BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645479|ref|NP_207654.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(173 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223512.1| putative [Helicobacter pylori J99] 333 1e-93
ref|NP_224115.1| putative [Helicobacter pylori J99] 24 2.0
ref|NP_224022.1| putative [Helicobacter pylori J99] 24 2.6
ref|NP_223571.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [... 24 2.6
ref|NP_224023.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_223794.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_223483.1| putative lipopolysaccharide biosynthesis p... 23 3.3
ref|NP_223260.1| putative [Helicobacter pylori J99] 23 4.4
ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylo... 23 4.4
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 23 4.4
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 23 5.7
ref|NP_222738.1| putative [Helicobacter pylori J99] 22 7.4
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 9.7
>ref|NP_223512.1| putative [Helicobacter pylori J99]
Length = 174
Score = 333 bits (855), Expect = 1e-93
Identities = 161/173 (93%), Positives = 167/173 (96%)
Query: 1 MNTNKALFLDRDGIINIDKGYVSQKEDFEFQKGIFELLKHAKSLGYKLLLITNQSGINRG 60
+ TNKALFLDRDGIINID+GYVSQKEDFEFQKGIFELLKH K+LGYKLLLITNQSGINRG
Sbjct: 2 ITTNKALFLDRDGIINIDRGYVSQKEDFEFQKGIFELLKHTKTLGYKLLLITNQSGINRG 61
Query: 61 YYTLKDFEQLTQYLQESLFKELGFNLDGIYFCRHAPEENCACRKPKPSLILQAAKEHQIC 120
YYTLKDFEQLT+YLQESL KELGFNLDGIYFCRHAPEENCACRKPKPSLILQAAKEHQIC
Sbjct: 62 YYTLKDFEQLTEYLQESLLKELGFNLDGIYFCRHAPEENCACRKPKPSLILQAAKEHQIC 121
Query: 121 LEQSFMIGDKESDMLAGLNAKVKNNLLLIQNPLKTPHSWIQCKDFKEMIDLIK 173
LE+SFMIGDKESDMLAGLNAKVKNNLLL QNPLKTPHSWIQCK+ KEMID IK
Sbjct: 122 LERSFMIGDKESDMLAGLNAKVKNNLLLTQNPLKTPHSWIQCKNLKEMIDWIK 174
>ref|NP_224115.1| putative [Helicobacter pylori J99]
Length = 238
Score = 24.3 bits (51), Expect = 2.0
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 109 LILQAAKEHQICLE-----QSFMIGDKESDMLAGLNAKVKNNLLLIQNPLKTPHSWIQCK 163
L++++ K ++ LE QSF DK + ++ G + L + PL T +S Q
Sbjct: 159 LVIESLKSVKLTLETLRFVQSFK--DKNAHLMLGAARNNSKSALKVLPPLITHNSKNQSD 216
Query: 164 DFKEMIDL 171
+ KE++++
Sbjct: 217 NTKEVLNI 224
>ref|NP_224022.1| putative [Helicobacter pylori J99]
Length = 309
Score = 23.9 bits (50), Expect = 2.6
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 48 LLLITNQSGI-NRGYYTLKDFEQ 69
LLL+ ++SG R YY L+DFE+
Sbjct: 8 LLLLNDESGKPTRYYYLLQDFEK 30
>ref|NP_223571.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [Helicobacter pylori
J99]
Length = 1085
Score = 23.9 bits (50), Expect = 2.6
Identities = 14/44 (31%), Positives = 22/44 (49%)
Query: 10 DRDGIINIDKGYVSQKEDFEFQKGIFELLKHAKSLGYKLLLITN 53
D I+ I G + + EF + K KSLGY+++LI +
Sbjct: 6 DISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINS 49
>ref|NP_224023.1| putative [Helicobacter pylori J99]
Length = 243
Score = 23.5 bits (49), Expect = 3.3
Identities = 16/60 (26%), Positives = 29/60 (47%), Gaps = 1/60 (1%)
Query: 23 SQKEDFEFQKGIFELLKHAKSLGYKLLLITNQSGINRGYYTLKDFEQLTQYLQESLFKEL 82
S K++ + K I LK K + + +L + I RG+ KD + + + SL K++
Sbjct: 56 SYKQNLQINK-IANDLKRDKIVDKRTILSVIDADIERGFIPPKDLLKQLEKISASLSKDI 114
>ref|NP_223794.1| putative [Helicobacter pylori J99]
Length = 117
Score = 23.5 bits (49), Expect = 3.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 151 NPLKTPHSWIQCKDF 165
+PL TP S +CKD+
Sbjct: 5 DPLNTPFSQAECKDY 19
>ref|NP_223483.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 273
Score = 23.5 bits (49), Expect = 3.3
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 22 VSQKEDFEFQKGIFELLKHAKSLGYKLLL 50
++ KEDF+ +G+ L KH + LGY L+
Sbjct: 128 ITLKEDFK--EGLDFLEKHIQELGYARLM 154
>ref|NP_223260.1| putative [Helicobacter pylori J99]
Length = 490
Score = 23.1 bits (48), Expect = 4.4
Identities = 14/51 (27%), Positives = 25/51 (48%)
Query: 110 ILQAAKEHQICLEQSFMIGDKESDMLAGLNAKVKNNLLLIQNPLKTPHSWI 160
IL+ K+ ++ L+ + I D + + L L+ N LKT HS++
Sbjct: 235 ILKIGKKEELPLKLNGAITDLNFNEDKAILTTENQGLYLVGNDLKTIHSYM 285
>ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 541
Score = 23.1 bits (48), Expect = 4.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 21 YVSQKEDFEFQKGIFELLKHAKSL 44
Y S+KE F+ + +F+ L+ A +L
Sbjct: 248 YASEKEVFKHKDAVFDRLEKANAL 271
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 23.1 bits (48), Expect = 4.4
Identities = 17/62 (27%), Positives = 33/62 (52%), Gaps = 15/62 (24%)
Query: 27 DFEFQKGIFELLK-HAKSLGYKLLLITNQSGINRGYYTLKDFEQLTQYLQESLFKELGFN 85
DFE ++ + ELL+ ++K G + +LK++++ + Q+S++ LG N
Sbjct: 393 DFENKEKLLELLRFYSKDKGE--------------WISLKEYKENLKENQKSIYYLLGEN 438
Query: 86 LD 87
LD
Sbjct: 439 LD 440
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 22.7 bits (47), Expect = 5.7
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 38 LKHAKSLGYKLLLITNQSGINRGYYTLKDFEQLTQYLQESLFKELGFNLDGIY 90
LK AK+ KL + + R YY L DF+ T +++L N Y
Sbjct: 589 LKAAKTPSEKLTWLYR---LGRNYYRLGDFKNSTLASKDALILAQSLNKKEFY 638
>ref|NP_222738.1| putative [Helicobacter pylori J99]
Length = 469
Score = 22.3 bits (46), Expect = 7.4
Identities = 9/26 (34%), Positives = 16/26 (60%)
Query: 142 VKNNLLLIQNPLKTPHSWIQCKDFKE 167
V +L+ +NP ++ +WI +D KE
Sbjct: 243 VAQDLVFFKNPNRSHFTWIIIEDGKE 268
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 21.9 bits (45), Expect = 9.7
Identities = 20/58 (34%), Positives = 24/58 (40%), Gaps = 10/58 (17%)
Query: 25 KEDFEFQKGIFELLKHAKSLGYKLLLITNQSGINRGYYTLKDFEQLTQYLQESLFKEL 82
K D E K F K S+ Y + N G + EQL YL E LFKE+
Sbjct: 83 KLDEEILKKAFVKFKKQGSMDY--FIHKNAQGFLK--------EQLDLYLFEYLFKEM 130
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.140 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,519
Number of Sequences: 1491
Number of extensions: 9306
Number of successful extensions: 33
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 13
length of query: 173
length of database: 494,079
effective HSP length: 72
effective length of query: 101
effective length of database: 386,727
effective search space: 39059427
effective search space used: 39059427
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)