BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644717|ref|NP_206887.1| hypothetical protein
[Helicobacter pylori 26695]
(457 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222802.1| putative [Helicobacter pylori J99] 824 0.0
ref|NP_224134.1| putative [Helicobacter pylori J99] 30 0.13
ref|NP_222904.1| S-adenosylmethionine synthetase [Helicobac... 30 0.13
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 27 1.1
ref|NP_223384.1| putative [Helicobacter pylori J99] 27 1.4
ref|NP_223790.1| putative [Helicobacter pylori J99] 26 1.8
ref|NP_223290.1| putative [Helicobacter pylori J99] 26 1.8
ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 26 2.4
ref|NP_223809.1| putative [Helicobacter pylori J99] 25 4.1
ref|NP_222950.1| putative histidine kinase sensor protein [... 25 4.1
ref|NP_223199.1| cag island protein [Helicobacter pylori J99] 25 5.4
ref|NP_223662.1| putative [Helicobacter pylori J99] 24 7.0
ref|NP_223617.1| putative [Helicobacter pylori J99] 24 7.0
ref|NP_223386.1| putative [Helicobacter pylori J99] 24 7.0
ref|NP_223280.1| putative lipopolysaccharide biosynthesis p... 24 7.0
ref|NP_222840.1| putative [Helicobacter pylori J99] 24 7.0
ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTE... 24 9.2
ref|NP_223429.1| TYROSYL-TRNA SYNTHETASE [Helicobacter pylo... 24 9.2
>ref|NP_222802.1| putative [Helicobacter pylori J99]
Length = 457
Score = 824 bits (2128), Expect = 0.0
Identities = 405/457 (88%), Positives = 426/457 (92%)
Query: 1 MRYFLVVFLFLFVGCTKKDFTLKDLSLPQEASSYLASSQNGSNNNQSIDPQALRENLKES 60
MRYFLVVFLFLFVGC KKDFTLKDLSLPQEASSYLASSQN S+NNQSIDPQALRENLKES
Sbjct: 1 MRYFLVVFLFLFVGCMKKDFTLKDLSLPQEASSYLASSQNSSHNNQSIDPQALRENLKES 60
Query: 61 YLKAWYSPWLDMKVKSNKKEVFWILKEMNKSTGYGEDLKPNAKAFNDALIKSMDIEHYPS 120
YLKAWYSPWLD KVKSNKKEVFWILKEMNKSTGYGEDLKPNAKAFND LIK+MDIE YPS
Sbjct: 61 YLKAWYSPWLDAKVKSNKKEVFWILKEMNKSTGYGEDLKPNAKAFNDELIKNMDIERYPS 120
Query: 121 VKIRAVVARDSDVRAVPTNKPYYLSQKGYPFDRYQNSLIFQGTPVLITHFNLDKTYAHIQ 180
KI+AVV R++DVRAVPTNKPYYLS KGYPFDR+QNSL+F GTPVLIT FN DKTY +Q
Sbjct: 121 TKIKAVVVRNNDVRAVPTNKPYYLSPKGYPFDRFQNSLVFPGTPVLITPFNPDKTYPPLQ 180
Query: 181 SSFVYGWIKVSDLVYMHDKDIELLTHLKDYVMPIKDKIPLYTDYGDFYTNARVGELFALI 240
SSFVYGWIKVS+L YM DK+IELLT LK+Y MPIK+K PLYTDYG+FY +A++GELF LI
Sbjct: 181 SSFVYGWIKVSELAYMRDKEIELLTKLKNYDMPIKEKNPLYTDYGEFYPHAKIGELFPLI 240
Query: 241 PQSQKTPQKPQKKELKAYGFLRDAKGYAALQSVILEEKDFFVFPKAFNSENMAYFIDTML 300
PQ Q Q P KKELKAYGFL+DAKGYAALQSV L+EKDFFVFPKAF SE MAYFI+TML
Sbjct: 241 PQIQNASQIPPKKELKAYGFLKDAKGYAALQSVFLDEKDFFVFPKAFTSEIMAYFINTML 300
Query: 301 GQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSSMKAKEKEDYIL 360
GQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSSMKAKEKEDYI+
Sbjct: 301 GQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSSMKAKEKEDYII 360
Query: 361 KNATPFGTLIYLKGHIMLYLGAHNHQAIVAHSIWSVQTQKHFKTLSHKIGGVVITSLWLA 420
KNATPFGTLIYLKGHIMLYLG NHQAIVAHSIWSVQTQKHFKTLSHKIGGVVITSLWLA
Sbjct: 361 KNATPFGTLIYLKGHIMLYLGERNHQAIVAHSIWSVQTQKHFKTLSHKIGGVVITSLWLA 420
Query: 421 EEHNGAFSKKKLLIDRVLGMSDLKDFVNKTSSPLNAN 457
EEHNGAFSKKKLLIDRVLGMSDLKDFV+KTSSPLNAN
Sbjct: 421 EEHNGAFSKKKLLIDRVLGMSDLKDFVHKTSSPLNAN 457
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 30.0 bits (66), Expect = 0.13
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 26 SLPQEASSYLASSQNGSNNNQ-SIDPQALRE-NLKESYLKAWYSPWLDMKVKSNKKEVFW 83
+LP SS AS N SN N+ +++ QA+R+ N+KE W + D +++ +
Sbjct: 203 TLPNNTSSADASENNESNENRDNVEKQAIRDPNIKEFACGKWV--YDDENLQAYRPS--- 257
Query: 84 ILKEMNKSTGYGEDLKP 100
ILK ++K D+ P
Sbjct: 258 ILKRVDKDKEITTDITP 274
>ref|NP_222904.1| S-adenosylmethionine synthetase [Helicobacter pylori J99]
Length = 385
Score = 30.0 bits (66), Expect = 0.13
Identities = 39/171 (22%), Positives = 66/171 (37%), Gaps = 40/171 (23%)
Query: 228 YTNARVGELFALIPQSQKTPQKPQKKELKAYGFLRDAKGYAALQSVILEEKDFFVFPKAF 287
Y N + + ++ +Q +P+ QK L+ ++EE + V PK +
Sbjct: 173 YENNKPVSVDTIVISTQHSPEVSQKH----------------LKEAVIEEIVYKVLPKEY 216
Query: 288 NSENMAYFIDT----MLGQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANN 343
+N+ +FI+ ++G G GL G + D++ F P A S +
Sbjct: 217 LHDNIKFFINPTGKFVIGGPQGDAGLTGRK----IIVDTYGGF---CPHGGGAFSGKDPS 269
Query: 344 YVDLSSMKAKEKEDYILKNATPFGT-------LIYLKG---HIMLYLGAHN 384
VD S+ A Y+ KN G L Y G + +Y+ HN
Sbjct: 270 KVDRSAAYAAR---YVAKNLVASGVCDKATVQLAYAIGVIEPVSIYVNTHN 317
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 26.9 bits (58), Expect = 1.1
Identities = 17/57 (29%), Positives = 26/57 (44%), Gaps = 6/57 (10%)
Query: 227 FYTN----ARVGELFALIPQSQKTPQKPQKKELKAYGFLRDAKGYAALQSVILEEKD 279
FY N A+ ++ A + Q P+ EL Y L+ K + SV+LE K+
Sbjct: 275 FYENLEQCAKAAQILAALKAKQ--PEMISSAELMDYASLKSVKNLEGMPSVVLEVKE 329
>ref|NP_223384.1| putative [Helicobacter pylori J99]
Length = 355
Score = 26.6 bits (57), Expect = 1.4
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 260 FLRD-AKGYAALQSVILEEKDFFVFPKAFNSENMA---YFIDTMLGQKYGWGGLLGNRDC 315
FL D A +AA + +E D + P + +N+ +FI + L + R+
Sbjct: 64 FLTDYANLFAAKVIKVSKEIDESLIPSYYKEKNLEVEDFFIISDLRELV--------RED 115
Query: 316 SAFTRDSFANFGILLPRNSYAQSRYANNYVDLSSMKAKEKEDYIL 360
+ RD F I ++YA Y NNYV ++ KE+ Y L
Sbjct: 116 FSLLRDQFLANSIAPNNHTYAI--YGNNYVYPLPVRLKEERSYFL 158
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 26.2 bits (56), Expect = 1.8
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 17/107 (15%)
Query: 22 LKDLSLPQEASSYLASSQNGSNNNQSI--------DPQALRENLKESYLKAWYSPWLDM- 72
L DL QE L S NN + + +P+ E LK Y P+ ++
Sbjct: 38 LADLKAIQETDERLKESNFNFNNPEQLLALIRSFLEPE---EELKRIYFYV-SEPFTEVE 93
Query: 73 -KVKSNKKEVFWILKEMNKSTGYGEDLKPNA--KAFNDALIKSMDIE 116
++KSNKKE KE N Y E + + ++FN A+ + ++
Sbjct: 94 PRIKSNKKEELEEYKEKNPKE-YEEKVNKSGIIQSFNHAIAQQNQVK 139
>ref|NP_223290.1| putative [Helicobacter pylori J99]
Length = 683
Score = 26.2 bits (56), Expect = 1.8
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 16/98 (16%)
Query: 33 SYLASSQNGSNNNQSIDP------QALRENLKESYLKAWYSPWLDMKVKSNKKEVFWILK 86
+YL +N N N+ + L E ++K + + + +VK ++EV++ LK
Sbjct: 215 NYLMMGENSDNQNRLYNTYWVPLENWLGEKDLNDFIKTYLRIYFEDRVKEGEREVYYALK 274
Query: 87 E------MNKSTGYGEDLKPNAKAFNDALIKSMDIEHY 118
N G D++ + F L D +HY
Sbjct: 275 AHHRDNFPNNIQGLMSDMREYGRIFQIFL----DRDHY 308
>ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 624
Score = 25.8 bits (55), Expect = 2.4
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 280 FFVFPKAFNSENMAYFIDTMLGQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSR 339
F +F KA +S ++Y I++ +G+K + L ++ F N ++LP + Q
Sbjct: 320 FRIFDKAVDSLFLSYLINSEIGRK-AFENLAQGSTRYNLSKSGFNNVCLILPPLN-EQIA 377
Query: 340 YANNYVDLS----SMKAKEKEDYILKNATPFGTL 369
AN D+ S+K K+++ +K A F L
Sbjct: 378 IANILSDVDSEIISLKNKKRQFENVKKALSFELL 411
Score = 23.9 bits (50), Expect = 9.2
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 280 FFVFPKAFNSENMAYFIDTMLGQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSR 339
F +F KA +S ++Y I++ +G+K + L ++ F N ++LP + Q
Sbjct: 524 FRIFDKAVDSLFLSYLINSEIGRK-AFENLAQGSTRYNLSKSGFNNVCLILPPLN-EQIA 581
Query: 340 YANNYVDLS----SMKAKEKEDYILKNA 363
AN D+ S+K K+++ +K A
Sbjct: 582 IANILSDVDSEIISLKNKKRQFENVKKA 609
>ref|NP_223809.1| putative [Helicobacter pylori J99]
Length = 386
Score = 25.0 bits (53), Expect = 4.1
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 16/111 (14%)
Query: 274 ILEEKDFFVFPKAFNSENMAY--FIDTMLGQKYGWGGLLGNRDCSAFTRDSFANFGILLP 331
++ K+ F+ F + ++ F D+ + WG CS+ T ++ I
Sbjct: 65 LMSRKNLFLVSNVFLIASFSFVLFFDSFILMLLAWGLYGLYSACSSGTIEASLITDI--- 121
Query: 332 RNSYAQSRYANNYVDLSSMKAKEKEDYILKN--ATPFGTLIYLKGHIMLYL 380
N DLS AK + L + G+ +YLK H MLY+
Sbjct: 122 ---------KENKKDLSKFLAKNNQITYLGMIIGSSLGSFLYLKVHAMLYV 163
>ref|NP_222950.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 381
Score = 25.0 bits (53), Expect = 4.1
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 16/94 (17%)
Query: 342 NNYVDLSSMKAKEKEDYI--LKNATPFGTLIYLKGHIMLYLGAHNHQAIVAHSIWSVQTQ 399
NN + L + K KE ED + N L+ L +L + V+ +
Sbjct: 34 NNVISLENFKPKESEDLLENFSNKKDMQELLELLNQFIL-------------QSYKVEKE 80
Query: 400 -KHFKTLSHKIGGVVITSLWLAEEHNGAFSKKKL 432
K +K L + ++ ++W+ E+ F K L
Sbjct: 81 FKDYKALYEWVIEILPQAIWVMNENGSFFYKNSL 114
>ref|NP_223199.1| cag island protein [Helicobacter pylori J99]
Length = 280
Score = 24.6 bits (52), Expect = 5.4
Identities = 16/46 (34%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Query: 200 DIELLTHLKDYVMPIKDKIPLYTDYGDFYTNARVGELFALIPQSQK 245
+I L LKD ++ K+P Y DY N +V F L+ S+K
Sbjct: 49 EIPLNDKLKDTPFMVQVKLPNYKDY--LLDNKQVVLTFKLVHHSKK 92
>ref|NP_223662.1| putative [Helicobacter pylori J99]
Length = 668
Score = 24.3 bits (51), Expect = 7.0
Identities = 10/32 (31%), Positives = 16/32 (49%)
Query: 32 SSYLASSQNGSNNNQSIDPQALRENLKESYLK 63
S+ S NGS++N + +P + N Y K
Sbjct: 309 STNTTSPTNGSSSNNATNPSSQENNYSSQYCK 340
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 24.3 bits (51), Expect = 7.0
Identities = 11/37 (29%), Positives = 19/37 (50%)
Query: 23 KDLSLPQEASSYLASSQNGSNNNQSIDPQALRENLKE 59
KD L Y ++GS N +++DP+ +L+E
Sbjct: 184 KDTKLVSSHDQYEKIKKSGSLNTKNLDPRIQANSLQE 220
>ref|NP_223386.1| putative [Helicobacter pylori J99]
Length = 569
Score = 24.3 bits (51), Expect = 7.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 93 GYGEDLKPNAKAFNDALIKSMDIEHYPSVKIRAVVARDSDVRAVPT 138
G+ E A A+ D L KSM I+H S + D ++ V T
Sbjct: 64 GFSEGKTSIAAAWIDRLDKSMKIDHQESSDEVKIYHIDDEIELVDT 109
>ref|NP_223280.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 332
Score = 24.3 bits (51), Expect = 7.0
Identities = 10/13 (76%), Positives = 11/13 (83%)
Query: 246 TPQKPQKKELKAY 258
T QKPQKK LK+Y
Sbjct: 278 TIQKPQKKSLKSY 290
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 24.3 bits (51), Expect = 7.0
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 24 DLSLPQEASSYLASSQNGSNNNQSIDPQALRENLKESYLK 63
+L ++ +++SS+ +++N +DP LKE+ K
Sbjct: 202 ELESHTDSPEFISSSKTQNSSNPDLDPMTNANTLKETASK 241
>ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori
J99]
Length = 448
Score = 23.9 bits (50), Expect = 9.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 433 LIDRVLGMSDLKDFVNKTSSPLNAN 457
++ R++G D+ KT+S LN N
Sbjct: 282 IVGRLMGAGDIISLAEKTASVLNPN 306
>ref|NP_223429.1| TYROSYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 402
Score = 23.9 bits (50), Expect = 9.2
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 45 NQSIDPQALRENLKESYLKAWYSPWLDMKVKSNKKEVF------WILKEMNKSTGYGEDL 98
+Q++ P+A++E+L + +Y K K +VF IL E + G G
Sbjct: 286 HQTLHPKAVKEDLASEIVARYYDNDQAFKAKEQFSKVFSANLLPEILLESDFDEGVGVLD 345
Query: 99 KPNAKAFNDALIKSMDIEHYPSVKIRAVVARDSDVRAVPTNKPYYLSQKGY 149
F + ++ VKI V +D R V N L +K +
Sbjct: 346 VLKQIGFCPSTSQARRDIQGGGVKINQEVVKDESYRFVKGNYVIQLGKKRF 396
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,444
Number of Sequences: 1491
Number of extensions: 26101
Number of successful extensions: 75
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 19
length of query: 457
length of database: 494,079
effective HSP length: 81
effective length of query: 376
effective length of database: 373,308
effective search space: 140363808
effective search space used: 140363808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)