BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645471|ref|NP_207645.1| hypothetical protein
[Helicobacter pylori 26695]
(313 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223506.1| putative [Helicobacter pylori J99] 537 e-154
ref|NP_223644.1| putative [Helicobacter pylori J99] 37 9e-04
ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 27 0.52
ref|NP_223532.1| putative [Helicobacter pylori J99] 27 0.89
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 26 1.5
ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicob... 26 1.5
ref|NP_222924.1| putative [Helicobacter pylori J99] 26 1.5
ref|NP_223761.1| putative [Helicobacter pylori J99] 25 2.0
ref|NP_223462.1| HOLO-ACYL CARRIER PROTEIN SYNTHASE [Helico... 25 2.0
ref|NP_223988.1| putative [Helicobacter pylori J99] 25 2.6
ref|NP_223984.1| URACIL-DNA GLYCOSYLASE [Helicobacter pylor... 25 2.6
ref|NP_223436.1| putative [Helicobacter pylori J99] 25 3.4
ref|NP_222783.1| putative [Helicobacter pylori J99] 25 3.4
ref|NP_223945.1| 50S RIBOSOMAL PROTEIN L5 [Helicobacter pyl... 24 4.4
ref|NP_223588.1| putative outer membrane protein [Helicobac... 24 4.4
ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori... 24 4.4
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 24 4.4
ref|NP_224106.1| TRANSALDOLASE [Helicobacter pylori J99] 24 5.8
ref|NP_223831.1| aspartate-semialdehyde dehydrogenase [Heli... 24 5.8
ref|NP_224099.1| putative [Helicobacter pylori J99] 23 7.6
ref|NP_223104.1| putative [Helicobacter pylori J99] 23 7.6
ref|NP_222764.1| putative [Helicobacter pylori J99] 23 7.6
ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrop... 23 7.6
>ref|NP_223506.1| putative [Helicobacter pylori J99]
Length = 313
Score = 537 bits (1384), Expect = e-154
Identities = 273/313 (87%), Positives = 284/313 (90%), Gaps = 6/313 (1%)
Query: 1 MKPQDIEIVQSVLE-ITGPIKPTEVYDKAKELFEKGEITNMFDCGGKTPHQSVSSYIYTA 59
MKPQDIEI+QSVLE I PIK TE+YDKAKELFEKGEI +MFD GG+TPHQSVS+ IYTA
Sbjct: 1 MKPQDIEIIQSVLEAIKEPIKVTEIYDKAKELFEKGEIESMFDYGGETPHQSVSAAIYTA 60
Query: 60 LNKGEELPFKKVQENPTLIALKDAAKELGLDAQKISAPS-----SKIAHERDLHPFLTYM 114
LNKGEELPF KVQE P LIALK AAKE L+ +K S +KI HERDLHPFLTYM
Sbjct: 61 LNKGEELPFLKVQEKPVLIALKGAAKEPVLNIEKPGVSSVKIVHNKIMHERDLHPFLTYM 120
Query: 115 AINNENLKCYTKTIFHEESSKSIKGMDRWLYPDMVGVRFLHAELSNENLIAFSKKFDTLP 174
A NENLKCYTKTIFHEESSKS KGMDRWLYPDMVGVRFLHAELSNENLIAFSKKFDTLP
Sbjct: 121 AYYNENLKCYTKTIFHEESSKSPKGMDRWLYPDMVGVRFLHAELSNENLIAFSKKFDTLP 180
Query: 175 IKLVSFELKKEISVHNCRECYFQAISNSSWANEGYLVGRHIDTHNPQLMDLLKRLHASFG 234
IKLVSFELKKEISVHNCRECYFQAISNSSWANEGYLVGRHIDTHNPQLMDLLKRLHASFG
Sbjct: 181 IKLVSFELKKEISVHNCRECYFQAISNSSWANEGYLVGRHIDTHNPQLMDLLKRLHASFG 240
Query: 235 IGVIDLRTNEDKSAILLNAKYKEKIDYTVASELSAKNEKFSGFLKSVVDYDPNHPQRYKD 294
IGVIDLRT+EDKSAILLNAK+KEKIDYTVA ELSAKNEKFSGFLKSVVDYDPNHP RYKD
Sbjct: 241 IGVIDLRTDEDKSAILLNAKHKEKIDYTVALELSAKNEKFSGFLKSVVDYDPNHPHRYKD 300
Query: 295 EFDEVKKKEELYP 307
EFDE+KKKEELYP
Sbjct: 301 EFDEIKKKEELYP 313
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 36.6 bits (83), Expect = 9e-04
Identities = 68/280 (24%), Positives = 110/280 (39%), Gaps = 59/280 (21%)
Query: 17 GPIKPTE-VYDKAKELFEKGEITNMFDCGGKTPHQSVSSYIYTALNKGEELPFKKVQENP 75
G IK + VY+ KE FE+ IT +D I +++ E K+++
Sbjct: 120 GEIKESSRVYEANKEGFER-RITKRYDL------------IDRNIDRNREFFIKEIEILT 166
Query: 76 TLIALKDAAKELGLDAQKISAPSSKIAHERDLHPFLTYMAINNENLKCYT--KTIFHEES 133
+LK+ KE GL+ Q + H + H + NE +K Y K I+ E
Sbjct: 167 HTNSLKEL-KEQGLEIQ--------LTHHNETHK--KALENGNEIVKEYDHLKDIYQEVE 215
Query: 134 SKSIKGMDRWLYPDMVGVRF--LHAELSNENLIAFSKKFDTLP---IKLVSFELKKEISV 188
G+ R + P + + L+ +L E++ + K +T +K + FEL KE+ +
Sbjct: 216 RTKDGGLVREIIPSISSAEYFKLYNKLPFESINNENTKLNTNDNEEVKKLEFELAKEVHI 275
Query: 189 HNCRECYFQAISNSSW----------------ANEGYLVGRHIDTHNPQLMDLLKRLHAS 232
+ A + SW NE L H+ +N K
Sbjct: 276 LILEQQLLSATNYYSWIDKDDNANFAWKMHRLINENKLKENHLSANNAN-----KIKQFF 330
Query: 233 FGIGVIDLRTNEDKSAILLNAKYKEKIDYTVASELSAKNE 272
F G I T E++SAI +E DY++ S L + E
Sbjct: 331 FNNGSILGWTKEEQSAI------QENRDYSLRSALLSLEE 364
>ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 545
Score = 27.3 bits (59), Expect = 0.52
Identities = 26/114 (22%), Positives = 45/114 (38%), Gaps = 11/114 (9%)
Query: 151 VRFLHAELSNENLIAFSKKFDTLPIKLVSFELKKEISVHNCRECYFQ-----AISNSSWA 205
+R + + +LI F K F L K V LKK + C++Q +S +
Sbjct: 271 MREMALKFQMRSLIDFDKPFKNLMTKAVGLALKKTHNKDQKISCFYQNSEFKRSPSSFFN 330
Query: 206 NEGYLVGRHIDTHNPQLMDLLKRLHASFGIGVIDLRTNEDKSAILLNAKYKEKI 259
N + H +++D L F + I L+ N + ++ KEK+
Sbjct: 331 NPKKIFNIHCSHQKNKILDHL------FSLPHITLKNNAHFALGIVTGNNKEKL 378
>ref|NP_223532.1| putative [Helicobacter pylori J99]
Length = 117
Score = 26.6 bits (57), Expect = 0.89
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 46 KTPHQSVSSYIYTALNKGEELPFKKVQENPTLIALKDAAKELGLD---AQKISAPSSKIA 102
K S S Y + KGE LP + +PT A+K L+ A+K++ P I
Sbjct: 45 KRLEDSESLYTSPPITKGETLPLNSNKPDPTTNAIKTQEPLYPLELANAEKLAKPRKTIQ 104
Query: 103 HER 105
R
Sbjct: 105 KVR 107
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 25.8 bits (55), Expect = 1.5
Identities = 14/39 (35%), Positives = 22/39 (55%), Gaps = 2/39 (5%)
Query: 57 YTALNKGEELPFKKVQENPTLIALKDAAKELGLDAQKIS 95
+ G+ F K +E TL ALK + K+LG++ + IS
Sbjct: 705 FDEFKNGKNKDFSKAEE--TLKALKGSVKDLGINPEWIS 741
>ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicobacter pylori J99]
Length = 745
Score = 25.8 bits (55), Expect = 1.5
Identities = 15/47 (31%), Positives = 21/47 (43%)
Query: 20 KPTEVYDKAKELFEKGEITNMFDCGGKTPHQSVSSYIYTALNKGEEL 66
KP + +K KEL EKG I M G S + + KG ++
Sbjct: 608 KPQDKLNKIKELKEKGRIVMMVGDGLNDAPSLAMSDVAVVMAKGSDV 654
>ref|NP_222924.1| putative [Helicobacter pylori J99]
Length = 385
Score = 25.8 bits (55), Expect = 1.5
Identities = 22/92 (23%), Positives = 39/92 (41%), Gaps = 6/92 (6%)
Query: 62 KGEELPFKKVQENPTLIALKDAAKELGLDAQKISAPSSKIA--HERDLHPFLTYMAINNE 119
KG + + + + KE+ L+A+K+ K H+ FL ++NNE
Sbjct: 26 KGAKDTHENAHDRDAYCGINREIKEM-LEAKKLHFLQEKALFNHDHQESVFLAIASLNNE 84
Query: 120 NLKCYTKTIFHEESSKSIKG---MDRWLYPDM 148
+ Y K+I+ S G DR ++P +
Sbjct: 85 SFIEYNKSIYKNSSLNYNYGGHLEDRVIHPTL 116
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 25.4 bits (54), Expect = 2.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 260 DYTVASELSAKNEKFSGFLKSVVDYDPNHPQRYKDEFDEVKKKEELYPNPSLS 312
D++ ELSAKN KF+ +++ N K +E+K+K + N L+
Sbjct: 32 DFSKNLELSAKNSKFTNNTLKIIEELNN---GVKQASEEIKEKAFDFSNEKLT 81
Score = 24.6 bits (52), Expect = 3.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 46 KTPHQSVSSYIYTALNKGEELPFKKVQENPTLIALK 81
K S S Y + KGE LP + +PT A+K
Sbjct: 922 KRLEDSESLYTSPPITKGETLPLNSNKPDPTTNAIK 957
>ref|NP_223462.1| HOLO-ACYL CARRIER PROTEIN SYNTHASE [Helicobacter pylori J99]
Length = 119
Score = 25.4 bits (54), Expect = 2.0
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 227 KRLHASFG--IGVIDLRTNEDKSAILLNAKYKEKIDYTVASELSAKNEKFSGFLKSVV 282
K L G + +D+R ++ L KEK+DY LSA +GF +VV
Sbjct: 55 KALQVGIGKELSFLDMRISKSPKNAPLITLSKEKMDYFNIQSLSASISHDAGFAIAVV 112
>ref|NP_223988.1| putative [Helicobacter pylori J99]
Length = 290
Score = 25.0 bits (53), Expect = 2.6
Identities = 18/70 (25%), Positives = 29/70 (40%), Gaps = 4/70 (5%)
Query: 241 RTNEDKSAILLNAKYKEKIDYTVASELSA----KNEKFSGFLKSVVDYDPNHPQRYKDEF 296
R + K+ +L N +I + A E K FS K + Y+ + +R E
Sbjct: 38 RPTKPKTKLLQNLLTSHEIKFGDAFECLIEQYLKEHSFSPLSKKIPYYNKDKEKRESLEL 97
Query: 297 DEVKKKEELY 306
D+ KK+ Y
Sbjct: 98 DQFAKKDNTY 107
>ref|NP_223984.1| URACIL-DNA GLYCOSYLASE [Helicobacter pylori J99]
Length = 233
Score = 25.0 bits (53), Expect = 2.6
Identities = 14/37 (37%), Positives = 20/37 (53%), Gaps = 3/37 (8%)
Query: 220 PQLMDLLKRLHASFGIGVI---DLRTNEDKSAILLNA 253
P L ++ K LHA+ G+ V DL + +LLNA
Sbjct: 101 PSLKNIFKELHANLGVPVPCCGDLSAWAKRGMLLLNA 137
>ref|NP_223436.1| putative [Helicobacter pylori J99]
Length = 429
Score = 24.6 bits (52), Expect = 3.4
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 236 GVIDLRTNEDKSAILLNAKYKEKIDYTVASELSAKNEKFSGFLKS 280
G+I R + ++ + K++E I Y A+ S K F K+
Sbjct: 246 GLIGERLRQITESLNVEVKHQENISYKQATSFSKNFRKHDAFFKN 290
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 24.6 bits (52), Expect = 3.4
Identities = 43/223 (19%), Positives = 87/223 (38%), Gaps = 34/223 (15%)
Query: 81 KDAAKELGLDAQ-KISAPSSKIAHERDLHPFLTYMAINN--ENLKCYTKTIFHEESSKSI 137
+D++ LG DA +I P + + T M++ ++ K + I E + +++
Sbjct: 520 EDSSSVLGDDAACEIQKPEGIFNNNGGNRKYHTKMSVPKAPDDFKSFLTKIHAEFNQRNL 579
Query: 138 KGMDRWLYPDMVGVRFLHAELSNENLIAFSKKFDTLPIKLVSFELKKEISVHNCRECYFQ 197
+DR +Y ++ +NE + KK D +E K I E +
Sbjct: 580 APIDRKIYNGETPLKMPDTLKANEMRLHLGKKVD--------YEQKDLIVEFESNESHLL 631
Query: 198 AISNSSWANEGY--LVGRHIDTHNPQLM--DLLKRLHASFG-------------IGVIDL 240
+ A L+ +++ + N +L+ + KRL SF + V+D
Sbjct: 632 VVIQDLNARIALMKLLFQNVKSANKELVFCNKEKRLIRSFDAQKEYGITPVENILSVLDT 691
Query: 241 RTNEDKSAILLNAKYKEKIDYTVASELSAKNEKFSGFLKSVVD 283
N + + ++ N +++ V + EK FL+ +D
Sbjct: 692 AMNPNSALVIDNLNEAKELHDKVGA------EKLKSFLEKAID 728
>ref|NP_223945.1| 50S RIBOSOMAL PROTEIN L5 [Helicobacter pylori J99]
Length = 181
Score = 24.3 bits (51), Expect = 4.4
Identities = 17/89 (19%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 211 VGRHIDTHNPQLMDLLKRLHASFGIG--VIDLRTNED----------KSAILLNAK---- 254
+ + +D NP L+ L+++ S G G D++ ++ + A++ AK
Sbjct: 16 LAQELDIKNPMLLPKLEKIVISVGAGAHAKDMKIMQNIAQTISLVAGQKAVITKAKKSVA 75
Query: 255 -YKEKIDYTVASELSAKNEKFSGFLKSVV 282
+K + V ++++ +N++ FL+ ++
Sbjct: 76 GFKIREGMAVGAKVTLRNKRMYNFLEKLI 104
>ref|NP_223588.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 24.3 bits (51), Expect = 4.4
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 5 DIEIVQSVLEITGPIKPTEVYDKAKELFEKGEITNMF 41
D+ +++++ + + + P E +D KE F+K + +F
Sbjct: 122 DLGVIETIPKHSKIVLPGEAFDSLKEAFDKIDPYTLF 158
>ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 501
Score = 24.3 bits (51), Expect = 4.4
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 138 KGMDRWLYPDMVGVRFLHAELSNENLIAFSKKFDTLPIKLVSFELKKEISVHNCRECYFQ 197
+GMD P+ + F A + E+LI SK+ +K ++ + K ++N E F
Sbjct: 254 EGMDHSHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLLKTLNLDSK---IIYNDMEVDFN 310
Query: 198 AISNSSWANEGYLVG 212
S S+ + +G
Sbjct: 311 QTSVISYLDALETIG 325
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 24.3 bits (51), Expect = 4.4
Identities = 21/86 (24%), Positives = 38/86 (43%), Gaps = 14/86 (16%)
Query: 57 YTALNKGEELPFKKVQENPTLIALKDAAKELGLDAQKISAPSSKIAHERDLHPFLTYMAI 116
+ L GE+ +K ++ NPTL +A+ G +A + SK+A + + A
Sbjct: 715 FAILTGGEDTAYKMLKANPTLAL---SAETGGKNATIV----SKMADRDQAIKNVIHSAF 767
Query: 117 NNENLKC-------YTKTIFHEESSK 135
+N KC K ++ +E+ K
Sbjct: 768 SNSGQKCSATSLLVLEKEVYEDENFK 793
>ref|NP_224106.1| TRANSALDOLASE [Helicobacter pylori J99]
Length = 316
Score = 23.9 bits (50), Expect = 5.8
Identities = 11/32 (34%), Positives = 16/32 (49%)
Query: 166 FSKKFDTLPIKLVSFELKKEISVHNCRECYFQ 197
F +FD LV L+ + + N ECY+Q
Sbjct: 179 FVSRFDKEIDPLVPQNLQAQSGIMNATECYYQ 210
>ref|NP_223831.1| aspartate-semialdehyde dehydrogenase [Helicobacter pylori J99]
Length = 346
Score = 23.9 bits (50), Expect = 5.8
Identities = 15/52 (28%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
Query: 137 IKGMDRWLYPDMVGVRFLHAELSNENLIAFSKKFDTLPIKLVSFELKKEISV 188
IKG++ +P V A + + + AF+K ++ L FE K+EI +
Sbjct: 20 IKGLENSFFPIKKFVPLASARSAGKKIRAFNKDYEILETTHEVFE-KEEIDI 70
>ref|NP_224099.1| putative [Helicobacter pylori J99]
Length = 329
Score = 23.5 bits (49), Expect = 7.6
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 20/89 (22%)
Query: 176 KLVSFELKK---EISVHNCRECYFQAISNSSWANEGYLVGRHIDTHNPQLMDLLKRLHAS 232
K VS E+K+ + ++++ R+ + A S ++ A E Y KR+
Sbjct: 97 KAVSDEVKRGSRDETINSARDVWQAAKSQANLAKETY-----------------KRVQDL 139
Query: 233 FGIGVIDLRTNEDKSAILLNAKYKEKIDY 261
+ GV L+ ++ A + KY E Y
Sbjct: 140 YDNGVASLQKRDEAYAAYESTKYNESAAY 168
>ref|NP_223104.1| putative [Helicobacter pylori J99]
Length = 429
Score = 23.5 bits (49), Expect = 7.6
Identities = 12/43 (27%), Positives = 22/43 (50%)
Query: 124 YTKTIFHEESSKSIKGMDRWLYPDMVGVRFLHAELSNENLIAF 166
Y I H +++ I G WL+ +V V+ + + +LI+F
Sbjct: 337 YDNQIIHVLATRGIIGFLIWLFFLLVIVKIFWSGIKQNSLISF 379
>ref|NP_222764.1| putative [Helicobacter pylori J99]
Length = 330
Score = 23.5 bits (49), Expect = 7.6
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 168 KKFDTLPIKLVSFELKKEISVHNCRECYFQAISNSSWANEGYLVGRHIDTHNPQLMDLLK 227
KK D P KL+ E+ K + N + + N N +V + D ++ +++ L
Sbjct: 242 KKLDGTPYKLIPLEIPKAVYNENQQRLPATYV-NFLLCNNALIVPTYNDPNDTLILETL- 299
Query: 228 RLHASFGIGVIDLRT 242
R H + +D T
Sbjct: 300 RQHTPLEVIGVDCNT 314
>ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrophosphorylase
[Helicobacter pylori J99]
Length = 470
Score = 23.5 bits (49), Expect = 7.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 235 IGVIDLRTNEDKSAILLNAKYKEKIDYTVASELSAKNEK 273
+GV DL + K A+L+ K K K + SE+ N++
Sbjct: 311 LGVEDLAIIDTKDALLVAHKDKAKDLKALVSEIETHNQE 349
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 348,674
Number of Sequences: 1491
Number of extensions: 16150
Number of successful extensions: 79
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 27
length of query: 313
length of database: 494,079
effective HSP length: 78
effective length of query: 235
effective length of database: 377,781
effective search space: 88778535
effective search space used: 88778535
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)