BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645491|ref|NP_207666.1| alkylphosphonate uptake
protein (phnA) [Helicobacter pylori 26695]
(109 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223524.1| putative ALKYLPHOSPHONATE UPTAKE PROTEIN [... 208 2e-56
ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Heli... 26 0.22
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 23 1.9
ref|NP_223971.1| putative [Helicobacter pylori J99] 23 2.5
ref|NP_223679.1| arginine decarboxylase [Helicobacter pylor... 22 3.2
ref|NP_224054.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_223644.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_222928.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_223875.1| putative [Helicobacter pylori J99] 21 7.2
ref|NP_224175.1| putative [Helicobacter pylori J99] 21 9.4
ref|NP_223645.1| putative [Helicobacter pylori J99] 21 9.4
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 21 9.4
ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylor... 21 9.4
ref|NP_222733.1| putative [Helicobacter pylori J99] 21 9.4
>ref|NP_223524.1| putative ALKYLPHOSPHONATE UPTAKE PROTEIN [Helicobacter pylori J99]
Length = 109
Score = 208 bits (530), Expect = 2e-56
Identities = 98/109 (89%), Positives = 103/109 (93%)
Query: 1 MQDLPPCPKCNDAYTYHDGTQLICPSCLYEWNENEVNDEELIVKDCHNNLLQNGDSVILI 60
MQDLPPCPK NDAYTYHDGTQ +C SCLYEWN NE+++EELIVKDCHNNLLQNGDSVILI
Sbjct: 1 MQDLPPCPKRNDAYTYHDGTQFVCSSCLYEWNGNEISNEELIVKDCHNNLLQNGDSVILI 60
Query: 61 KDLKVKNSSLVLKKGTKIKNTKLVNSDHNVDCKIEGQSLSLKSEFLKKA 109
KDLKVK SSLVLKKGTKIKN KLVNSDHNVDCK+EGQSLSLKSEFLKKA
Sbjct: 61 KDLKVKGSSLVLKKGTKIKNIKLVNSDHNVDCKVEGQSLSLKSEFLKKA 109
>ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Helicobacter pylori J99]
Length = 474
Score = 26.2 bits (56), Expect = 0.22
Identities = 19/52 (36%), Positives = 24/52 (45%), Gaps = 2/52 (3%)
Query: 34 NEVNDEELIVKDCHNNLLQNGDSVILIKDLKVKNSSLVLKKGTKIKNTKLVN 85
++VND E IVK L N D V+ K K K + G +KN K N
Sbjct: 412 SQVNDTEAIVKVIEEVLKNNADKVLEYKSGKDKLFGFFV--GQAMKNLKGAN 461
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 23.1 bits (48), Expect = 1.9
Identities = 10/36 (27%), Positives = 18/36 (49%)
Query: 14 YTYHDGTQLICPSCLYEWNENEVNDEELIVKDCHNN 49
+ YHD P YE +N++ E+++V H +
Sbjct: 391 FKYHDSDLKNDPKEFYELAKNDLYREDIVVFSPHGD 426
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 22.7 bits (47), Expect = 2.5
Identities = 13/48 (27%), Positives = 24/48 (49%), Gaps = 4/48 (8%)
Query: 43 VKDCHNNLLQNGDSVILIKDLKVKNSSLVLKKGTKIKNTKLVNSDHNV 90
+K C N L Q + ++ +D ++KN+ +K I L N +H +
Sbjct: 260 LKSCANQLQQRYQNALIERDKELKNAKNNKEKHALI----LANYEHTL 303
>ref|NP_223679.1| arginine decarboxylase [Helicobacter pylori J99]
Length = 615
Score = 22.3 bits (46), Expect = 3.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 31 WNENEVNDEELIVKDCH 47
W+ NE E+ +VK CH
Sbjct: 12 WSNNEFKIEKGLVKVCH 28
>ref|NP_224054.1| putative [Helicobacter pylori J99]
Length = 274
Score = 21.6 bits (44), Expect = 5.5
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 65 VKNSSLVLKKGTKIKNTKLVNSDHNVDCKIEGQSLSLKSEFLKK 108
VKN LK +KN + + DC +E SL + LKK
Sbjct: 34 VKNK---LKDIISVKNALSFSLKGDFDCPLEENSLFKALQVLKK 74
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 21.6 bits (44), Expect = 5.5
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 32 NENEVNDEELIVKDCHNNLLQNGDSVIL 59
N N + + I + NN++QN D++I+
Sbjct: 438 NNNPIKNT--IETNTSNNIIQNNDNIII 463
>ref|NP_222928.1| putative [Helicobacter pylori J99]
Length = 326
Score = 21.6 bits (44), Expect = 5.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 28 LYEWNENEVNDEELIVKDCHNNLLQNGDSVILIKDLK 64
+Y E +EE+IV +C L VI + DLK
Sbjct: 145 MYLGKNAEDFEEEIIVCECARVSLGTIKEVIRLNDLK 181
>ref|NP_223875.1| putative [Helicobacter pylori J99]
Length = 183
Score = 21.2 bits (43), Expect = 7.2
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 34 NEVNDEELIVKDCHNNLLQN 53
N++ DE+LI+ NL++N
Sbjct: 108 NKILDEDLIMFSVSENLIRN 127
>ref|NP_224175.1| putative [Helicobacter pylori J99]
Length = 136
Score = 20.8 bits (42), Expect = 9.4
Identities = 9/26 (34%), Positives = 17/26 (64%)
Query: 71 VLKKGTKIKNTKLVNSDHNVDCKIEG 96
++ +GTKIK ++ +VD ++EG
Sbjct: 20 IIAQGTKIKGELHLDYHLHVDGELEG 45
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 20.8 bits (42), Expect = 9.4
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 39 EELIVKDCHNNLLQNGDSVILIKDLKVKNSSL 70
EE+++K N ++ L+K+L+ K L
Sbjct: 435 EEVLIKGAKTRYKANIKAIELLKELQAKQEIL 466
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 20.8 bits (42), Expect = 9.4
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 34 NEVNDEELIVKDCHNNLLQNGDSVILIKDLKVKNSSLVLKKGTKIKNTKLVNSDHNVDCK 93
+++N++ L + +NLL+N + + L ++ L K K LV N D +
Sbjct: 260 DKINEKYLRGYEAFSNLLKNVKDDVELNTLTKNFTNQKLSFAQKQKLCLLVLDSFNFDTQ 319
Query: 94 IEGQSLSLKSEF 105
+ L +E+
Sbjct: 320 SKKSILKKTNEY 331
>ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 576
Score = 20.8 bits (42), Expect = 9.4
Identities = 6/16 (37%), Positives = 8/16 (49%)
Query: 7 CPKCNDAYTYHDGTQL 22
CP C A YH ++
Sbjct: 400 CPNCQGALKYHKSLEV 415
>ref|NP_222733.1| putative [Helicobacter pylori J99]
Length = 350
Score = 20.8 bits (42), Expect = 9.4
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 45 DCHNNLLQNGDSVILIKDLKVKNSSLVLKKGTKIKNTKLVN 85
DCH N+ +N +L D S VL + K + + +N
Sbjct: 90 DCHANMFRNAFYKMLELDADFVLSGEVLGQRPKSQRKEALN 130
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,035
Number of Sequences: 1491
Number of extensions: 5190
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 109
length of database: 494,079
effective HSP length: 66
effective length of query: 43
effective length of database: 395,673
effective search space: 17013939
effective search space used: 17013939
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 42 (20.8 bits)