BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645484|ref|NP_207659.1| deoxyuridine
5'-triphosphate nucleotidohydrolase (dut) [Helicobacter pylori 26695]
         (145 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223517.1|  DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYD...   284  8e-79
ref|NP_224071.1|  DNA POLYMERASE III, ALPHA CHAIN [Helicobac...    25  0.86
ref|NP_223711.1|  PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ...    25  0.86
ref|NP_224182.1|  PENICILLIN-BINDING PROTEIN [Helicobacter p...    25  1.1
ref|NP_224120.1|  putative [Helicobacter pylori J99]               23  2.5
ref|NP_224035.1|  ISOLEUCYL-TRNA SYNTHETASE [Helicobacter py...    23  2.5
ref|NP_223612.1|  GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helico...    23  2.5
ref|NP_223607.1|  putative PROLIPOPROTEIN DIACYLGLYCERYL TRA...    22  9.5
ref|NP_223531.1|  putative [Helicobacter pylori J99]               22  9.5

>ref|NP_223517.1| DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE [Helicobacter
           pylori J99]
          Length = 145

 Score =  284 bits (726), Expect = 8e-79
 Identities = 142/145 (97%), Positives = 145/145 (99%)

Query: 1   MKIKIQKIHPNALIPKYQTDGSSGFDLHAVEEVMIKPHSVGLVKIGICLSLEVGYELQVR 60
           MKIKIQKIHPNALIPKYQT+GSSGFDLHAVEEV+IKPHSVGLV+IGICLSLEVGYELQVR
Sbjct: 1   MKIKIQKIHPNALIPKYQTEGSSGFDLHAVEEVVIKPHSVGLVRIGICLSLEVGYELQVR 60

Query: 61  TRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSDKDFKVQVGDRIAQGVVQKTYKAE 120
           TRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSDKDFKVQVGDRIAQGVVQKTYKAE
Sbjct: 61  TRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSDKDFKVQVGDRIAQGVVQKTYKAE 120

Query: 121 FIECEQLDETSRGSGGFGSTGVSKA 145
           FIECEQLDETSRGSGGFGSTGVSKA
Sbjct: 121 FIECEQLDETSRGSGGFGSTGVSKA 145



>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
          Length = 1211

 Score = 25.0 bits (53), Expect = 0.86
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 30  VEEVMIKPHSVGLVKIGICLSLEVGYEL 57
           + + +++ HS G++    CL  EV Y L
Sbjct: 121 INKKLLREHSKGIIASSACLQGEVNYHL 148



>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
           J99]
          Length = 619

 Score = 25.0 bits (53), Expect = 0.86
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 4   KIQKIHPNALIPKYQTDGSSGFDLHAVEEVMIKPHSVGLVKIGICLSLEVGYELQVRTRS 63
           ++QK HP +L+      G +   +HA+ + + +  S  L+   I L+ ++   L+   + 
Sbjct: 121 ELQK-HPASLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIALTPQMQQRLKKVFKE 179

Query: 64  GLALNHQVMVLNSPGT-VDNDYRGEIKVILANLS 96
            L L H  +  N     ++  Y  EIK+++   S
Sbjct: 180 NLGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRS 213



>ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
          Length = 613

 Score = 24.6 bits (52), Expect = 1.1
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 30  VEEVMIKPHSVGLVKIGICLSLE------VGYELQVRTRSGLAL 67
           VE+V+I+  +VG++KI   L+ E      +GY    +T   L+L
Sbjct: 375 VEDVLIQSSNVGMIKISKSLNPEDFYNGLLGYGFSQKTGIDLSL 418



>ref|NP_224120.1| putative [Helicobacter pylori J99]
          Length = 220

 Score = 23.5 bits (49), Expect = 2.5
 Identities = 10/19 (52%), Positives = 13/19 (67%)

Query: 127 LDETSRGSGGFGSTGVSKA 145
           +D T  GSGG G+T V +A
Sbjct: 38  MDITKIGSGGIGATNVLRA 56



>ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
          Length = 920

 Score = 23.5 bits (49), Expect = 2.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 84  YRGEIKVILANLSDKDFK 101
           +R  +K +LAN SD D K
Sbjct: 663 FRNTLKFLLANFSDMDLK 680



>ref|NP_223612.1| GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helicobacter pylori J99]
          Length = 298

 Score = 23.5 bits (49), Expect = 2.5
 Identities = 11/40 (27%), Positives = 20/40 (49%)

Query: 62  RSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSDKDFK 101
           R G     QV++  SP  +   Y   ++V+  NL++ D +
Sbjct: 71  RLGSYYQFQVVIKPSPSNIQELYLKSLEVLGINLNEHDIR 110



>ref|NP_223607.1| putative PROLIPOPROTEIN DIACYLGLYCERYL TRANSFERASE [Helicobacter
          pylori J99]
          Length = 283

 Score = 21.6 bits (44), Expect = 9.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 44 KIGICLSLEVGYELQVRTRSGLALNHQVMVLN 75
          ++GI L   +GY L     S   L H   + N
Sbjct: 67 ELGIVLGARIGYVLIYEPNSSYYLTHFWQIFN 98



>ref|NP_223531.1| putative [Helicobacter pylori J99]
          Length = 155

 Score = 21.6 bits (44), Expect = 9.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 74  LNSPGTVDNDYRGEIKVILANLS 96
           L +  T+ NDYR  I   ++NL+
Sbjct: 93  LETIATLSNDYRDGINYSISNLN 115



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.316    0.136    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,092
Number of Sequences: 1491
Number of extensions: 5626
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 9
length of query: 145
length of database: 494,079
effective HSP length: 70
effective length of query: 75
effective length of database: 389,709
effective search space: 29228175
effective search space used: 29228175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 44 (21.6 bits)