE
[Helicobacter pylori J99]
Length = 345
Score = 26.2 bits (56), Expect = 2.2
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 147 NSNKLGSSHQNRV----EKLTKILEAIGGMQLGDYLKSGIDVFGDAYEYLMAMYASNAG 201
N +L + + N+ E + K+LE G M L Y+K D DA+EY +++A + G
Sbjct: 127 NGQRLIAFYDNQTPLNQENILKLLEQYGHMPLPPYIKRA-DESLDAHEY-QSVFAKHIG 183
>ref|NP_223981.1| MAGNESIUM AND COBALT TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 318
Score = 25.8 bits (55), Expect = 2.8
Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 112 DLNVTLQNIFNEIEKSSLGTPSEENVKGLFA-DLDVNSNKL 151
+LN+ L + + +E +++ S +N++ LFA ++V NK+
Sbjct: 217 NLNIILTDFSSLVESTTVNLNSLDNIQNLFASQVNVEQNKI 257
>ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
Length = 773
Score = 25.8 bits (55), Expect = 2.8
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 413 KKNKQDDTTLFIDASKEFVKEGKKNKLKE-----RNREKILQTYIERKEIKHFCALANIE 467
+K + +T + D K+FVK+ K +L ++ ++ +T IE ALA +
Sbjct: 208 EKTQLQETYFYKDGLKQFVKDSAKKELLTPIIAFKSMDEETRTSIE-------VALAYAD 260
Query: 468 KIKENDYNLSVNRYVEQEDTKEAIDIKALNSEIAQIVE 505
EN + N + T EA L+ I Q ++
Sbjct: 261 DYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298
>ref|NP_224211.1| putative [Helicobacter pylori J99]
Length = 209
Score = 25.4 bits (54), Expect = 3.7
Identities = 29/112 (25%), Positives = 50/112 (43%), Gaps = 11/112 (9%)
Query: 70 DYAKLSDEKAERGRKHLIEQ-KGFFIPPSALFCNALKNACHNEDLN--------VTLQNI 120
DYAK AE +++ FF L+ L +AC + D+N + QN+
Sbjct: 17 DYAKYPRRIAEELQRYGGNSFANFFRDEGVLYKEILCDACDHLDINYNERSATSLIEQNM 76
Query: 121 FNEIEKSSLGTPSEENVKGLFADLDV-NSNK-LGSSHQNRVEKLTKILEAIG 170
+++ K SL S +K L L + N +K +G + Q + + + +A G
Sbjct: 77 LSKLLKDSLEKMSGREIKELCDGLGMPNIDKVIGENKQVLIASVLTLFKAGG 128
>ref|NP_223874.1| putative [Helicobacter pylori J99]
Length = 415
Score = 25.4 bits (54), Expect = 3.7
Identities = 15/58 (25%), Positives = 31/58 (52%), Gaps = 2/58 (3%)
Query: 445 EKILQTYIERKEIKHFCALANIEKIKENDYNLSVNRYVEQEDTKEAIDIKALNSEIAQ 502
EK+L + KE+ L I +I+ ND L++ ++ KE ++ +N++I++
Sbjct: 338 EKLLNRHFLAKEVATALQLRGIHQIRTNDKQLALR--LQFYGIKEGGRLRLINTKISK 393
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 25.4 bits (54), Expect = 3.7
Identities = 17/58 (29%), Positives = 29/58 (49%), Gaps = 6/58 (10%)
Query: 3 NNPNNNQASLERNEL-HNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYIN 59
NN N + E+NE+ H TI L+ + + WDF + ++ Y + N+T I+
Sbjct: 169 NNRENISSIKEQNEIAHETI-----RLQSAFEVWDFFEKLVSYEHSIYTNINLTRKIS 221
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 25.0 bits (53), Expect = 4.9
Identities = 13/29 (44%), Positives = 16/29 (54%)
Query: 139 GLFADLDVNSNKLGSSHQNRVEKLTKILE 167
GL +D+N KL S +EK KILE
Sbjct: 100 GLSQKVDLNGKKLTQSKMINLEKQKKILE 128
>ref|NP_223546.1| putative [Helicobacter pylori J99]
Length = 68
Score = 25.0 bits (53), Expect = 4.9
Identities = 18/67 (26%), Positives = 34/67 (49%), Gaps = 8/67 (11%)
Query: 424 IDASKEFVKE-GKKNKLKERNREKILQTYIERKEIKHFCALANIEKIKENDYNLSVNRYV 482
++ F +E GK K + + K+L+ + KEIK + A + D NL+ N+Y+
Sbjct: 5 VEMGANFYRELGKLEKQLAKYQSKVLEIKTQMKEIKKQYSQA------KKDENLA-NKYI 57
Query: 483 EQEDTKE 489
++ K+
Sbjct: 58 PNDELKK 64
>ref|NP_222765.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 230
Score = 25.0 bits (53), Expect = 4.9
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 284 KFHIAHGDTLLDPKHEDDEPFDAIVSNPPYS 314
+ H A+ ++ H+ + DAI+++PPY+
Sbjct: 3 QIHHANAFEIIKDFHQQNLKVDAIITDPPYN 33
>ref|NP_223393.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99]
Length = 347
Score = 24.6 bits (52), Expect = 6.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 481 YVEQEDTKEAIDIKALNSEIAQIVEKQSALRNRLESIIKE 520
YVE+ + +E +D K + ++ ++ L N LE +KE
Sbjct: 231 YVEEPNKQEFLDFKQKYLDFSRTKAPKANLSNALEEQLKE 270
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 24.6 bits (52), Expect = 6.3
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 242 LLQFSKVLGDKNVSKGYFGQEINLTTYNLCRINMFLHDINY-----SKFHIAHGDT 292
L+ FSKVL + + G NL N F ++ NY F++A G T
Sbjct: 2571 LVDFSKVLQNTTIGTLDLGPNATFKANNLIVNNAFNNNSNYRANISGNFNVAKGAT 2626
>ref|NP_223860.1| putative [Helicobacter pylori J99]
Length = 234
Score = 24.3 bits (51), Expect = 8.3
Identities = 18/91 (19%), Positives = 42/91 (45%), Gaps = 1/91 (1%)
Query: 411 VLKKNKQDDTTLFIDASKEFVKEGKKNKLKERNREKILQTYIERKEIKHFCALANIEKIK 470
+LKK +D+ + ++D + F G + R+ IL+ + + K F + +
Sbjct: 75 MLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILRLENDTRYFKDFTQVLALNYGS 134
Query: 471 ENDYNLSVNRYVEQEDTKEAIDIKALNSEIA 501
+N+ + + +E +I++L +EI+
Sbjct: 135 KNELSRAFKSLLE-NPPNHINNIESLENEIS 164
>ref|NP_223154.1| putative [Helicobacter pylori J99]
Length = 184
Score = 24.3 bits (51), Expect = 8.3
Identities = 29/120 (24%), Positives = 48/120 (39%), Gaps = 15/120 (12%)
Query: 379 IREYLVKE---NVIDCVIALPDNL--FFGTSIATCILVLKKNKQ------DDTTLFIDAS 427
+R +LV E + I C+ FFG I K++ + D L + +
Sbjct: 40 VRGFLVAEFFKDFIACLFGAQKETIKFFGGDNFESIESFKRSPKADFLLDDHLLLEVQSG 99
Query: 428 KEFVKEGKKNKLKERNR----EKILQTYIERKEIKHFCALANIEKIKENDYNLSVNRYVE 483
+ + + K++K+ E R +KI + A I KIKEND N + +E
Sbjct: 100 FQGINDIKEHKVLEAQRRLITDKIPTIVVHFDLFNGQVACVEISKIKENDLNWITRQQME 159
>ref|NP_223047.1| 1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 618
Score = 24.3 bits (51), Expect = 8.3
Identities = 24/105 (22%), Positives = 50/105 (46%), Gaps = 7/105 (6%)
Query: 412 LKKNKQDDTTLFIDASKEFVKEGKKNKLKERN---REKILQTYIERKEIKHFCALANIEK 468
LK+ + + + S+ KEG+ + N R ++Q ++ K I+ CAL ++
Sbjct: 473 LKEGVFEPSGFVLGRSELLKKEGEILLIGYGNGVGRAHLVQLALKEKNIE--CALLDLRF 530
Query: 469 IKENDYNLS--VNRYVEQEDTKEAIDIKALNSEIAQIVEKQSALR 511
+K D+NLS + Y + + + + S I + + +Q+ L+
Sbjct: 531 LKPLDHNLSAIIAPYQKLYVFSDNYKLGGVASAILEFLSEQNILK 575
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 24.3 bits (51), Expect = 8.3
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 167 EAIGGMQLGDYLKSGIDVFGDAYEYLMAMYASNAGKS 203
+ I G++L +L S + + GD +MA + G+S
Sbjct: 519 DEIKGVELSGHLTSAVALIGDEPNAMMANWMRQMGQS 555
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 24.3 bits (51), Expect = 8.3
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 406 ATCILVLKKNKQDD---------TTLFIDASKEFVKEGKKNKLKERNREKILQTYIERKE 456
AT +LVL+K +D TL + F + K L ++ EK+++ E K
Sbjct: 776 ATSLLVLEKEVYEDENFKKTLIDATLSLSVGDPFDFKNKIGALADKPNEKVIKAIDELKS 835
Query: 457 IKHF 460
+++
Sbjct: 836 YENY 839
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.135 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 578,410
Number of Sequences: 1491
Number of extensions: 28373
Number of successful extensions: 148
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 34
length of query: 527
length of database: 494,079
effective HSP length: 82
effective length of query: 445
effective length of database: 371,817
effective search space: 165458565
effective search space used: 165458565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (24.3 bits)