BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645487|ref|NP_207662.1| hypothetical protein
[Helicobacter pylori 26695]
(153 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223520.1| putative [Helicobacter pylori J99] 273 2e-75
ref|NP_223025.1| putative [Helicobacter pylori J99] 35 7e-04
ref|NP_223830.1| putative [Helicobacter pylori J99] 32 0.006
ref|NP_222774.1| putative [Helicobacter pylori J99] 32 0.006
ref|NP_222831.1| putative [Helicobacter pylori J99] 30 0.023
ref|NP_223180.1| putative [Helicobacter pylori J99] 30 0.038
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 30 0.038
ref|NP_222990.1| putative [Helicobacter pylori J99] 30 0.038
ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 29 0.050
ref|NP_223787.1| putative [Helicobacter pylori J99] 29 0.050
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 29 0.050
ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Hel... 29 0.050
ref|NP_224096.1| putative [Helicobacter pylori J99] 28 0.15
ref|NP_224090.1| putative [Helicobacter pylori J99] 28 0.15
ref|NP_223610.1| putative [Helicobacter pylori J99] 28 0.15
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 27 0.19
ref|NP_223773.1| putative [Helicobacter pylori J99] 27 0.19
ref|NP_223656.1| putative [Helicobacter pylori J99] 27 0.19
ref|NP_223467.1| putative [Helicobacter pylori J99] 27 0.19
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 27 0.19
ref|NP_223889.1| putative [Helicobacter pylori J99] 27 0.25
ref|NP_223783.1| putative [Helicobacter pylori J99] 27 0.25
ref|NP_223600.1| putative [Helicobacter pylori J99] 27 0.25
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 27 0.25
ref|NP_223788.1| putative [Helicobacter pylori J99] 26 0.56
ref|NP_222772.1| putative [Helicobacter pylori J99] 26 0.56
ref|NP_223645.1| putative [Helicobacter pylori J99] 25 0.73
ref|NP_223038.1| putative [Helicobacter pylori J99] 25 0.73
ref|NP_222961.1| putative [Helicobacter pylori J99] 25 0.73
ref|NP_223990.1| putative [Helicobacter pylori J99] 25 0.95
ref|NP_223695.1| PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN [... 25 0.95
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 25 0.95
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 25 0.95
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 25 1.2
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 24 1.6
ref|NP_223618.1| putative [Helicobacter pylori J99] 24 1.6
ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN... 24 1.6
ref|NP_223058.1| putative hemolysin [Helicobacter pylori J99] 24 1.6
ref|NP_222975.1| putative [Helicobacter pylori J99] 24 1.6
ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobact... 24 1.6
ref|NP_222746.1| putative [Helicobacter pylori J99] 24 2.1
ref|NP_222744.1| CITRATE SYNTHASE [Helicobacter pylori J99] 24 2.1
ref|NP_223406.1| putative FLAGELLIN PROTEIN [Helicobacter p... 23 2.8
ref|NP_223007.1| DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING PRO... 23 2.8
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 23 3.6
ref|NP_223949.1| 50S RIBOSOMAL PROTEIN L29 [Helicobacter py... 23 3.6
ref|NP_223650.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223226.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [H... 23 4.7
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 6.1
ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE ... 22 6.1
ref|NP_224199.1| putative [Helicobacter pylori J99] 22 8.0
ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobact... 22 8.0
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 273 bits (698), Expect = 2e-75
Identities = 139/153 (90%), Positives = 146/153 (94%)
Query: 1 MQEELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLN 60
MQ+ELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKS LKGLKQEI QKKLEKEN R N
Sbjct: 1 MQDELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSVLKGLKQEICQKKLEKENFRSN 60
Query: 61 KETQNTQEDVIFPKALEEVEIYTKDNQVIVAKPSKRVFDEGIYLQYRSVLRENRLLKNHL 120
KETQNT+EDVIFPKALEEVE+Y KDNQVI+AKP KR+F+EG+YLQYRSVLRENRLLKNHL
Sbjct: 61 KETQNTEEDVIFPKALEEVEVYAKDNQVIMAKPCKRLFNEGLYLQYRSVLRENRLLKNHL 120
Query: 121 SKKDFENSLLKIELRDLHKEIKLYQAQNLLKDK 153
SKKDFENSLLKIELRDLHKEIKLYQ QNLLKDK
Sbjct: 121 SKKDFENSLLKIELRDLHKEIKLYQVQNLLKDK 153
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 35.4 bits (80), Expect = 7e-04
Identities = 29/99 (29%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 2 QEELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLK--QEIYQKKLEKENSRL 59
QEEL ++E ++ +E +K+ E+K+ ++ + + + L+ QE+ ++ E N +
Sbjct: 235 QEELETPKEETQE-QEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQE 293
Query: 60 NK-ETQNTQEDVIFPKALE--EVEIYTKDNQVIVAKPSK 95
NK ETQ TQE+ P+ +E E+EI ++ VA+ ++
Sbjct: 294 NKKETQETQENTETPQDIETQELEIPKEEETQEVAEKTQ 332
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 32.3 bits (72), Expect = 0.006
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 2 QEELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLNK 61
++E+ Q+E E+ R+ K +EL+Q ++ ++K K E ++K E+E + +
Sbjct: 100 KKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQ-----KTEQEKQKTEQEKQKTEQ 154
Query: 62 ETQNTQED 69
E Q T+++
Sbjct: 155 EKQKTEQE 162
Score = 27.7 bits (60), Expect = 0.15
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 2 QEELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSALKG---LKQEIYQKKLEKENSR 58
++E +QE + T + +K E KQ E ++K S ++ +K E Q+K E+E +
Sbjct: 132 EQEKQKTEQEKQKTEQEKQKTEQE-KQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQK 190
Query: 59 LNKETQNTQEDVI 71
N NTQ+D++
Sbjct: 191 TN----NTQKDLV 199
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 32.3 bits (72), Expect = 0.006
Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 24/164 (14%)
Query: 1 MQEELNAYQQEIEDT-------REVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLE 53
++EEL A E+ED RE L ELK + LR+K K I + KL
Sbjct: 14 IREELEARISELEDENTELLREREYLAAETSELKDANDQLRQKND-----KLFITKDKLT 68
Query: 54 KENSRLNKETQNTQEDVIFPKALEEV--EIYTKDNQVIVAKPSKRVFDEGIYLQYRSVL- 110
KEN+ L E ++ + LE +++ +N++ K + + + + +L
Sbjct: 69 KENTELFAENESLSVKI---SGLEHSNDQLWQNNNKLTKEKAELKTEKDILAKENTRLLA 125
Query: 111 ------RENRLLKNHLSKKDFENSLLKIELRDLHKEIKLYQAQN 148
E R L + EN+ L ++ +L KE K +N
Sbjct: 126 ARDRLTEEKRELTTEKERLKRENTELTHKITELTKENKALTTEN 169
Score = 30.4 bits (67), Expect = 0.023
Identities = 27/131 (20%), Positives = 58/131 (43%), Gaps = 1/131 (0%)
Query: 19 LKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLNKETQNTQEDVIFPKALEE 78
L K + ELK ++IL K+ + L + + ++K E + + +NT+ + +E
Sbjct: 102 LTKEKAELKTEKDILAKENTRLLAARDRLTEEKRELTTEKERLKRENTELTHKITELTKE 161
Query: 79 VEIYTKDNQVIVAKPSKRVFDEGIYLQYRSVLRE-NRLLKNHLSKKDFENSLLKIELRDL 137
+ T +N + + + + Q R+ L++ + L+ + + EN L +L+ L
Sbjct: 162 NKALTTENDKLNHQVTALTNERDSLEQERARLQDAHGFLEKRCTNLEKENQRLTDKLKQL 221
Query: 138 HKEIKLYQAQN 148
K + N
Sbjct: 222 ESAQKSLENTN 232
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 30.4 bits (67), Expect = 0.023
Identities = 23/80 (28%), Positives = 38/80 (46%), Gaps = 12/80 (15%)
Query: 4 ELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSALKG--LKQEIYQKKLEKENSRLNK 61
+L +Q+ E R+ K +EL+Q ++ K L +K E ++K E+E + NK
Sbjct: 142 KLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANK 201
Query: 62 ----------ETQNTQEDVI 71
+T NTQ D+I
Sbjct: 202 SEIELEQQKQKTINTQRDLI 221
Score = 26.2 bits (56), Expect = 0.43
Identities = 12/43 (27%), Positives = 24/43 (54%)
Query: 27 KQVQEILRKKKSALKGLKQEIYQKKLEKENSRLNKETQNTQED 69
KQ++ KK++ G+K E ++K E+E + NK +++
Sbjct: 125 KQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQE 167
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 29.6 bits (65), Expect = 0.038
Identities = 32/124 (25%), Positives = 55/124 (43%), Gaps = 20/124 (16%)
Query: 24 LELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLNKETQNTQEDVIFPKALE-----E 78
LE + ++E KK+ K K+E + KL+KE K+ + P + E
Sbjct: 548 LEAETLEEYKPKKEKKEKKEKKEKEEYKLKKE-----KKVYDLSSYKFSPHSRELFDILR 602
Query: 79 VEIYTKDNQVIVAKPSKRVFDEGIYLQYRSVLRENRLLKNHLSKKDFENSLLKIELRDLH 138
EI T D +V SK + + + + ++ +N++LK + LK+E +L
Sbjct: 603 KEIKTLDERVTENFNSKYIAYKFFKINFVDIVVQNKVLKLY----------LKMEFNELQ 652
Query: 139 KEIK 142
EIK
Sbjct: 653 DEIK 656
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 29.6 bits (65), Expect = 0.038
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 4 ELNAYQQEIEDTREVLKKIRLELK-----QVQEILRKKKSALKGLKQEIYQKKLEKENSR 58
EL Q+E+++ E K I LELK ++ + K + G+K++I + K +
Sbjct: 13 ELGKTQKELKNVIEQAKDIGLELKTNFKMTPEQAGKLYKYIVDGIKEQIQANQPTKNPKQ 72
Query: 59 LNKETQNTQEDVIFPKALEEVEIYTKDNQVIVAKPSKR 96
NK+ NT PK L + T + A+P +
Sbjct: 73 DNKDDLNT---AATPKPLAKKASKTPKKEETKAQPKPK 107
>ref|NP_222990.1| putative [Helicobacter pylori J99]
Length = 523
Score = 29.6 bits (65), Expect = 0.038
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 84 KDNQVIVAKPSKRVFDEGIYLQYRSVLRENRLLKNHLSKKDFENSLLKIELRDLHKEIKL 143
KD+ V + K IY + SV +E R LKN SK + S L+ L+ L + K+
Sbjct: 39 KDDNVWLKKFENYKIYNQIYTEKESVRQELRRLKNKKSKDLLKISTLEHTLKALESQQKM 98
Query: 144 YQA 146
+++
Sbjct: 99 FES 101
>ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 452
Score = 29.3 bits (64), Expect = 0.050
Identities = 24/78 (30%), Positives = 41/78 (51%), Gaps = 12/78 (15%)
Query: 73 PKALEEVEIYTKDNQVIVAKPSKRVFDEGIYLQYRSVLRENRLLKNHLSKKDFENSLLKI 132
PK L+ V DN VI + +K+VF +Y Y+ + K L K+D ++S L++
Sbjct: 88 PKELKAV----LDNYVIGQEQAKKVFSVAVYNHYKRL-----SFKEKLKKQDNQDSDLEL 138
Query: 133 ELRDLHKEIKLYQAQNLL 150
E + E++L ++ LL
Sbjct: 139 EHLE---EVELSKSNILL 153
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 29.3 bits (64), Expect = 0.050
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 21/107 (19%)
Query: 4 ELNAYQQEIEDTREVLKKIRLEL----KQVQEILRKKKSA--------LKGLKQEI--YQ 49
+L++ + EI+ ++++KK ++ + +++I ++KKS + K +I Y
Sbjct: 382 KLDSNKNEIDAIKDLIKKANEQITNHNETIKDIEKQKKSCKEQTWKFLINEFKSDIQEYN 441
Query: 50 KK---LEKENSRLNKETQNTQEDVIFPKALEEVEIYTKDNQVIVAKP 93
KK LEK + L KE QE V K LE EI + ++ KP
Sbjct: 442 KKYCGLEKGINNLEKEISENQEKV---KKLEN-EIKELEKNMVSIKP 484
Score = 26.9 bits (58), Expect = 0.25
Identities = 34/152 (22%), Positives = 67/152 (43%), Gaps = 25/152 (16%)
Query: 1 MQEELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLN 60
+++ +N ++EI + +E +KK+ E+K+ L K ++K + EI L K N
Sbjct: 447 LEKGINNLEKEISENQEKVKKLENEIKE----LEKNMVSIKPIVNEI--NTLLKGYGFTN 500
Query: 61 KETQNTQEDVIFPKALEEVEIYTKDNQVIVAKPSKRVFDEGIYLQY----RSVLRENRLL 116
T+++ + I +D Q++ S+ +L Y + L+EN +
Sbjct: 501 FSLACTEDEKFY-------RIQREDGQLVGETLSEGEVTFITFLYYYHLAKGSLKENDIS 553
Query: 117 KNHLSKKDFENS--------LLKIELRDLHKE 140
KN + D S ++ + ++DL KE
Sbjct: 554 KNKVLVIDDPISSLDSNILFMVSVLVKDLMKE 585
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 29.3 bits (64), Expect = 0.050
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 9 QQEIEDTREVLKKIRLELKQVQEILRKKKSALK-GLKQEIYQ-KKLEKENSRLNKETQNT 66
++EI+D L KIR LK +Q + +K+ + QE + KL K++ +++
Sbjct: 150 EEEIKDINAQLSKIRDSLKLIQNMFWDEKNPNSVNIPQEFAEIYKLAKQSG-----MKSS 204
Query: 67 QEDVIFPKALEEVEIYTKDNQVIVAKPSKRVFDEGIYLQYRSV-LRENRLL 116
D I +LE + + ++N V + + + V + I + + LR+ R+L
Sbjct: 205 HLDEIMQLSLELMPLRMRENSVTIKRYFREVLRKIILCRPEDLNLRQKRIL 255
>ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Helicobacter pylori J99]
Length = 363
Score = 29.3 bits (64), Expect = 0.050
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 34 RKKKSALKGLKQEIYQKKLEKENSRLNKETQN 65
+ K SALK LK ++Y+ +LEK+ S E ++
Sbjct: 281 KNKASALKMLKSKLYELELEKQQSSAKNEEKS 312
>ref|NP_224096.1| putative [Helicobacter pylori J99]
Length = 190
Score = 27.7 bits (60), Expect = 0.15
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 103 YLQYRSVLRENRLLKNHLSKKDFENSLLKIELRDLHKEIKLYQAQN 148
Y + ++ RE + LSKK+F N +++E+ +++ + QN
Sbjct: 142 YKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRDDLQAFLQQN 187
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 27.7 bits (60), Expect = 0.15
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 14 DTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLNKETQNTQEDVI 71
DT++ L+ L K+ + + K+ALKGLK E+ +K+L+K S + +N+ + +
Sbjct: 444 DTQKDLEGASLAFKRGRLMAIADKNALKGLK-ELEKKRLKKALSFFDLSLKNSPNNAL 500
Score = 22.7 bits (47), Expect = 4.7
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 38 SALKGLKQEIYQKKLEKENSRLNKETQNTQEDVIFPKALEEVEIYTKDNQVIVAKPSKRV 97
S L G K+E Q L+ + N ET N + A E +I D ++ K S +
Sbjct: 80 SLLLGHKKENKQTSLQTNTATTNNETPNDTNN-----AEAEGQIENLDLPDLIGKDSLKR 134
Query: 98 FDE 100
DE
Sbjct: 135 NDE 137
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 27.7 bits (60), Expect = 0.15
Identities = 14/79 (17%), Positives = 39/79 (48%)
Query: 1 MQEELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLN 60
++EE A + ++ + L+ ++ +Q+ + + KS + I + ++ +++ N
Sbjct: 49 LEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQAN 108
Query: 61 KETQNTQEDVIFPKALEEV 79
+E +N Q ++ +EV
Sbjct: 109 REIENLQNEIKHKSEKQEV 127
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 27.3 bits (59), Expect = 0.19
Identities = 30/131 (22%), Positives = 63/131 (47%), Gaps = 16/131 (12%)
Query: 32 ILRKKKSALKGLKQEIYQKKLEKENSRLNKETQNTQEDVIFPKALEEVEIYTKDNQVIVA 91
+ ++ +S L EI K+LE+ ++L ++ + K L+E+E + ++I++
Sbjct: 47 LAKRLRSFLHSKSLEI-SKRLEEIQAQLKVSKEHKK------KLLKELEQAKEKAELIIS 99
Query: 92 KPSKRVFDEGIYLQYRSVLRENRLLKNHLSKKDFENSLLKIEL-----RDLHKEIKL-YQ 145
+K + + ++ + L+KN + D E +K EL +DL + K+ +
Sbjct: 100 DANKEAYTITQKYELQTKMDVENLIKNSKALMDLEVKKIKRELVESVFKDLRESKKVSFN 159
Query: 146 AQ---NLLKDK 153
AQ N+LK +
Sbjct: 160 AQDCVNILKQR 170
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 27.3 bits (59), Expect = 0.19
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 6 NAYQQEIEDTREVLKKIRLE--LKQVQEILRKKKSALKGLKQEIYQ--KKLEKENSRLNK 61
NA + E ++ +E +++R + LKQ QE + LKGL+Q + Q +KLE ++
Sbjct: 107 NAQKDEQKNEQEEQRRLREQQRLKQNQE----NQEMLKGLQQNLNQFTQKLESVKNK-TL 161
Query: 62 ETQNTQEDVIFPKALEE 78
+ Q ++D + KA +E
Sbjct: 162 DLQIPKQDGVDEKAYQE 178
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 27.3 bits (59), Expect = 0.19
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 9 QQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLNKETQNTQE 68
+++ ED E+ KKI+ E+K+ ++LR+K A + +K+ + +K+ + + +
Sbjct: 101 KEDTEDKEELAKKIK-EIKEKAKVLRQKFMAFE-MKEHSKEFPNKKQLQTMLENAFDNGA 158
Query: 69 DVIFPKALEEVEIYTKDNQVIVAKPSKRVFDEGIYLQY--RSVLRENRLLKNHLSKKDFE 126
+ E +++N A K DEG L + RS +R+ KKDFE
Sbjct: 159 ESFIDDWHERFGGISREN-TYKALGIKEYSDEGKILAFGERSYIRQ--------YKKDFE 209
Query: 127 NS 128
S
Sbjct: 210 ES 211
>ref|NP_223467.1| putative [Helicobacter pylori J99]
Length = 205
Score = 27.3 bits (59), Expect = 0.19
Identities = 16/48 (33%), Positives = 27/48 (55%), Gaps = 3/48 (6%)
Query: 97 VFDEGIYLQYRSVLRENRLLKNHLSKKDFENSLLKIELRDLHKEIKLY 144
V G ++ YRS+ R + N +KD + SLL+ + D K+I++Y
Sbjct: 137 VIFSGDFIFYRSIGRYDFPYSN---EKDMKESLLRFQNLDFPKDIEIY 181
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 27.3 bits (59), Expect = 0.19
Identities = 31/132 (23%), Positives = 57/132 (42%), Gaps = 32/132 (24%)
Query: 51 KLEKENSRLNKETQNTQEDVIFPKALEEVEIYTKDNQVIVAKP------SKRVFDEGIYL 104
++EK+N LN + + PK ++ +E Y +Q + +P S + E I+
Sbjct: 355 EIEKKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQQKIMRPKVCPICSHELLCEEIFT 414
Query: 105 QYRSVLRENRLLKN--HLSKKD---------------FENSLL-------KIELRDLHK- 139
+++ RL ++ H + KD FE L+ ++L DL +
Sbjct: 415 YCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRL 474
Query: 140 -EIKLYQAQNLL 150
+ K+ +AQNLL
Sbjct: 475 DKFKIKKAQNLL 486
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 26.9 bits (58), Expect = 0.25
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 14 DTREVLKKIRLELKQVQEILRKKKSALKG-LKQEIYQKKLEKENSRLNKETQNTQEDV 70
DT ++I+ E+KQ EI ++ K +K +KQEI Q+ ++E + NK QN+ V
Sbjct: 86 DTATQKQEIKQEIKQ--EIKQEIKQEIKQEIKQEIKQET-KQEQEKENKPKQNSVSPV 140
Score = 24.3 bits (51), Expect = 1.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 28 QVQEILRKKKSALKGLKQEIYQKKLEKENSRLNKETQNTQEDVIFPK 74
Q QEI K+ + +KQEI Q+ ++ + +ET+ QE PK
Sbjct: 90 QKQEI---KQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPK 133
>ref|NP_223783.1| putative [Helicobacter pylori J99]
Length = 290
Score = 26.9 bits (58), Expect = 0.25
Identities = 27/154 (17%), Positives = 64/154 (41%), Gaps = 21/154 (13%)
Query: 2 QEELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQE---------IYQKKL 52
+E L +YQ E+ +++KK R + + +L L +E + +
Sbjct: 138 KELLESYQMTQEELSKIVKKSRAHVANIMRLLTLSSKVQNALLEEKITSGHAKVLVGLEE 197
Query: 53 EKENSRLN---------KETQNTQEDVIFPKALEEVEIYTKDNQVIVAKPSKRVFDEGIY 103
EK+ LN ++T++ D + + K Q ++A+ F++ ++
Sbjct: 198 EKQELILNSIIGQKLSVRQTEDLARDFKINANFDNKKHGFKQTQTLIAEDELERFNQSLW 257
Query: 104 LQYRSVLRENRLLKNHLSKKDFENSLLKIELRDL 137
+Y+ + L + + ++NSLL+ ++ +
Sbjct: 258 DRYK---LKAALKGKKIVLRCYKNSLLEAFMKKM 288
>ref|NP_223600.1| putative [Helicobacter pylori J99]
Length = 337
Score = 26.9 bits (58), Expect = 0.25
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 35/162 (21%)
Query: 11 EIEDTREVLK--KIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLNKETQNTQE 68
++++ EVL +I LEL++ I + A KG K+E+ K + L+KE
Sbjct: 172 DLKNAFEVLTNAQIPLELRRYAFI----EIAQKGSKKEVL-KAVNAMQEDLDKECVKAFL 226
Query: 69 DVIFPKALEEVEI----------YTKDNQVIVAKPSKRVFDEGIYLQYRSVLRE------ 112
F K+L + Y KD+ + +A+ +++ + Q+ +L +
Sbjct: 227 KAFFEKSLNTDTLKISELCKKVGYDKDDYLKLAQKAQKFLVPDQWFQFFEILSQEDDKAQ 286
Query: 113 ------------NRLLKNHLSKKDFENSLLKIELRDLHKEIK 142
N L K HL+ FE +L DL +E K
Sbjct: 287 KAFLFVLLELEMNDLAKEHLAVLSFEEYMLLNAYMDLKQEHK 328
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 26.9 bits (58), Expect = 0.25
Identities = 24/84 (28%), Positives = 44/84 (51%), Gaps = 7/84 (8%)
Query: 17 EVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLNKETQNTQEDVIFPKAL 76
+ LKK+ E + ++++ +KK K ++Q++ QKK+E E + KE Q + PK
Sbjct: 133 KALKKV--EKVEEKKVVEEKKEEKKVVEQKVEQKKIE-EKKPVKKEFDPNQLSFL-PK-- 186
Query: 77 EEVEIYTKDNQVIVAKPSKRVFDE 100
EV ++N + ++R DE
Sbjct: 187 -EVAPPRQENNKGLDNQTRRDIDE 209
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 25.8 bits (55), Expect = 0.56
Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 17 EVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKEN-SRLNKETQNTQEDVIFPKA 75
E K LE ++ E+L+K+ QE++QK+ E E R N E ++ + K
Sbjct: 101 EARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKL 160
Query: 76 LEEVEI-YTKDNQVIVAKPSKRVFDEGIYLQYRSVLRENRLLKNHLSKKDFENSLLKIEL 134
E++E+ K + + K + + L+ +N K LS + F+ + ++ +
Sbjct: 161 NEKLELEREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQELAI 220
Query: 135 RDLHKE 140
+ ++
Sbjct: 221 EEFLRQ 226
Score = 23.5 bits (49), Expect = 2.8
Identities = 13/67 (19%), Positives = 31/67 (45%)
Query: 3 EELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLNKE 62
+E + QE+ +++++ E + + L+ + K E+ ++K+EK N+
Sbjct: 122 DEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLELEREKIEKALHEKNEL 181
Query: 63 TQNTQED 69
QE+
Sbjct: 182 KFKQQEE 188
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 25.8 bits (55), Expect = 0.56
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 2 QEELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLNK 61
+E L + E+ + +VL + L +E L K+K+ + E+ K EN + +
Sbjct: 102 RENLTKEKTELTEKNKVLTTEKERLATEKENLTKEKTESQKQVNELKNSKQVLENEKADL 161
Query: 62 ETQNTQ 67
+NT+
Sbjct: 162 TNENTK 167
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 25.4 bits (54), Expect = 0.73
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 30 QEILRKKKSALKGLKQEIYQKKLEKENSRLNKETQNTQEDVIFPKALEEVEIYTKD---N 86
QE ++++ + QE Q E+ + Q+TQE+ P +++ T N
Sbjct: 371 QEQTTQEQTTQEQTTQE--QTTQEQTTQEQTTQEQDTQENA--PTTIKQETPITPAIPLN 426
Query: 87 QVIVAKPSKRVFDEGIYLQYRSVLRENRLLKNHLSKKD 124
I KPS+ V +G +Y++ ++ LLK +K++
Sbjct: 427 PKIDFKPSEEVLIKGAKTRYKANIKAIELLKELQAKQE 464
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 25.4 bits (54), Expect = 0.73
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 27 KQVQEILRKKKSALKGLKQEIYQKKLEKENSRL---NKETQNTQEDVIFPKALEEVEI-Y 82
K + + ++K ++ +I +K+L KEN +L N+E + + LE++
Sbjct: 28 KTKRALFKEKSQKIREQAVKIVEKRLIKENMQLSDFNEEELKIMFEAEEKRLLEQIHAKE 87
Query: 83 TKDNQVIVAKPSKRVFDEG 101
K+ Q K K V+++G
Sbjct: 88 LKEKQEKTTKHFKEVWEKG 106
Score = 24.3 bits (51), Expect = 1.6
Identities = 16/74 (21%), Positives = 32/74 (42%), Gaps = 6/74 (8%)
Query: 80 EIYTKDNQVIVAKPSKRVFDEGIYLQYRSVLRENRLLKNHLSKKDFENSLLKIELRDLHK 139
E + K + + + S+++ ++ + + E RL+K ++ DF LKI K
Sbjct: 24 EAFQKTKRALFKEKSQKIREQAVKIV------EKRLIKENMQLSDFNEEELKIMFEAEEK 77
Query: 140 EIKLYQAQNLLKDK 153
+ LK+K
Sbjct: 78 RLLEQIHAKELKEK 91
>ref|NP_222961.1| putative [Helicobacter pylori J99]
Length = 142
Score = 25.4 bits (54), Expect = 0.73
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1 MQEELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQ---EIYQKK 51
++ E+ YQQE E+ + LK + + + L K K L+ KQ EI +KK
Sbjct: 68 LRMEIEYYQQEGENLTKDLKILEKDYLLANQELEKAKIILEKEKQKEKEILEKK 121
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 25.0 bits (53), Expect = 0.95
Identities = 28/108 (25%), Positives = 46/108 (41%), Gaps = 19/108 (17%)
Query: 56 NSRLNKETQNTQEDVIFPKALEEVEIYTKDNQVIVAKPSKRVFD------EGIYLQYRSV 109
N KE N QE K E + I T + A +K +F+ GI +++++
Sbjct: 455 NPIFEKELSNAQEI----KKNENILIITGNPPYSGASENKGLFEWEVKATYGIEPEFQTI 510
Query: 110 LRENR---------LLKNHLSKKDFENSLLKIELRDLHKEIKLYQAQN 148
E LLKN +K+ + EL++LH + KL + +N
Sbjct: 511 EIEKNVKLTDKIQTLLKNVQKQKESGSKNALKELKNLHSKYKLQKEKN 558
Score = 23.1 bits (48), Expect = 3.6
Identities = 14/54 (25%), Positives = 25/54 (45%), Gaps = 1/54 (1%)
Query: 59 LNKETQNTQ-EDVIFPKALEEVEIYTKDNQVIVAKPSKRVFDEGIYLQYRSVLR 111
LN+E+ N E + P E D I+ KPS + ++ +Y+ + + R
Sbjct: 936 LNRESLNHSFEKLKDPTIGESYYKEAHDRNPIIKKPSHKKLEQRLYINHSAYFR 989
>ref|NP_223695.1| PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN [Helicobacter pylori
J99]
Length = 328
Score = 25.0 bits (53), Expect = 0.95
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 3 EELNAYQQEIEDTREVLKKIRLELKQVQEILRKKK 37
+E++ Y+Q E E+ KK +EL +++E L+K+K
Sbjct: 51 KEIHHYKQAFEKAFELKKKAIMEL-ELEERLKKEK 84
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 25.0 bits (53), Expect = 0.95
Identities = 22/102 (21%), Positives = 44/102 (42%), Gaps = 9/102 (8%)
Query: 3 EELNAYQQEIEDTRE--------VLKKIRLELKQVQEILRKKKSALKG-LKQEIYQKKLE 53
E+L EI+ + E +L+ ++L L + + ++ K L + I + +
Sbjct: 569 EKLERNDDEIKPSSEGQITYIENILRDLQLNLSEEFKNYKEDNRVAKAFLDRYIKEHEFF 628
Query: 54 KENSRLNKETQNTQEDVIFPKALEEVEIYTKDNQVIVAKPSK 95
K+N++ + N + PK + EI K + V + K K
Sbjct: 629 KKNNKKASSSNNDENRPATPKQISFAEILAKKHNVKLPKGFK 670
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 25.0 bits (53), Expect = 0.95
Identities = 14/46 (30%), Positives = 23/46 (49%)
Query: 30 QEILRKKKSALKGLKQEIYQKKLEKENSRLNKETQNTQEDVIFPKA 75
++ ++K +K K+ Y K E SR+ +T N Q D I +A
Sbjct: 745 EDEIKKIVDFIKAQKEVEYDKDFLLEESRMPLDTPNYQGDDILERA 790
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 24.6 bits (52), Expect = 1.2
Identities = 33/138 (23%), Positives = 58/138 (41%), Gaps = 30/138 (21%)
Query: 14 DTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKEN--------SRLNKETQN 65
+ R++L+ L+ + + +KK +K L +++ +K L KE+ SR E +
Sbjct: 1083 EARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEK 1142
Query: 66 TQ-EDVIFPKALEEVEIYTKDNQVIVAKPSKRVFDEGIYLQYRSVLRENRLLKNHLSKKD 124
+ E ++ P+A + +E K + + SK KN KK+
Sbjct: 1143 KECEKLLTPEARKLLEESKKSVKAYLDCVSK--------------------AKNEAEKKE 1182
Query: 125 FENSLLKIELRDLHKEIK 142
E LL E R L +E K
Sbjct: 1183 CE-KLLTPEARKLLEEAK 1199
Score = 23.9 bits (50), Expect = 2.1
Identities = 32/149 (21%), Positives = 63/149 (41%), Gaps = 7/149 (4%)
Query: 9 QQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLNKETQNTQE 68
Q+E+++ ++ +K + E ++ + + K A++ LKQ+ + KE
Sbjct: 434 QKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKECLKNIP 493
Query: 69 DVIFPKALEEVEIYTKDNQVIVAKPSKRVFD-EGIYLQYRSVLRENR---LLKNHLSKKD 124
+ + L ++ + + V A+ K + E + L EN+ LKN +K D
Sbjct: 494 QDLQKELLADMSVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLENQALDCLKN--AKTD 551
Query: 125 FE-NSLLKIELRDLHKEIKLYQAQNLLKD 152
E LK +DL +I ++ KD
Sbjct: 552 EERKECLKNLPKDLQSDILAKESLKAYKD 580
Score = 23.1 bits (48), Expect = 3.6
Identities = 16/76 (21%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 14 DTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRL---------NKETQ 64
+ +++L+ L+ + + +KK +K L +++ +K L KE+ R+ N+ +
Sbjct: 937 EAKKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAER 996
Query: 65 NTQEDVIFPKALEEVE 80
E ++ P+A + +E
Sbjct: 997 KECEKLLTPEARKLLE 1012
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 24.3 bits (51), Expect = 1.6
Identities = 15/68 (22%), Positives = 34/68 (49%)
Query: 1 MQEELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLN 60
+ ++ A I+DTRE L ++ + + + + K+ ++L EI ++ E EN++
Sbjct: 137 LAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIAEINKRIKEVENNKSL 196
Query: 61 KETQNTQE 68
K ++
Sbjct: 197 KHANELRD 204
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 24.3 bits (51), Expect = 1.6
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 20/113 (17%)
Query: 19 LKKIRLELKQVQEILRK--------KKSALKGLKQ-----EIYQKKLEKENSRLNKETQN 65
LK+++ Q+Q L+ K+ AL+ +K + +K EK + L +E +
Sbjct: 50 LKRLKFLNSQLQNSLKSVIESFDYSKEKALEEIKALDLGVKDIEKTYEKLRANLEEEYSS 109
Query: 66 TQEDVIFPKALEEVEIYTKDNQVIVAKPSKRVFDEGIYLQYRSVLRENRLLKN 118
+ + K +EEV ++ KP++ F+ I S++++N L+KN
Sbjct: 110 VAVNSVVKKVIEEVRDQKPYLASLINKPNE--FNSEI----ESIMQQN-LIKN 155
>ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN 2 (HAP2) [Helicobacter
pylori J99]
Length = 685
Score = 24.3 bits (51), Expect = 1.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 44 KQEIYQKKLEKENSRLNKETQNTQE 68
K +IY+ L+++ L K+ +N QE
Sbjct: 619 KLKIYEDSLDRDAKSLTKDKENAQE 643
>ref|NP_223058.1| putative hemolysin [Helicobacter pylori J99]
Length = 235
Score = 24.3 bits (51), Expect = 1.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 100 EGIYLQYRSVLRENRLLKNHLSKKDFE 126
+G+ + ++L KNHL KDF+
Sbjct: 184 KGVVMDKEAILNALENFKNHLKTKDFQ 210
>ref|NP_222975.1| putative [Helicobacter pylori J99]
Length = 437
Score = 24.3 bits (51), Expect = 1.6
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 6 NAYQQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLNKETQN 65
N ++ EDT EVL+K+R + + + K+ + LE + RL + QN
Sbjct: 304 NESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERV---PLEISSLRLER-LQN 359
Query: 66 TQEDVIFPKALEEV 79
++++ KA EV
Sbjct: 360 RHKEILEEKAKLEV 373
>ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobacter pylori J99]
Length = 352
Score = 24.3 bits (51), Expect = 1.6
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 34 RKKKSALKGLKQEIYQKKLEKE---NSRLNKE 62
+ K ALK LK +Y+K++E++ N++ KE
Sbjct: 263 KNKDKALKILKARLYEKQIEEQQLANAKDRKE 294
>ref|NP_222746.1| putative [Helicobacter pylori J99]
Length = 175
Score = 23.9 bits (50), Expect = 2.1
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 53 EKENSRLNKETQNTQEDVIF-----PKALEEVEIYTKDN 86
E EN+ NKE + DV F PK + V +Y ++
Sbjct: 46 ENENTPNNKEVKTLARDVYFVQTYDPKDQKSVTVYRNED 84
>ref|NP_222744.1| CITRATE SYNTHASE [Helicobacter pylori J99]
Length = 426
Score = 23.9 bits (50), Expect = 2.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 40 LKGLKQEIYQKKLEKENSRLNKETQNTQEDVIFPKALEEVEIY 82
LKGLK E++QK + K + RL++ +E + + E +Y
Sbjct: 327 LKGLKDELHQKGV-KMDERLSEIAAKVEEIALKDEYFIERNLY 368
>ref|NP_223406.1| putative FLAGELLIN PROTEIN [Helicobacter pylori J99]
Length = 119
Score = 23.5 bits (49), Expect = 2.8
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 48 YQKKLEKENSRLNKETQNTQEDVIFP--KALEEVEIYTKD---NQVIVAKPSKRVFD 99
Y+ KLE + RLN+E + D+ F ++ + + KD ++VI PSK +
Sbjct: 46 YKPKLELLSERLNEEMKRIGTDINFSYNDTIKGLVVSVKDANGDKVIREIPSKEAVE 102
>ref|NP_223007.1| DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN [Helicobacter pylori
J99]
Length = 268
Score = 23.5 bits (49), Expect = 2.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 109 VLRENRLLKNHLSKKDFENSLLKI 132
++ E LL +H SKK+ + +L+I
Sbjct: 112 IIAEPLLLNSHFSKKEIKTKVLEI 135
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 23.1 bits (48), Expect = 3.6
Identities = 16/56 (28%), Positives = 28/56 (49%), Gaps = 9/56 (16%)
Query: 9 QQEIEDTREVLKKIRLE---------LKQVQEILRKKKSALKGLKQEIYQKKLEKE 55
++ I D ++L+K LE LK+++E S ++ Q+IYQ+ L E
Sbjct: 53 KERILDYLKILQKENLESEKEKSQNILKELEEKYHLDPSLVRNNAQKIYQRFLNAE 108
Score = 21.9 bits (45), Expect = 8.0
Identities = 13/51 (25%), Positives = 24/51 (46%)
Query: 14 DTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEKENSRLNKETQ 64
D L+K+R Q+Q I A K +K + ++ L + L K+++
Sbjct: 206 DEEGFLEKLRSLNNQIQSIETASNEAKKAIKCDSFRGFLNSSLTWLEKKSE 256
>ref|NP_223949.1| 50S RIBOSOMAL PROTEIN L29 [Helicobacter pylori J99]
Length = 66
Score = 23.1 bits (48), Expect = 3.6
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 26 LKQVQEILRKKKSALKGLKQEIYQKKLEKEN----SRLNKETQNTQEDVIFPKALE 77
+K+++E+L KK+ L L+ ++ +L N +R N NT + + ++E
Sbjct: 11 IKELEELLHAKKAELFELRVKLKNMQLSNPNEIKKARRNIARINTAINAYYSSSVE 66
>ref|NP_223650.1| putative [Helicobacter pylori J99]
Length = 267
Score = 23.1 bits (48), Expect = 3.6
Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 29 VQEILRKKKSALK-GLKQEIYQKKLEKENSRLN 60
+ +I+ +++AL+ G+ ++ KKLEK++ LN
Sbjct: 206 LNQIMDLEETALELGVMAQLIHKKLEKQSHSLN 238
>ref|NP_223226.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [Helicobacter pylori J99]
Length = 247
Score = 22.7 bits (47), Expect = 4.7
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 102 IYLQYRSVLRENRLLKNHLSKKDFENSLLKIE 133
+++ YRS LKN L +K ++ +++K +
Sbjct: 32 VWINYRSNAEVADALKNGLEEKGYKAAVIKFD 63
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 22.3 bits (46), Expect = 6.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 11 EIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLE 53
E+E E+L+KI+ E ++ S L K E Y +E
Sbjct: 557 ELESYEEILRKIKYEDNDKPLAYEEQYSDLVERKNESYTLNIE 599
Score = 21.9 bits (45), Expect = 8.0
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 102 IYLQYRSVLRENRLLKNHLSKKDFENSLL 130
++L YR+ LL + SK++F N ++
Sbjct: 320 LHLDYRANYLGRMLLNDIFSKENFRNEII 348
>ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
Length = 688
Score = 22.3 bits (46), Expect = 6.1
Identities = 11/35 (31%), Positives = 21/35 (59%)
Query: 10 QEIEDTREVLKKIRLELKQVQEILRKKKSALKGLK 44
+EIE + E +KK + +Q+ +R K AL+ ++
Sbjct: 290 EEIELSLEKVKKTEIRRMIIQDKIRPDKRALEEVR 324
>ref|NP_224199.1| putative [Helicobacter pylori J99]
Length = 254
Score = 21.9 bits (45), Expect = 8.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 119 HLSKKDFENSLLKIELRDLHKEI 141
HL KD+EN L ++ L K +
Sbjct: 8 HLDHKDYENDLDEVLKESLEKGV 30
>ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobacter pylori J99]
Length = 414
Score = 21.9 bits (45), Expect = 8.0
Identities = 19/68 (27%), Positives = 29/68 (41%), Gaps = 7/68 (10%)
Query: 9 QQEIEDTREVLKKIRLELKQVQEILRKKKSALKGLKQEIYQKKLEK--EN-SRLNKETQN 65
Q E+ED EVLK+ L+ +++ + +K KK EN + +K
Sbjct: 26 QSELEDLEEVLKQNALD----NPLIKIENKRIKNFSDRFNTKKSSDHLENCATASKSLFE 81
Query: 66 TQEDVIFP 73
T E I P
Sbjct: 82 TLESQIIP 89
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.132 0.334
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,540
Number of Sequences: 1491
Number of extensions: 8868
Number of successful extensions: 83
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 70
length of query: 153
length of database: 494,079
effective HSP length: 70
effective length of query: 83
effective length of database: 389,709
effective search space: 32345847
effective search space used: 32345847
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)