BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645476|ref|NP_207651.1| phosphoheptose isomerase
(gmhA) [Helicobacter pylori 26695]
(192 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223509.1| phosphoheptose isomerase [Helicobacter pyl... 348 4e-98
ref|NP_224138.1| glutamine fructose-6-phosphate aminotransf... 55 9e-10
ref|NP_223999.1| putative [Helicobacter pylori J99] 31 0.019
ref|NP_223423.1| MOLYBDOPTERIN COFACTOR BIOSYNTHETIC PROTEI... 30 0.055
ref|NP_224049.1| putative [Helicobacter pylori J99] 26 0.79
ref|NP_223269.1| UROPORPHYRINOGEN DECARBOXYLASE [Helicobact... 26 0.79
ref|NP_223724.1| putative [Helicobacter pylori J99] 25 1.0
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 25 1.0
ref|NP_224114.1| putative component of cation transport for... 25 1.3
ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter ... 25 1.3
ref|NP_223919.1| ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE [He... 23 3.9
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 23 6.7
ref|NP_222996.1| DIAMINOPIMELATE DECARBOXYLASE [Helicobacte... 23 6.7
ref|NP_223959.1| putative [Helicobacter pylori J99] 22 8.7
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 22 8.7
ref|NP_222956.1| ABC transporter, ATP-binding protein [Heli... 22 8.7
>ref|NP_223509.1| phosphoheptose isomerase [Helicobacter pylori J99]
Length = 192
Score = 348 bits (894), Expect = 4e-98
Identities = 178/192 (92%), Positives = 184/192 (95%)
Query: 1 MIDNLIKKEFLAHKEALEKSLEGLQEALKQSVHLLIETLENQGKILICGNGGSASDAQHF 60
MID+LI+KEFLAHKEALEKSLE LQ+ALKQSVHLLIETLENQGKILICGNGGSASDAQHF
Sbjct: 1 MIDDLIQKEFLAHKEALEKSLESLQDALKQSVHLLIETLENQGKILICGNGGSASDAQHF 60
Query: 61 AAELTGRYKLERKGLSAISLNTDISALTAIANDYGYEEVFARQVEALGVKNDVLIGISTS 120
AAELTGRYKLERKGLS ISL+TD SALTAIANDYGYEEVFARQVEALG K D+LIGISTS
Sbjct: 61 AAELTGRYKLERKGLSVISLSTDTSALTAIANDYGYEEVFARQVEALGNKEDILIGISTS 120
Query: 121 GNSKNVLKAYEKAKDLEMKTLSLAGRDGGKMKPLSDMALIVPSDDTPRIQEMHILMIHIL 180
GNSKNVLKAYEKAKDL MKTLSLAGRDGGKMKPLSD+ALIVPS DTPRIQEMHILMIHIL
Sbjct: 121 GNSKNVLKAYEKAKDLGMKTLSLAGRDGGKMKPLSDIALIVPSGDTPRIQEMHILMIHIL 180
Query: 181 CDCIERHFAHKN 192
CDCIERHFA KN
Sbjct: 181 CDCIERHFARKN 192
>ref|NP_224138.1| glutamine fructose-6-phosphate aminotransferase [Helicobacter
pylori J99]
Length = 597
Score = 55.5 bits (132), Expect = 9e-10
Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 21/158 (13%)
Query: 4 NLIKKEFLAHKEALEKSLEGLQEALKQSVHLLIETLENQGKILICGNGGSASDAQHFAAE 63
N ++KE +L + LEG EAL + E LEN +I +C G S + A
Sbjct: 246 NYLEKEIYEQHSSLLECLEGRLEALSVYCEIDPEFLENVSEITLCSCGSS------YHAS 299
Query: 64 LTGRYKLERKGLSAISLNTDISALTAIANDYGYEEVFARQVEALGVKNDVLIGISTSGNS 123
L Y ER I A +A++Y Y + N++ I IS SG +
Sbjct: 300 LASVYLFERLA--------KIRARAILASEYRYAHFKSNP-------NELFIAISQSGET 344
Query: 124 KNVLKAYEKAKDLEMKTLSLAGRDGGKMKPLSDMALIV 161
+ L+A + AK +KT+SL M +SD L++
Sbjct: 345 ADTLEALKLAKAQGLKTISLCNAPFSMMSRISDHTLLI 382
Score = 22.7 bits (47), Expect = 6.7
Identities = 16/48 (33%), Positives = 26/48 (53%), Gaps = 6/48 (12%)
Query: 5 LIKKEFLAHKEALEKSLEGLQEA-LKQS-----VHLLIETLENQGKIL 46
L+ + + +L+K LE A L Q+ HLL ETL+++G +L
Sbjct: 96 LVHNGIIENYASLKKELENKGHAFLSQTDTEVIAHLLEETLKSEGDLL 143
>ref|NP_223999.1| putative [Helicobacter pylori J99]
Length = 464
Score = 31.2 bits (69), Expect = 0.019
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 2 IDNLIKKEFLAHKEAL-EKSLEGLQEALKQSVHLLIETLENQGKILICGNGGSASDAQHF 60
+D + +E+L ++ L E + L+ A+ Q+ L + I++CG+G + D
Sbjct: 11 LDKRVLEEWLLSEDILMENAAMALERAVLQNASLGAKV------IILCGSGDNGGDGYTL 64
Query: 61 AAELTGRYK 69
A L GR+K
Sbjct: 65 ARRLVGRFK 73
>ref|NP_223423.1| MOLYBDOPTERIN COFACTOR BIOSYNTHETIC PROTEIN [Helicobacter pylori
J99]
Length = 321
Score = 29.6 bits (65), Expect = 0.055
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 11 LAHKEALEKSLEGLQEALKQSVHLLIETLENQG 43
++ K+AL+ +LEG++E+LK + L + T+ +G
Sbjct: 131 ISQKDALKNTLEGIEESLKVGLKLKLNTVVMKG 163
>ref|NP_224049.1| putative [Helicobacter pylori J99]
Length = 161
Score = 25.8 bits (55), Expect = 0.79
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 9/126 (7%)
Query: 48 CGNGGSASDAQHFAAELTGRYKLERKG----LSAISLNTDISALTAIANDYGYEEVFARQ 103
CGNGG A G ++++ K + + LN A+ + ++ Q
Sbjct: 22 CGNGGGGESPVEMIANSEGTFQIDSKADSITIQGVKLNRGNCAVNFVPVSETFQMGVLSQ 81
Query: 104 VEALGVKN--DVLIGISTSGNSKNVLKAYEKAKDLEMKTLSLAGRD---GGKMKPLSDMA 158
V + +++ D+ K + K LE K + + + G +K +S
Sbjct: 82 VTPISIQDFKDMASTYKIFDQKKGLANIANKISQLEQKGVMMEPQTLNFGESLKGISQGC 141
Query: 159 LIVPSD 164
I+ ++
Sbjct: 142 NIIEAE 147
>ref|NP_223269.1| UROPORPHYRINOGEN DECARBOXYLASE [Helicobacter pylori J99]
Length = 339
Score = 25.8 bits (55), Expect = 0.79
Identities = 15/48 (31%), Positives = 26/48 (53%), Gaps = 4/48 (8%)
Query: 8 KEFLAHKEALEKSLEGLQ----EALKQSVHLLIETLENQGKILICGNG 51
K+ L K L+ +LE + AL++ V +++ + NQG I G+G
Sbjct: 269 KKILGGKYVLQGNLEPTRLYDKNALEEGVEKILKVMGNQGHIFNLGHG 316
>ref|NP_223724.1| putative [Helicobacter pylori J99]
Length = 226
Score = 25.4 bits (54), Expect = 1.0
Identities = 34/137 (24%), Positives = 53/137 (37%), Gaps = 35/137 (25%)
Query: 11 LAHKEALEK--SLEGLQEALKQSVHLLIETLE--NQGKILICGNGGSASDAQHFAAELTG 66
+A K AL + ++ L+ + HL++ +E N KIL N S F A+ +
Sbjct: 54 IAKKHALLRLVGVQPLEIMANKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQ 113
Query: 67 RY------KLERKGLSAISLNTDISALTAIANDYGYEEVFARQVEALGVKNDVLIGISTS 120
R KLER ++++ E G VL+ +
Sbjct: 114 RNEKIDSAKLER-----------------------FQKILIHSCEQCG--RSVLMELEAF 148
Query: 121 GNSKNVLKAYEKAKDLE 137
N+K LKAY KA L+
Sbjct: 149 SNTKEALKAYPKASVLD 165
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 25.4 bits (54), Expect = 1.0
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 22/111 (19%)
Query: 78 ISLNTDISALTAIANDYGYEEVFAR----------QVEALGVKNDVLIGISTSGNSKNVL 127
+ +N DISA A +Y ++F++ + E LG+KN + N+ L
Sbjct: 627 LDINYDISAKIAENREYALNQIFSKLKAFDHQNLSEEELLGLKNI----LKEDFNASVEL 682
Query: 128 KAYEKAKDLEMKTLSLAGRD-GGKMKPLSDMALIVPSDDTPRIQEMHILMI 177
+ EKA +E D KMK L S+ RI+ + L I
Sbjct: 683 EDLEKASPIEKFVAEKLKSDYENKMKALD-------SEQRSRIERIVYLQI 726
>ref|NP_224114.1| putative component of cation transport for cbb3-type oxidase
[Helicobacter pylori J99]
Length = 788
Score = 25.0 bits (53), Expect = 1.3
Identities = 14/41 (34%), Positives = 23/41 (55%)
Query: 24 LQEALKQSVHLLIETLENQGKILICGNGGSASDAQHFAAEL 64
L+E LK + +I+ L+NQG L +G + S + A +L
Sbjct: 616 LEERLKANAKEVIQALQNQGLELEILSGDNESSVKECAKKL 656
>ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter pylori J99]
Length = 336
Score = 25.0 bits (53), Expect = 1.3
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 51 GGSASDAQHFAAELTGRYKLERKGLSAISLNTDISALTAIANDYGYEEVFARQVEALGVK 110
GG H A L K+E G+ I N +I A TAI VF + GVK
Sbjct: 172 GGDGFGYAHTA--LGEHVKIEHVGIVRIQKNVEIGANTAID-----RAVFGETLIKEGVK 224
Query: 111 NDVLIGI 117
D L+ I
Sbjct: 225 IDNLVQI 231
>ref|NP_223919.1| ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 335
Score = 23.5 bits (49), Expect = 3.9
Identities = 14/43 (32%), Positives = 22/43 (50%), Gaps = 4/43 (9%)
Query: 26 EALKQSVHLLIETLENQGK----ILICGNGGSASDAQHFAAEL 64
E K+SV ++ LEN+GK +++ N S H A +L
Sbjct: 264 ENAKESVQACLDILENKGKDSHTMVVAANVASLLYLSHRAKDL 306
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 22.7 bits (47), Expect = 6.7
Identities = 11/32 (34%), Positives = 17/32 (52%)
Query: 44 KILICGNGGSASDAQHFAAELTGRYKLERKGL 75
KI + +GG+ SD Q A +++ KGL
Sbjct: 885 KIFLRNDGGNLSDYQRLANVTEKEFEIITKGL 916
>ref|NP_222996.1| DIAMINOPIMELATE DECARBOXYLASE [Helicobacter pylori J99]
Length = 405
Score = 22.7 bits (47), Expect = 6.7
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Query: 6 IKKEFLAHKEALEKSLEGLQEALKQSVHL-LIETLENQGKILICGNGGSASDAQHFAAEL 64
IK+ FL +KEA + + ALK + +L ++ L N G C + G A +
Sbjct: 23 IKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLANLGSGADCVSIGEIQRALKAGIK- 81
Query: 65 TGRYKLERKGL--SAISLNTDISALTAIANDYGYEEVFARQ--VEALGVKNDVLIGISTS 120
YK+ G+ SA + + N + E+ + ++LG+K + I I+ +
Sbjct: 82 --PYKIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPN 139
Query: 121 GNSK 124
++K
Sbjct: 140 IDAK 143
>ref|NP_223959.1| putative [Helicobacter pylori J99]
Length = 376
Score = 22.3 bits (46), Expect = 8.7
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 123 SKNVLKAYEKAKDLEM----KTLSLAGRDGGKM---KPLSDMALIVPSDDTPRIQEMHIL 175
S ++L +E LE+ L D G P S +ALI + TP E +L
Sbjct: 274 SPSLLNVFENMVFLELYKQFPNYELYAHDNGIFILRNPTSKLALIAHAFPTPHFLEKQLL 333
Query: 176 MIH 178
H
Sbjct: 334 WCH 336
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 22.3 bits (46), Expect = 8.7
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 18 EKSLEGLQEALKQSVHLLIETLENQGKILICGNGGSASDAQHFAAELTGRYKLERKGLSA 77
++S E E LKQ+ L L +GK++I N S + Q + + S
Sbjct: 627 KESKERFIELLKQAKDNLSINLNEEGKVIIQDNMHSNTKMQFML------FDKDANDFSQ 680
Query: 78 ISLNTDISALTAIAND 93
+L++D +L AN+
Sbjct: 681 NALHSDKPSLKLNANN 696
>ref|NP_222956.1| ABC transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 516
Score = 22.3 bits (46), Expect = 8.7
Identities = 15/54 (27%), Positives = 30/54 (54%), Gaps = 3/54 (5%)
Query: 41 NQGKILICGNGGSASDA--QHFAAELTGRYKLERKGLSAISLNTDISALTAIAN 92
N K+LIC +A DA Q+ +L + +E K ++ + ++ D+ A+ +A+
Sbjct: 162 NAPKLLICDEPTTALDAQIQNQILDLLKQLSVE-KNIALLFISHDLKAVKRLAD 214
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.134 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,442
Number of Sequences: 1491
Number of extensions: 7909
Number of successful extensions: 62
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 17
length of query: 192
length of database: 494,079
effective HSP length: 73
effective length of query: 119
effective length of database: 385,236
effective search space: 45843084
effective search space used: 45843084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)