BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645488|ref|NP_207663.1| hydrogenase
expression/formation protein (hypA) [Helicobacter pylori 26695]
(117 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223521.1| Hydrogenase expression/formation protein [... 235 2e-64
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 25 0.58
ref|NP_223865.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 24 1.3
ref|NP_223112.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobact... 22 3.7
ref|NP_223348.1| putative TYPE II RESTRICTION ENZYME [Helic... 22 6.4
>ref|NP_223521.1| Hydrogenase expression/formation protein [Helicobacter pylori J99]
Length = 117
Score = 235 bits (600), Expect = 2e-64
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MHEYSVVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKD 60
MHEYSVVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKD
Sbjct: 1 MHEYSVVSSLIALCEEHAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKD 60
Query: 61 AILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKNVIITQGNEMRLLSLEMLAE 117
AILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKNVIITQGNEMRLLSLEMLAE
Sbjct: 61 AILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKNVIITQGNEMRLLSLEMLAE 117
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 25.0 bits (53), Expect = 0.58
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 71 ELECKDCSHVFKPNALDYGVCEKC-----HSK 97
+ EC C KP D G CEKC HSK
Sbjct: 1446 DYECL-CGKYKKPRFKDIGTCEKCGVAITHSK 1476
>ref|NP_223865.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 345
Score = 23.9 bits (50), Expect = 1.3
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 16/103 (15%)
Query: 12 ALCEE--HAKKNQAHKIERVVVGIGERSAMDKSLFVSAFETFREESLVCKDAILDIVDEK 69
ALC + HA IE + +G G + + F FE+ + + + D + +
Sbjct: 35 ALCLDLKHALSQTDEPIESIFIGGGTPNTLSVKAFERIFESIHQHASLSMDCEI-TTEAN 93
Query: 70 VELECKDCSHVFKP---NALDYGV----------CEKCHSKNV 99
EL K K N L GV E+ HSKN+
Sbjct: 94 PELISKAWCQGLKDLGINRLSLGVQSFREDKLLFLERQHSKNI 136
>ref|NP_223112.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 354
Score = 22.3 bits (46), Expect = 3.7
Identities = 7/14 (50%), Positives = 13/14 (92%)
Query: 60 DAILDIVDEKVELE 73
DA+L++VDE V+++
Sbjct: 11 DALLEVVDENVDIQ 24
>ref|NP_223348.1| putative TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 290
Score = 21.6 bits (44), Expect = 6.4
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 59 KDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKNVIITQGNEMRLLSLEMLA 116
K+ +LDI ++ + ++ N D G+ K K++ + + LL + LA
Sbjct: 92 KEVVLDIAQNNLKYLYEILQNLENDNMTDLGINIKITYKDISVNLDLKESLLVINALA 149
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,987
Number of Sequences: 1491
Number of extensions: 4277
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 117
length of database: 494,079
effective HSP length: 67
effective length of query: 50
effective length of database: 394,182
effective search space: 19709100
effective search space used: 19709100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)