BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645480|ref|NP_207655.1| hypothetical protein
[Helicobacter pylori 26695]
(246 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223513.1| putative [Helicobacter pylori J99] 424 e-120
ref|NP_222971.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 42 2e-05
ref|NP_223535.1| putative [Helicobacter pylori J99] 33 0.009
ref|NP_223353.1| short-chain fatty acids transporter [Helic... 32 0.012
ref|NP_223337.1| putative [Helicobacter pylori J99] 30 0.046
ref|NP_223244.1| putative [Helicobacter pylori J99] 30 0.078
ref|NP_223910.1| NADH oxidoreductase I [Helicobacter pylori... 28 0.23
ref|NP_223019.1| putative [Helicobacter pylori J99] 28 0.23
ref|NP_223812.1| putative [Helicobacter pylori J99] 28 0.30
ref|NP_222932.1| putative [Helicobacter pylori J99] 27 0.50
ref|NP_223485.1| ATP synthase F0, subunit a [Helicobacter p... 27 0.66
ref|NP_223083.1| putative [Helicobacter pylori J99] 26 0.86
ref|NP_222880.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 26 0.86
ref|NP_224038.1| putative histidine-rich metal-binding prot... 26 1.1
ref|NP_223600.1| putative [Helicobacter pylori J99] 26 1.1
ref|NP_223187.1| putative cag island protein [Helicobacter ... 25 1.5
ref|NP_223141.1| GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYS... 24 3.3
ref|NP_224120.1| putative [Helicobacter pylori J99] 24 4.3
ref|NP_223813.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTE... 24 4.3
ref|NP_223751.1| putative Outer membrane protein [Helicobac... 23 5.6
ref|NP_223169.1| putative PHOSPHOLIPASE A1 [Helicobacter py... 23 5.6
ref|NP_223005.1| DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEI... 23 5.6
ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 23 7.3
ref|NP_222858.1| putative [Helicobacter pylori J99] 23 7.3
ref|NP_223413.1| putative [Helicobacter pylori J99] 23 9.5
ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicoba... 23 9.5
ref|NP_223138.1| putative [Helicobacter pylori J99] 23 9.5
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 23 9.5
ref|NP_223013.1| putative [Helicobacter pylori J99] 23 9.5
ref|NP_222896.1| putative [Helicobacter pylori J99] 23 9.5
>ref|NP_223513.1| putative [Helicobacter pylori J99]
Length = 245
Score = 424 bits (1089), Expect = e-120
Identities = 213/244 (87%), Positives = 224/244 (91%)
Query: 1 MQMMHNLSFLGMFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQLTCHALYNVGR 60
MQMM NLSFLGMFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQ+ CHALYNVGR
Sbjct: 1 MQMMQNLSFLGMFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQIACHALYNVGR 60
Query: 61 ISTYMLLGAIAASLGHSLSVSMGFRGVLFISMGIILICLALLGARMEKLSFQIPFISFLM 120
ISTYMLLGAI A LG+SLSVSMGFRGVL +SMGI+LI LALLGA+ EKLSFQIPFISFLM
Sbjct: 61 ISTYMLLGAITAGLGNSLSVSMGFRGVLLMSMGIVLILLALLGAKAEKLSFQIPFISFLM 120
Query: 121 KKTLQSQNILGLYFLGVLNGFLPCMMVYSFLASVILSHSAFMGAMLGLSFGLGTSMPLFL 180
KKTLQSQN+LGLYFLGVLNGFLPCMMVYSFLASVILSHS FMGAMLGLSFGLGTS+PLFL
Sbjct: 121 KKTLQSQNVLGLYFLGVLNGFLPCMMVYSFLASVILSHSTFMGAMLGLSFGLGTSVPLFL 180
Query: 181 MGIFLSKISVSYRKFFNLLSKILMGVFGLYILYMGIMLINHKMPHAMHHQNNTTQHDHKG 240
MGIFLSKIS+SYRKFFNLLSK LMGVFGLY+LYMGIMLI+H+ PHAM HQNN T
Sbjct: 181 MGIFLSKISISYRKFFNLLSKGLMGVFGLYVLYMGIMLISHQTPHAMRHQNNATPQQEGH 240
Query: 241 VHSH 244
H H
Sbjct: 241 FHDH 244
>ref|NP_222971.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 239
Score = 41.6 bits (96), Expect = 2e-05
Identities = 38/171 (22%), Positives = 81/171 (47%), Gaps = 8/171 (4%)
Query: 55 LYNVGRISTYMLLGAIAASLGHSLSVSMGFRGVLFISMGIILIC-LALLGARMEKLSFQI 113
++ VG ++ +G A L HS S F V +I+ GI+++ L LG ++
Sbjct: 66 MFVVGFSLVFLGVGMSMAKLIHSFS----FSWVNYIAGGIVILFGLHFLGVFRFAFLYKT 121
Query: 114 PFISFLMKKTLQSQNILGLYFLGVLNGFLPCM-MVYSFLASVILSHSAFMGAMLGLSFGL 172
+ K + L + G+ PC+ +++ + + S A+ G ML + F +
Sbjct: 122 QSVGLASKSNSMQRFYPFLLGMSFALGWTPCIGPIFTSIVIMSASKDAY-GLMLMVVFVM 180
Query: 173 GTSMPLFLMGIFLSKISVSYRKFFNLLSKILMGVFGLYILYMGIMLINHKM 223
G ++P L+ + L + ++ + K ++ + V GL ++ MGI+++ + +
Sbjct: 181 GLAIPFLLVALMLER-ALLFLKSLRKYNRAIEIVSGLVLILMGILIMTNSL 230
>ref|NP_223535.1| putative [Helicobacter pylori J99]
Length = 460
Score = 32.7 bits (73), Expect = 0.009
Identities = 36/148 (24%), Positives = 70/148 (46%), Gaps = 18/148 (12%)
Query: 89 FISMGIILICLALLGARMEKLSFQIPFI--SFLMKKTLQSQNILGLYFLGVLNGFLP--- 143
F +G++L+C ++ G + K ++ F F K TL + + LY LG+L L
Sbjct: 295 FFLVGVLLLC-SIGGIMLSKEITELLFERGQFSPKDTLITSQVFSLYLLGLLPFGLTKLF 353
Query: 144 CMMVYSFL----ASVILSHSAFMGAMLGLSF-----GLGTSMPLFLMGIFLSKISV---S 191
+ +Y+ L A+ I S F+G LS LG ++ L G+FL +++
Sbjct: 354 SLWLYAKLEQKKAAKISLISLFLGLAASLSLMPLLGVLGLALANSLSGLFLFVLTIKAFG 413
Query: 192 YRKFFNLLSKILMGVFGLYILYMGIMLI 219
++ F ++ + + L++ + I+L+
Sbjct: 414 FQSFLGIIKNLKSWLVILFLACVEILLL 441
>ref|NP_223353.1| short-chain fatty acids transporter [Helicobacter pylori J99]
Length = 454
Score = 32.3 bits (72), Expect = 0.012
Identities = 37/139 (26%), Positives = 62/139 (43%), Gaps = 8/139 (5%)
Query: 84 FRGVLFISMGIILICLALLGARMEKLSFQIPFI-SFLMKKTLQSQNILGLYFLGVLNGFL 142
F I +GIILI L L A + +I I S L+K + ++ + FL
Sbjct: 190 FSSYNLIIIGIILIGLPFLMAMIHPKKEEIVEIDSKLLKDEYKETELISHQQDKTIAHFL 249
Query: 143 PCMMVYSFLASVILSHSAFMGAML----GLSFGLGTSMPLFLMGIFLSKISVSYRKFFNL 198
+ S+L ++ ++G G+S + ++ LFL GI L K ++Y K N
Sbjct: 250 ENSALLSYL--LVFLGFGYLGIYFFKGGGISLNIVNTIFLFL-GILLHKTPLAYVKAINH 306
Query: 199 LSKILMGVFGLYILYMGIM 217
++ + G+ + Y GIM
Sbjct: 307 SARSVAGILLQFPFYAGIM 325
>ref|NP_223337.1| putative [Helicobacter pylori J99]
Length = 255
Score = 30.4 bits (67), Expect = 0.046
Identities = 22/75 (29%), Positives = 33/75 (43%), Gaps = 10/75 (13%)
Query: 145 MMVYSFLASVILSHSAFMGAMLGLSFGLGTSMPLFLMGIFLSKISVSYRKFFNLLSKILM 204
M++ SF+ SV+ + LGL G G + G L +S SKILM
Sbjct: 51 MVLSSFVGSVLNFKKKSLDFSLGLLIGAGGLIGASFSGFILKIVS----------SKILM 100
Query: 205 GVFGLYILYMGIMLI 219
+F L ++Y I +
Sbjct: 101 VIFALLVVYSMIQFV 115
>ref|NP_223244.1| putative [Helicobacter pylori J99]
Length = 183
Score = 29.6 bits (65), Expect = 0.078
Identities = 28/105 (26%), Positives = 51/105 (47%), Gaps = 10/105 (9%)
Query: 122 KTLQSQNILGLYFLGVLN---GFLPCMMVYSFLASVILSHSAFMGAMLGLSFGLGTSMPL 178
+TLQS +++ + L +L GFLP + + F+AS+I SA + L LS L L
Sbjct: 86 ETLQSYSVMLFFNLLLLTDILGFLPFSIYHHFMASLIF--SALFCSSLFLSSPL-----L 138
Query: 179 FLMGIFLSKISVSYRKFFNLLSKILMGVFGLYILYMGIMLINHKM 223
++ + S+ R F +L +L L++ + + L ++
Sbjct: 139 GVIALVALSSSLLMRSNFQILDSLLDFPLFLFVFFKTLYLAKKRL 183
>ref|NP_223910.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 612
Score = 28.1 bits (61), Expect = 0.23
Identities = 44/193 (22%), Positives = 84/193 (42%), Gaps = 20/193 (10%)
Query: 54 ALYNVGRIST-YMLLGAIAASLGHSLSVSMGFRGVLFISMGI---ILICLALLGARMEKL 109
ALY RI+ +M++G++A + + +L ++ G+ IL + L+GA
Sbjct: 365 ALYKPMRITAVFMIIGSVALCGIYPFAGYFSKDKILEVAFGMHHHILWFVLLIGAIFTAF 424
Query: 110 -SFQIPFISFLMKKTLQSQN-----------ILGLYFLGVLNGFLPCMMVYSFLASVILS 157
SF++ + F K + + +L L L V+ GF + F++ VI S
Sbjct: 425 YSFRLIMLVFFAPKQHEINHPHEAKNFMLLSMLPLGVLAVIAGFFE-EPFFHFISQVIPS 483
Query: 158 HSAFMGAMLGLSFGLGTSMPLFLMG--IFLSKISVSYRKFFNLLSKILMGVFGLYILYMG 215
++ L L + T + L + IF K ++ +K L K+L+ + + LY G
Sbjct: 484 VGEYL-VPLALLISITTIVVLLSIAYAIFKYKNGITSKKEGGFLYKLLLNQYYIPQLYQG 542
Query: 216 IMLINHKMPHAMH 228
+ + + +H
Sbjct: 543 MTKVFSAVASFLH 555
>ref|NP_223019.1| putative [Helicobacter pylori J99]
Length = 251
Score = 28.1 bits (61), Expect = 0.23
Identities = 26/111 (23%), Positives = 50/111 (44%), Gaps = 11/111 (9%)
Query: 82 MGFRGVLFISMGIILICLALLGARMEKLSFQIPFISFLMKKTLQSQNILGLY----FLGV 137
+G G+L IS I + A+ +R + F+ +++ Q L L + +
Sbjct: 54 IGLMGLLIISSAIFGLTQAITSSRSHNI-----FLFYMLSPATFKQITLALIASRLIVVI 108
Query: 138 LNGFLPCMMVYSFLASVILSHSAFMGAMLGLSFGLGTSMPLFLMGIFLSKI 188
L F+ +V SF A I++ F +LG +++ F + IF+++I
Sbjct: 109 LYAFI--FIVLSFYALNIITILNFKALILGFISIFSSALFCFCLAIFVARI 157
>ref|NP_223812.1| putative [Helicobacter pylori J99]
Length = 687
Score = 27.7 bits (60), Expect = 0.30
Identities = 20/64 (31%), Positives = 34/64 (52%), Gaps = 3/64 (4%)
Query: 73 SLGHSLSVSMG-FRGVLFIS--MGIILICLALLGARMEKLSFQIPFISFLMKKTLQSQNI 129
SLG + + MG F G++ +GI+LI +A+L + K P+ F + T+ +
Sbjct: 146 SLGEMIKLEMGKFVGMIASLGILGIMLIIIAILAMVVVKALAHSPWGFFTIAMTIPIAIL 205
Query: 130 LGLY 133
+GLY
Sbjct: 206 MGLY 209
>ref|NP_222932.1| putative [Helicobacter pylori J99]
Length = 277
Score = 26.9 bits (58), Expect = 0.50
Identities = 32/136 (23%), Positives = 63/136 (45%), Gaps = 20/136 (14%)
Query: 86 GVLFIS---MGIILICLALLGARMEKLSFQIPFISFLMKKTLQSQNILGLYFLGVLNGFL 142
GVL ++ GI I L + G + +PF+ + +K + LGL+F
Sbjct: 157 GVLMLAGFVTGIFSIPLGMGGGIL-----MVPFLGYFLKYDSKKIVPLGLFF-------- 203
Query: 143 PCMMVYSFLASVILSHSAFMGAMLGLSFGLGTSMPLFL-MGIFLSKISVSYRKFFNLLSK 201
+V++ L+ VI ++ + + + G+ T + FL +GI + I+++ K +L
Sbjct: 204 ---VVFASLSGVISLYNGKVLDDISVQAGVITGVGAFLGVGIGIKLIALANEKVHKILLL 260
Query: 202 ILMGVFGLYILYMGIM 217
++ + L L+ IM
Sbjct: 261 LIYALSILATLHKLIM 276
>ref|NP_223485.1| ATP synthase F0, subunit a [Helicobacter pylori J99]
Length = 226
Score = 26.6 bits (57), Expect = 0.66
Identities = 9/26 (34%), Positives = 18/26 (68%)
Query: 132 LYFLGVLNGFLPCMMVYSFLASVILS 157
L+F+G+L F+ ++ Y +LA +L+
Sbjct: 197 LFFMGILQAFVFMILTYVYLAGAVLT 222
>ref|NP_223083.1| putative [Helicobacter pylori J99]
Length = 249
Score = 26.2 bits (56), Expect = 0.86
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 48/199 (24%)
Query: 75 GHSLSVSMGFRGVLFISMGIILICLALL---GARMEKLSFQIPFISFLMKKTLQSQNILG 131
G ++V + F + ISM II L L G + +PF+ F G
Sbjct: 57 GVMVAVKISFSAAIVISMPIIFWQLWLFIAPGLYKNEKKVILPFVFFGS----------G 106
Query: 132 LYFLGVLNGF---LPCMMVY-----SFLASVILSHSAFMGAMLGLSFGLGTSMPLFLMGI 183
++ +G + P ++ Y S + + +S S+++ L G G + L ++
Sbjct: 107 MFLMGAAFSYYVVFPFIIEYLATFGSDVFAANISASSYVSFFTRLILGFGVAFELPVLAY 166
Query: 184 FLSKISV----SYRKFF-----------------NLLSKI-----LMGVFGLYILYMGIM 217
FL+K+ + S + +F +++S+I L+G++GL IL + M
Sbjct: 167 FLAKVGLITDASLKAYFKYAIVVIFIVAAIITPPDVVSQIFMALPLVGLYGLSIL-IAKM 225
Query: 218 LINHKMPHAMHHQNNTTQH 236
+ + H+N+ +H
Sbjct: 226 VNPAPKDNENDHENDAKEH 244
>ref|NP_222880.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 255
Score = 26.2 bits (56), Expect = 0.86
Identities = 27/91 (29%), Positives = 44/91 (47%), Gaps = 14/91 (15%)
Query: 31 IVSAFSQIRFSKVTSFSYQLTCHALYN---VGRI-STYMLLGAIAASLGHSLSVSMGFRG 86
IV AFS + F S ++ + C L + G I T+ +A +G + +++GF
Sbjct: 172 IVKAFSHL-FVIGFSMAFPILCLVLLSDIIFGMIMKTHPQFNLLA--IGFPVKIAIGF-- 226
Query: 87 VLFISMGIILICLALLGARMEKLSFQIPFIS 117
+GIILI A++G E++S IS
Sbjct: 227 -----VGIILIASAIMGRFKEEISLAFSVIS 252
>ref|NP_224038.1| putative histidine-rich metal-binding protein [Helicobacter pylori
J99]
Length = 60
Score = 25.8 bits (55), Expect = 1.1
Identities = 9/22 (40%), Positives = 10/22 (44%)
Query: 225 HAMHHQNNTTQHDHKGVHSHEH 246
H HH + H H G H H H
Sbjct: 11 HHHHHHHTHHHHYHGGEHHHHH 32
>ref|NP_223600.1| putative [Helicobacter pylori J99]
Length = 337
Score = 25.8 bits (55), Expect = 1.1
Identities = 11/31 (35%), Positives = 18/31 (57%), Gaps = 1/31 (3%)
Query: 196 FNL-LSKILMGVFGLYILYMGIMLINHKMPH 225
FNL ++ LMGV G++ + + L H + H
Sbjct: 36 FNLPIAVWLMGVLGMFAFFSWVFLFKHNLSH 66
>ref|NP_223187.1| putative cag island protein [Helicobacter pylori J99]
Length = 115
Score = 25.4 bits (54), Expect = 1.5
Identities = 21/53 (39%), Positives = 30/53 (55%), Gaps = 2/53 (3%)
Query: 64 YMLLGAIAAS-LGHSLSVSMGFRGVLFISMGIILICLAL-LGARMEKLSFQIP 114
Y LG I A L LS +MG G++F+++GI L + L +EKLS + P
Sbjct: 33 YDSLGLIGAGVLCCVLSGAMGIVGIIFVAIGIFLSFSNINLVKLVEKLSKKQP 85
>ref|NP_223141.1| GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYSTEM PROTEIN [Helicobacter
pylori J99]
Length = 416
Score = 24.3 bits (51), Expect = 3.3
Identities = 36/153 (23%), Positives = 68/153 (43%), Gaps = 24/153 (15%)
Query: 70 IAASLGHSLSVSMGFRGVLFISMGIILICLALLGARMEKLSFQIPFISFLMKKTLQSQNI 129
++ +G S + F+ + I M L+ L +LG++ ++ L+ KTL S I
Sbjct: 139 LSTPMGKSAVGILIFQDIAAIPM---LLILTILGSKDSH-------VNLLILKTLISAGI 188
Query: 130 LGLYFLGVLNGFLPCMMVYSFLASVILSHSAFMGAML-------GLS--FGLGTSMPLFL 180
+ + L L G ++ L F+G +L GLS FG S+ F+
Sbjct: 189 ILILLL--LPGKKGANLILEQAKDTRLPE-IFIGTVLVIVCSAAGLSHFFGFSMSLGAFI 245
Query: 181 MGIFLSK--ISVSYRKFFNLLSKILMGVFGLYI 211
+G+ +SK ++ ++ F L + + +F + I
Sbjct: 246 VGMAISKSRYKINVQEEFAQLKNLFLALFFITI 278
>ref|NP_224120.1| putative [Helicobacter pylori J99]
Length = 220
Score = 23.9 bits (50), Expect = 4.3
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 69 AIAASLGHSLSVSMGFRGVLFIS--MGIILICLALLGARMEKLSFQIPFISFLMKKTLQS 126
AIA+ LGH S + F G +S MG +++ + + + + F + K
Sbjct: 101 AIASILGHCYSPFLNFNGGKGVSTIMGSVVLLIPI----ESLIGLTVWFFVGKVLKISSL 156
Query: 127 QNILGLYFLGVLNGFLPCMMV 147
+ILG+ VL F+P M +
Sbjct: 157 ASILGVGTATVLIFFVPYMHI 177
>ref|NP_223813.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN [Helicobacter pylori
J99]
Length = 217
Score = 23.9 bits (50), Expect = 4.3
Identities = 13/39 (33%), Positives = 20/39 (50%), Gaps = 4/39 (10%)
Query: 175 SMPLFLMGIFLSKISVSYRKFFNLLSKILMGVFGLYILY 213
S+P F G+ L+ Y FF +L +L+G +LY
Sbjct: 11 SIPAFFKGLKLTL----YISFFGILLSLLVGFLCAIVLY 45
>ref|NP_223751.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 220
Score = 23.5 bits (49), Expect = 5.6
Identities = 16/48 (33%), Positives = 24/48 (49%), Gaps = 3/48 (6%)
Query: 166 LGLSFGLGTSMPLFLMGIFLSKISVSYRKFFNLLSKILMGV---FGLY 210
LGL FGLG + ++ G + I Y N L ++L+ V FG +
Sbjct: 129 LGLEFGLGIAGATYMPGGAMHGIIAQYLGKENSLFQLLVKVGFRFGFF 176
>ref|NP_223169.1| putative PHOSPHOLIPASE A1 [Helicobacter pylori J99]
Length = 355
Score = 23.5 bits (49), Expect = 5.6
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 121 KKTLQSQNILGLYFLGVLNGFLPCMMVY 148
KK L + LG YFL + F P Y
Sbjct: 69 KKYLNMMDYLGTYFLPFYHSFTPIFQWY 96
>ref|NP_223005.1| DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN [Helicobacter pylori
J99]
Length = 334
Score = 23.5 bits (49), Expect = 5.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 110 SFQIPFISFLMKKTLQSQNILGLYFLGVLNGFLPCMMVYSF 150
SF++ F+ L + I GL G+L G + V+S+
Sbjct: 243 SFRVIFVHTLRNALIPVTTIAGLMLAGLLGGSMITETVFSW 283
>ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 588
Score = 23.1 bits (48), Expect = 7.3
Identities = 11/42 (26%), Positives = 24/42 (56%)
Query: 196 FNLLSKILMGVFGLYILYMGIMLINHKMPHAMHHQNNTTQHD 237
+ LL + +GV+GL IL + I+ + ++ + + N T+ +
Sbjct: 6 YKLLLFVFIGVWGLLILNLFILSVKNQEYYEKLAERNMTKKE 47
>ref|NP_222858.1| putative [Helicobacter pylori J99]
Length = 197
Score = 23.1 bits (48), Expect = 7.3
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 56 YNVGRISTYMLLGAIAA----SLGHSLSVSMGF---RGVLFISMGIILICLALLGA 104
Y RIS ++ G A + + ++++ F +GV F+ + I ++ L LLGA
Sbjct: 132 YTPQRISAMLINGYSVAVDALAEKYHVNITQNFSAPKGVTFVKVVIYILLLTLLGA 187
>ref|NP_223413.1| putative [Helicobacter pylori J99]
Length = 437
Score = 22.7 bits (47), Expect = 9.5
Identities = 19/80 (23%), Positives = 33/80 (40%), Gaps = 4/80 (5%)
Query: 57 NVGRISTYMLLGAIAASLGHSLSVSMGFR---GVLFISMGIILICLALLGARMEKL-SFQ 112
N+ +Y+LLGA+A ++ S + + G++ +A + + L
Sbjct: 62 NLNIALSYILLGALAVAIAKSNLIKVALNKLIGLMDYKRSTFCFLIAFIACFSQNLVPVH 121
Query: 113 IPFISFLMKKTLQSQNILGL 132
I FI L+ L N L L
Sbjct: 122 IAFIPILIPPLLHLMNRLEL 141
>ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99]
Length = 642
Score = 22.7 bits (47), Expect = 9.5
Identities = 15/47 (31%), Positives = 25/47 (52%), Gaps = 4/47 (8%)
Query: 60 RISTYMLLGAIAASLGHSLSVSMGFRGVLF--ISMGIILICLALLGA 104
R+ T ++G ++ S L + + F G F S G +L C+ +LGA
Sbjct: 357 RLITLFVIGFMSCSA--RLPIYVLFVGSFFPSSSAGFVLFCIYILGA 401
>ref|NP_223138.1| putative [Helicobacter pylori J99]
Length = 495
Score = 22.7 bits (47), Expect = 9.5
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 100 ALLGARMEKLSFQIPFISFLMKKTLQSQNILGLYFLGVLNGFLPCMMVYSFLASVILSHS 159
A LGA ++ P F K L++ +FL + P + V + +H
Sbjct: 370 AFLGAEFSRIK---PSDHFFNKIHLKAP-----HFLESFQNYAPLLEVNEVSGLLQCAHL 421
Query: 160 AFMGAMLGLSFGLGTSMPLF 179
++G LG F + S+ LF
Sbjct: 422 RYLGIDLGADFLIVHSLGLF 441
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 22.7 bits (47), Expect = 9.5
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 172 LGTSMPLFLMGIFLSK--ISVSYRKFFNLLSKILMGVFGLYILYMGIMLINH 221
LG LFL L++ I S R F + +G FGLY+L M +++I++
Sbjct: 84 LGILSLLFLQSSLLNQGEIGNSARLFLHPF----IGDFGLYVLIMLMVVISY 131
>ref|NP_223013.1| putative [Helicobacter pylori J99]
Length = 134
Score = 22.7 bits (47), Expect = 9.5
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 179 FLMGIFLSKISVSYRKFFN 197
FL+G+F+S +S + +F N
Sbjct: 111 FLIGVFVSSLSSALLRFLN 129
>ref|NP_222896.1| putative [Helicobacter pylori J99]
Length = 177
Score = 22.7 bits (47), Expect = 9.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 172 LGTSMPLFLMGIFLSKISVSYRKFFNLLSKI 202
LG LF+ G+ L + SY F + L K+
Sbjct: 59 LGLVDLLFMAGLVLMVLLASYESFVSKLDKV 89
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.333 0.143 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 239,869
Number of Sequences: 1491
Number of extensions: 10782
Number of successful extensions: 87
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 38
length of query: 246
length of database: 494,079
effective HSP length: 75
effective length of query: 171
effective length of database: 382,254
effective search space: 65365434
effective search space used: 65365434
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 47 (22.7 bits)