BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645475|ref|NP_207650.1| hypothetical protein
[Helicobacter pylori 26695]
(364 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 31 0.057
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 30 0.075
ref|NP_223893.1| putative [Helicobacter pylori J99] 29 0.22
ref|NP_223615.1| putative [Helicobacter pylori J99] 27 0.83
ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter ... 27 1.1
ref|NP_223600.1| putative [Helicobacter pylori J99] 26 1.8
ref|NP_223211.1| cag island protein [Helicobacter pylori J99] 26 1.8
ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 25 2.4
ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 25 3.1
ref|NP_223727.1| BIOTIN CARBOXYL CARRIER PROTEIN [Helicobac... 25 3.1
ref|NP_223588.1| putative outer membrane protein [Helicobac... 25 4.1
ref|NP_223523.1| CDP-DIACYLGLYCEROL PYROPHOSPHATASE [Helico... 25 4.1
ref|NP_223367.1| putative Outer membrane protein [Helicobac... 25 4.1
ref|NP_224021.1| putative [Helicobacter pylori J99] 24 7.0
ref|NP_223503.1| TYPE I RESTRICTIONENZYME (SPECIFICITY SUBU... 24 7.0
ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 24 7.0
ref|NP_222863.1| ENOLASE [Helicobacter pylori J99] 24 7.0
ref|NP_223748.1| putative lipopolysaccharide biosynthesis p... 23 9.1
ref|NP_223732.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [He... 23 9.1
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 23 9.1
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 23 9.1
ref|NP_222897.1| putative cardiolipin synthase [Helicobacte... 23 9.1
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 30.8 bits (68), Expect = 0.057
Identities = 23/77 (29%), Positives = 36/77 (45%), Gaps = 7/77 (9%)
Query: 271 NHTILTRNLNTIHNALKTLL----KYPNVEIHDLRTMPLAKEIKRYKDIRHYDPIGSKEV 326
N+T LT+ N ++A+ L K P V H + K++K YKD++ YD
Sbjct: 770 NYTALTKQNNEKNHAIFLQLSDEGKIPIVLDHSACSTHFIKQMKAYKDLKVYD---LSVY 826
Query: 327 LQAIASKKYLLTPNNID 343
++ + S K P N D
Sbjct: 827 IEEVLSPKLKFNPINED 843
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 30.4 bits (67), Expect = 0.075
Identities = 31/132 (23%), Positives = 56/132 (41%), Gaps = 31/132 (23%)
Query: 219 YLSALKNPNQLAIDEENAYKITKQLEDFIQKHSDKHFILWTRTDSLLKYKVYNHTILTRN 278
Y L +++ EE + ++LED +K F+ W+R+DS ++ +
Sbjct: 124 YAKKLNAIDKIKNTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLR-------- 175
Query: 279 LNTIHNALKTLLKYPNVEIHDLRTMPLAKEIKRYKDIRHYDPIGSKEVLQAIASKKYLLT 338
E+ D++ + +EI+ K IR +G +L AI S YL+
Sbjct: 176 -----------------EMGDIKLLSKDEEIELSKQIR----LGEDIILDAICSVPYLI- 213
Query: 339 PNNIDSFKQKLI 350
+ I ++K LI
Sbjct: 214 -DFIYAYKDALI 224
>ref|NP_223893.1| putative [Helicobacter pylori J99]
Length = 245
Score = 28.9 bits (63), Expect = 0.22
Identities = 14/43 (32%), Positives = 25/43 (57%), Gaps = 6/43 (13%)
Query: 72 SISLNFSLKDIHDLLGLKDPIKLTVSGMNIGEILSLLPFAFKH 114
+I +FSL ++H+ LG P++ ++ + SL+ AFKH
Sbjct: 144 AIHTDFSLHEVHEFLGTPSPLR------DLKTLKSLIKNAFKH 180
>ref|NP_223615.1| putative [Helicobacter pylori J99]
Length = 226
Score = 26.9 bits (58), Expect = 0.83
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 325 EVLQAIASKKYLLTPNNIDSFKQKLIQTIENYQIPKEIQ 363
E Q+I + ++L + +DS K+K I + +I KE+Q
Sbjct: 45 EEYQSILANEFLKFASGVDSLKEKEIALLMLQEIQKELQ 83
>ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 26.6 bits (57), Expect = 1.1
Identities = 29/121 (23%), Positives = 53/121 (42%), Gaps = 18/121 (14%)
Query: 238 KITKQLEDFIQKHSDKHFILWTRTDSLLKYKVY---NHTILTRNLNTIHNALKTLLKYPN 294
+I+K + D+I++H HF+ +L ++ N + +NL + + L PN
Sbjct: 217 EISKGVSDYIERHHLAHFLAMNLEVALKAFETLLPCNKQEVLKNLKPLDLIGRCELLSPN 276
Query: 295 VEIHDLRTMP-----LAKEIKR---------YKDIRHYDPIGSKEVLQAIASKKYLLTPN 340
+ I D+ P L +EIKR Y + D E+L+++ K +L +
Sbjct: 277 ILI-DVGHNPHSAKALKEEIKRIFNAPIVLIYNCYQDKDAFLVLEILKSVVKKVLILELH 335
Query: 341 N 341
N
Sbjct: 336 N 336
>ref|NP_223600.1| putative [Helicobacter pylori J99]
Length = 337
Score = 25.8 bits (55), Expect = 1.8
Identities = 44/216 (20%), Positives = 77/216 (35%), Gaps = 52/216 (24%)
Query: 141 YPYFTGGFVYLYNFGVLKNALFYFSTNYLKI--------KEKTFCKLNSWFQLYDFCNSV 192
+ +F+ F++ +N K L++ ++ K+ +KTF K L + +
Sbjct: 51 FAFFSWVFLFKHNLSH-KIRLYHEKKDFDKLLKQILSQDTQKTFLKTKFKSDLAKNLSQI 109
Query: 193 LNRYDFDFMFSHNNPYDYSLDNVKRSYLSALKNPNQLAIDEENAYKITKQLEDFIQKHSD 252
L RYD + L PN +N +K +E+ + D
Sbjct: 110 LARYDLK---------------------ADLNTPNSGCEKVDNLFKHYHNIENNTLEPKD 148
Query: 253 --KHFILWTRTDSLLKYKVYNHTILTRNLNT-IHNALKTLLKYPNVEIHDLRTMPLAKEI 309
KH + Y H ++ L IHN LK + L + E+
Sbjct: 149 HAKHSL------------AYEHAYFSKRLKAFIHNDLKNAFEV-------LTNAQIPLEL 189
Query: 310 KRYKDIRHYDPIGSKEVLQAIASKKYLLTPNNIDSF 345
+RY I KEVL+A+ + + L + +F
Sbjct: 190 RRYAFIEIAQKGSKKEVLKAVNAMQEDLDKECVKAF 225
Score = 23.5 bits (49), Expect = 9.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 12 VSFCLSLLIGVGLFNYLIDPFEY 34
+ F ++G G+F Y IDP Y
Sbjct: 5 IIFTFLFIVGFGVFVYSIDPQAY 27
>ref|NP_223211.1| cag island protein [Helicobacter pylori J99]
Length = 208
Score = 25.8 bits (55), Expect = 1.8
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 309 IKRYKDIRHYDPIGSK 324
+K+ KD++HYDP+ K
Sbjct: 98 LKKIKDLKHYDPVIEK 113
>ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 660
Score = 25.4 bits (54), Expect = 2.4
Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 26/156 (16%)
Query: 216 KRSYLSALKNPNQLAIDEENAYKITKQLEDFIQKHSDKHFILWTRTDSLLKYKVYNHTIL 275
KR + SA+K P I +N Y T ++ D + + ++ K V NH
Sbjct: 364 KRQFGSAIK-PFVYQIAFDNGYSTTSKIPDTARNFENGNYS---------KNSVQNHAWH 413
Query: 276 TRN-------LNTIHNALKTLLKYPNVEIHDLRTMPLAKEIKRYKDIRHYD-------PI 321
N L T+ AL L + + D + K + D+ + +
Sbjct: 414 PSNYTRKFLGLVTLQEALSHSLNLATINLSD--QLGFEKIYQSLSDMGFKNLPKDLSIVL 471
Query: 322 GSKEVLQAIASKKYLLTPNNIDSFKQKLIQTIENYQ 357
GS + A++KY L N K LI++I N Q
Sbjct: 472 GSFAISPIDAAEKYSLFSNYGTMLKPMLIESITNQQ 507
>ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 613
Score = 25.0 bits (53), Expect = 3.1
Identities = 12/29 (41%), Positives = 16/29 (54%), Gaps = 3/29 (10%)
Query: 43 DWHERVG---GTLLSFEGVIKHYPYNNIL 68
D H++V G + GV +HYPY N L
Sbjct: 157 DAHDKVWQKQGLNIEVSGVSRHYPYQNSL 185
>ref|NP_223727.1| BIOTIN CARBOXYL CARRIER PROTEIN [Helicobacter pylori J99]
Length = 161
Score = 25.0 bits (53), Expect = 3.1
Identities = 14/39 (35%), Positives = 21/39 (52%), Gaps = 1/39 (2%)
Query: 99 MNIGEILSLLPFAFKHQPVNTVAMDLAFFEFILNKESKY 137
MN+ EI L+ FK + + + FE +L+KES Y
Sbjct: 1 MNLSEIEELIK-EFKASDLGHLKLKHEHFELVLDKESAY 38
>ref|NP_223588.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 24.6 bits (52), Expect = 4.1
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 167 NYLKIKEKTFCKLNSWFQLYDFCNSVLNRYDFDFMFSHNNPYDYSLDNVKRSYLSALKNP 226
NY + +T LN+ D NS+L+ F+ S + +S N +S+ S +
Sbjct: 454 NYANLGSQTNYNLNASLNTQDLANSMLSTIQKTFVTSSVTNHHFS--NASQSFRSPILGV 511
Query: 227 N 227
N
Sbjct: 512 N 512
Score = 24.6 bits (52), Expect = 4.1
Identities = 28/118 (23%), Positives = 52/118 (43%), Gaps = 12/118 (10%)
Query: 196 YDFDFMFSHNNPYDYSLDNVKRSYLSALKNPNQLAIDE----ENAYKITKQLEDFIQKHS 251
Y ++ + N Y+L+NVK S+ A N L + E + + + D +++
Sbjct: 90 YMYNGQLTIENFLPYNLNNVKLSFTDAQGNTIDLGVIETIPKHSKIVLPGEAFDSLKEAF 149
Query: 252 DKHFILWTRTDSLLKYKVYNHTILTRNLNTIH---NALKT--LLKYPNVEIHDLRTMP 304
DK + T L K++ + +I N + N +KT ++KY N ++ T P
Sbjct: 150 DK---IDPYTLFLPKFEATSTSISDTNTQRVFETLNNIKTNLIMKYSNENPNNFNTCP 204
>ref|NP_223523.1| CDP-DIACYLGLYCEROL PYROPHOSPHATASE [Helicobacter pylori J99]
Length = 244
Score = 24.6 bits (52), Expect = 4.1
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 205 NNPYDYSLDNVKRSYLSALKNPNQLAIDEENAYKITKQLEDFIQKHSDK 253
N P Y L + +++S ++NP L N + ++ Q DF+ K K
Sbjct: 64 NGPLQYLL--MPTTHISGIENPLLLDPSTPNFFYLSWQARDFMSKKYGK 110
>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 657
Score = 24.6 bits (52), Expect = 4.1
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 167 NYLKIKEKTFCKLNSWFQLYDFCNSVLNRYDFDFMFSHNNPYDYSLDNVKRSYLSALKNP 226
NY + +T LN+ D NS+L+ F+ S + +S N +S+ S +
Sbjct: 443 NYANLGSQTNYNLNASLNTQDLANSMLSTIQKTFVTSSVTNHHFS--NASQSFRSPILGV 500
Query: 227 N 227
N
Sbjct: 501 N 501
>ref|NP_224021.1| putative [Helicobacter pylori J99]
Length = 410
Score = 23.9 bits (50), Expect = 7.0
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 267 YKVYNHTILTRNLNTIHNALKTLLKYPNVEIHDLRTMPLAKEIKRYKDIRHYDPIGSKEV 326
Y Y H ++ ++ N I + P + + ++ KE KRY DI+ S+E
Sbjct: 272 YNSYLHYLVLKHFNPISD--------PRLSVFNV------KEFKRYNDIKKKMVKESEEN 317
Query: 327 LQAIASKKYLL 337
Q + K L+
Sbjct: 318 AQIFSCNKILV 328
>ref|NP_223503.1| TYPE I RESTRICTIONENZYME (SPECIFICITY SUBUNIT) [Helicobacter pylori
J99]
Length = 207
Score = 23.9 bits (50), Expect = 7.0
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 138 FFEYPYFTGGFVYLY-----NFGVLKNALFYFSTNYLKIKE 173
+F +F GG Y Y N + K FY TN +I E
Sbjct: 84 YFNEKFFAGGLCYPYKVKDTNELLTKFLYFYLKTNETQIME 124
>ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 543
Score = 23.9 bits (50), Expect = 7.0
Identities = 8/18 (44%), Positives = 13/18 (71%)
Query: 24 LFNYLIDPFEYFRKAKYP 41
L+ +L D FE+F + K+P
Sbjct: 44 LYKFLCDKFEFFFEQKFP 61
>ref|NP_222863.1| ENOLASE [Helicobacter pylori J99]
Length = 426
Score = 23.9 bits (50), Expect = 7.0
Identities = 11/41 (26%), Positives = 21/41 (50%)
Query: 322 GSKEVLQAIASKKYLLTPNNIDSFKQKLIQTIENYQIPKEI 362
G +I ++Y++ P +SFK+ L + E Y K++
Sbjct: 152 GGTHANNSIDFQEYMIMPLGFESFKEALRASAEVYHTLKKL 192
>ref|NP_223748.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 393
Score = 23.5 bits (49), Expect = 9.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 283 HNALKTLLKYPNVEIHDL 300
H+ALKT LK+ + IH++
Sbjct: 324 HDALKTFLKHYFLHIHEI 341
>ref|NP_223732.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [Helicobacter pylori J99]
Length = 378
Score = 23.5 bits (49), Expect = 9.1
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 11/65 (16%)
Query: 55 FEGVIKHYPYNNILIGTSISLNFSLKDIHDLLGLKDPIKLTVSGMNIGEILSLLPFAFKH 114
FEG +K S+ NF L +I LGL K + E+ + FK
Sbjct: 218 FEGEVK-----------SVGYNFRLNEIQSALGLSQLKKAPLLRQKREEVALIYDEIFKD 266
Query: 115 QPVNT 119
P T
Sbjct: 267 NPYFT 271
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 23.5 bits (49), Expect = 9.1
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 56 EGVIKHYPYNNILIGTSISL----NFSLKDIHDLLGLKDPIKLTVSGMNIGEILSLLPFA 111
+ +I HY + L+ I L N +LK++ + + + K+ +S G+ L+L+ A
Sbjct: 300 QAIINHYQSHLPLMPEQILLSACSNETLKELQEFISHQYSKKIALSIPKKGDKLALIEIA 359
Query: 112 FKH 114
K+
Sbjct: 360 MKN 362
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 23.5 bits (49), Expect = 9.1
Identities = 12/63 (19%), Positives = 24/63 (38%)
Query: 144 FTGGFVYLYNFGVLKNALFYFSTNYLKIKEKTFCKLNSWFQLYDFCNSVLNRYDFDFMFS 203
+ F+ F + N + + +++ LN + + SV Y +DFMF
Sbjct: 2696 YARAFLKRNEFTLSANETYGGNASHINSSNSLLSVLNQRYNYNTWTTSVNGNYGYDFMFK 2755
Query: 204 HNN 206
+
Sbjct: 2756 QKS 2758
>ref|NP_222897.1| putative cardiolipin synthase [Helicobacter pylori J99]
Length = 502
Score = 23.5 bits (49), Expect = 9.1
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 80 KDIHDLLGLKDPIKLTVSGMNIGEILSLLPFAFKHQPVNTVAMDLAFFEFILNKESKYFF 139
K +H+ L + D + + G NIG+ + N + +D FF + +K + F
Sbjct: 164 KRMHNKLFIVDNFAVIIGGRNIGD-----NYFDNDLDTNFLDLDALFFGGVASKAKESFE 218
Query: 140 EY 141
Y
Sbjct: 219 NY 220
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.142 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,395
Number of Sequences: 1491
Number of extensions: 23832
Number of successful extensions: 94
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 27
length of query: 364
length of database: 494,079
effective HSP length: 79
effective length of query: 285
effective length of database: 376,290
effective search space: 107242650
effective search space used: 107242650
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)