BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645474|ref|NP_207649.1| alginate O-acetylation
protein (algI) [Helicobacter pylori 26695]
(527 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222860.1| putative [Helicobacter pylori J99] 28 0.57
ref|NP_223911.1| NADH oxidoreductase I [Helicobacter pylori... 28 0.75
ref|NP_223666.1| putative [Helicobacter pylori J99] 26 2.2
ref|NP_223558.1| ACETATE KINASE [Helicobacter pylori J99] 26 2.8
ref|NP_223163.1| PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRAN... 25 3.7
ref|NP_223136.1| putative [Helicobacter pylori J99] 25 3.7
ref|NP_223873.1| putative [Helicobacter pylori J99] 25 4.9
ref|NP_223535.1| putative [Helicobacter pylori J99] 25 4.9
ref|NP_222932.1| putative [Helicobacter pylori J99] 25 4.9
ref|NP_222850.1| L-lactate permease [Helicobacter pylori J99] 25 4.9
ref|NP_222922.1| CDP-DIACYLGLYCEROL SYNTHASE [Helicobacter ... 25 6.3
ref|NP_222881.1| putative [Helicobacter pylori J99] 25 6.3
ref|NP_224206.1| putative UNDECAPRENYL-PHOSPHATE-ALPHA-N-AC... 24 8.3
ref|NP_223980.1| putative [Helicobacter pylori J99] 24 8.3
>ref|NP_222860.1| putative [Helicobacter pylori J99]
Length = 255
Score = 28.1 bits (61), Expect = 0.57
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 34 FILQAYAKNPLFPKLWLVLASLFFYAFWNVK------YLPLLVGSIVFNYFVALKIHQTQ 87
F L ++ L PK+ L + F FW V YL S++F ALK +
Sbjct: 83 FSLPISLESLLLPKILLPMVFFIFSLFWFVASVRLGYYLFNAQSSVLFILHTALKTFALK 142
Query: 88 PNAYKRLWLILGLI 101
P + L LGL+
Sbjct: 143 PTKTIGVALFLGLV 156
>ref|NP_223911.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 512
Score = 27.7 bits (60), Expect = 0.75
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 55 LFFYAFWNVKYLPLL 69
+FFYAFW + LP+L
Sbjct: 130 IFFYAFWEISLLPVL 144
>ref|NP_223666.1| putative [Helicobacter pylori J99]
Length = 420
Score = 26.2 bits (56), Expect = 2.2
Identities = 23/93 (24%), Positives = 41/93 (43%), Gaps = 2/93 (2%)
Query: 68 LLVGSIVFNYFVALKIHQTQPNAYKRLWLILGLIANVSLLGFFKYTDFFLTNFNLIWKSH 127
LL+ + F+ K+ Y + L L+ + LLGFF+ T FL ++ + K
Sbjct: 217 LLLVILGLELFLLFKVFCYVFMTYLEKIIYLSLVIFMLLLGFFQQTRGFLVSY--VKKII 274
Query: 128 FETLHLILPLAISFFTLQQIAYLMDTYKQNQIM 160
T ++ L L + F + Y + N+I+
Sbjct: 275 SLTFYMPLLLLLVLFNSFALQYAIKVGGSNEIV 307
>ref|NP_223558.1| ACETATE KINASE [Helicobacter pylori J99]
Length = 403
Score = 25.8 bits (55), Expect = 2.8
Identities = 17/62 (27%), Positives = 31/62 (49%)
Query: 391 RKFHFTMPKILAWLITFNFINLAWVFFRAKNLESALKVLKGMVGLNGVSLCHLSKEASEF 450
+K H +P+I + F+ ++ + A E K G +G S +++KEA++F
Sbjct: 136 QKAHPHIPQIAVFDTAFHASMPSYAYMYALPYELYEKYQIRRYGFHGTSHHYVAKEAAKF 195
Query: 451 LN 452
LN
Sbjct: 196 LN 197
>ref|NP_223163.1| PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE [Helicobacter
pylori J99]
Length = 353
Score = 25.4 bits (54), Expect = 3.7
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 12 FVLLFNTPLFIFAFLPVGFLGYFILQAYAKNPLFPKLWLVLASLFFYAFWNVKYL 66
F +LF L + L + L F+ + KNPLF + ++ FW + +L
Sbjct: 129 FGMLFILSLIVSVLLSLKGLDTFLYAPFLKNPLFE-----MPTMLAVGFWVLVFL 178
>ref|NP_223136.1| putative [Helicobacter pylori J99]
Length = 255
Score = 25.4 bits (54), Expect = 3.7
Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 30 FLGYFILQAYAKNPLFPKLWLVLASLFFYAFWNVKYLPLLVGSIVFNYFVALKIHQTQPN 89
F Y L+ Y KNPL PK Y N Y LLV S + K QTQ
Sbjct: 14 FYFYNTLKEYLKNPLNPK-----TKTEEYDLKNDPY--LLVQSSPLD-----KFKQTQIG 61
Query: 90 AYKRLWLILGLIAN 103
AY RL L + N
Sbjct: 62 AYMRLLKFLDIQKN 75
>ref|NP_223873.1| putative [Helicobacter pylori J99]
Length = 298
Score = 25.0 bits (53), Expect = 4.9
Identities = 18/79 (22%), Positives = 36/79 (44%), Gaps = 7/79 (8%)
Query: 366 GWTFIIWGLLHGIALSVHRAYSHATRKFHFTMPKILAWLITFNFINLAWVFFRAKNLESA 425
G II G+L GI +S+ R+++ ILA+ + + LA +F L +
Sbjct: 148 GLVEIIMGILSGIFVSLAYITLRDLREYYDKQAVILAFAFGMSLLGLAGMFIDIPFLSTG 207
Query: 426 LKVLK-------GMVGLNG 437
+ + + ++G++G
Sbjct: 208 VHIPRKEDILWISLIGISG 226
>ref|NP_223535.1| putative [Helicobacter pylori J99]
Length = 460
Score = 25.0 bits (53), Expect = 4.9
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 20 LFIFAFLPVGFLGYFILQAYAKNPLFPKLWLVLASLFFYAFWNVKYLPLL 69
L++ LP G F L YAK + L SLF ++ +PLL
Sbjct: 339 LYLLGLLPFGLTKLFSLWLYAKLEQKKAAKISLISLFLGLAASLSLMPLL 388
>ref|NP_222932.1| putative [Helicobacter pylori J99]
Length = 277
Score = 25.0 bits (53), Expect = 4.9
Identities = 18/92 (19%), Positives = 35/92 (37%), Gaps = 5/92 (5%)
Query: 218 DKNNQYLNYRNIALGLFIFSIGLFKKVVIADNTAHFADFGFDKATSLSFIQAWMTSLS-- 275
D+ + L G+F +G+ +++ +F + K L SLS
Sbjct: 153 DRTHGVLMLAGFVTGIFSIPLGMGGGILMVPFLGYFLKYDSKKIVPLGLFFVVFASLSGV 212
Query: 276 ---YSFQLYFDFSGYCDMAIGIGLFFNIKLPI 304
Y+ ++ D S + G+G F + + I
Sbjct: 213 ISLYNGKVLDDISVQAGVITGVGAFLGVGIGI 244
>ref|NP_222850.1| L-lactate permease [Helicobacter pylori J99]
Length = 551
Score = 25.0 bits (53), Expect = 4.9
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 26 LPVGFLGYFILQAYAKNPLFPKLWLVLASLFFY 58
+PV +G L + L+P W+++A++F Y
Sbjct: 60 MPVSMVGSSFLYGFLYG-LWPIAWIIIAAIFLY 91
>ref|NP_222922.1| CDP-DIACYLGLYCEROL SYNTHASE [Helicobacter pylori J99]
Length = 266
Score = 24.6 bits (52), Expect = 6.3
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 50 LVLASLFFYAFWNVKYLPLLVGSIVFNYFVALKIHQTQPNAYKRLWLILGLIA 102
+V+A L YA + + +L G +F AL++ Q + + L L+L +A
Sbjct: 19 IVVAGLILYADNLLLFWAVLGGIYAVGFFEALRLFQVKASFSLYLILVLSWVA 71
>ref|NP_222881.1| putative [Helicobacter pylori J99]
Length = 242
Score = 24.6 bits (52), Expect = 6.3
Identities = 13/40 (32%), Positives = 20/40 (49%), Gaps = 3/40 (7%)
Query: 49 WLVLASLFFYAFWNVKYLPLLV---GSIVFNYFVALKIHQ 85
W+ A ++F FW V L L++ SI + V +HQ
Sbjct: 74 WVFKALVYFLIFWIVILLSLVINIFASIFYTPLVVSYLHQ 113
>ref|NP_224206.1| putative UNDECAPRENYL-PHOSPHATE-ALPHA-N-
ACETYLGLUCOSAMINYLTRANSFERASE [Helicobacter pylori J99]
Length = 335
Score = 24.3 bits (51), Expect = 8.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 5 IISILRVFVLLFNTPLFIFAFLPVGFLGYFILQAYA 40
I+ + V ++ +TPL + F P+ L YFI +A
Sbjct: 99 ILQAVGVVCIISSTPLVVSDFSPLFSLPYFIAFLFA 134
>ref|NP_223980.1| putative [Helicobacter pylori J99]
Length = 242
Score = 24.3 bits (51), Expect = 8.3
Identities = 20/94 (21%), Positives = 36/94 (38%)
Query: 70 VGSIVFNYFVALKIHQTQPNAYKRLWLILGLIANVSLLGFFKYTDFFLTNFNLIWKSHFE 129
+ +I+F + K+ + Q N L L L +I + LLG + I F
Sbjct: 32 IDNIIFITVMVYKLPKHQQNKVMILGLGLAMITRIGLLGSLFFISHLQKPLFAIAGMSFS 91
Query: 130 TLHLILPLAISFFTLQQIAYLMDTYKQNQIMQPK 163
++L L +F + + L + + Q K
Sbjct: 92 WRDVVLLLGGAFLAFKALVELKEQIYPKEKRQEK 125
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.333 0.145 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 571,542
Number of Sequences: 1491
Number of extensions: 27800
Number of successful extensions: 122
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 15
length of query: 527
length of database: 494,079
effective HSP length: 82
effective length of query: 445
effective length of database: 371,817
effective search space: 165458565
effective search space used: 165458565
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (24.3 bits)