BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645492|ref|NP_207667.1| hypothetical protein
[Helicobacter pylori 26695]
(71 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223525.1| putative [Helicobacter pylori J99] 149 1e-38
ref|NP_222850.1| L-lactate permease [Helicobacter pylori J99] 25 0.23
ref|NP_222940.1| putative [Helicobacter pylori J99] 25 0.30
ref|NP_223814.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTE... 25 0.39
ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter... 24 0.66
ref|NP_223716.1| putative ZINC-METALLO PROTEASE [Helicobact... 23 1.1
ref|NP_223157.1| putative Outer membrane protein [Helicobac... 22 3.3
ref|NP_223125.1| amino acid permease [Helicobacter pylori J99] 21 4.3
ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter p... 21 5.6
ref|NP_223485.1| ATP synthase F0, subunit a [Helicobacter p... 21 5.6
ref|NP_223910.1| NADH oxidoreductase I [Helicobacter pylori... 20 7.3
ref|NP_223666.1| putative [Helicobacter pylori J99] 20 7.3
ref|NP_223697.1| 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYL TRANSFER... 20 9.6
ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter ... 20 9.6
>ref|NP_223525.1| putative [Helicobacter pylori J99]
Length = 71
Score = 149 bits (375), Expect = 1e-38
Identities = 70/71 (98%), Positives = 71/71 (99%)
Query: 1 MREFFKKLGTEYASKLFLVYWLRWMLSALVMLPFMEIFYYFNFPLWLNLFLGQTIGAVIF 60
MREFFKKLGTEYASKLFLVYWLRWMLSALVMLPFME+FYYFNFPLWLNLFLGQTIGAVIF
Sbjct: 1 MREFFKKLGTEYASKLFLVYWLRWMLSALVMLPFMEVFYYFNFPLWLNLFLGQTIGAVIF 60
Query: 61 FKLDKLIFSKK 71
FKLDKLIFSKK
Sbjct: 61 FKLDKLIFSKK 71
>ref|NP_222850.1| L-lactate permease [Helicobacter pylori J99]
Length = 551
Score = 25.4 bits (54), Expect = 0.23
Identities = 12/28 (42%), Positives = 15/28 (52%)
Query: 33 PFMEIFYYFNFPLWLNLFLGQTIGAVIF 60
PF+E NFP+ L L T+G IF
Sbjct: 347 PFVEANQSVNFPVVFKLLLINTVGTSIF 374
>ref|NP_222940.1| putative [Helicobacter pylori J99]
Length = 176
Score = 25.0 bits (53), Expect = 0.30
Identities = 14/46 (30%), Positives = 24/46 (51%), Gaps = 9/46 (19%)
Query: 16 LFLVYWLRWMLSALVMLPFMEIFYYFNFPLWLNLFLGQTIGAVIFF 61
+F V+ L + LSA +M+ F + +F+ IG+V+FF
Sbjct: 133 IFCVFLLLFYLSAFLMVAFKDT---------KRMFISVLIGSVVFF 169
>ref|NP_223814.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN [Helicobacter pylori
J99]
Length = 223
Score = 24.6 bits (52), Expect = 0.39
Identities = 14/54 (25%), Positives = 27/54 (49%), Gaps = 3/54 (5%)
Query: 12 YASKLFLVYWLRWMLSALVMLPFMEIFY--YFNFPLWLNLFLGQTIGAVIFFKL 63
+ SK+ +V R L ++ ++P + + YF W +L + + +VI F L
Sbjct: 44 FGSKI-MVLACRVYLESIRIIPLLAWLFIVYFGLASWFDLHISAVLASVIVFSL 96
>ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter pylori J99]
Length = 437
Score = 23.9 bits (50), Expect = 0.66
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 4 FFKKLGTEYASKLFLVYWLRWMLSA---LVMLPFMEIF--YYFNFPLWLNLFLGQTIG 56
FF KLG + K +VY + M L +LP EI + F F L L G ++G
Sbjct: 74 FFGKLGDKKGRKTSMVYSIILMALGSFMLALLPTKEIVGEWAFLFLLLARLLQGFSVG 131
>ref|NP_223716.1| putative ZINC-METALLO PROTEASE [Helicobacter pylori J99]
Length = 407
Score = 23.1 bits (48), Expect = 1.1
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 2 REFFKKLGTEYASKLFLVYWLRWMLSALVMLPFMEIFYYFNFPLWLNLF 50
++FFK L L L+Y L ++ + F F F + NLF
Sbjct: 142 KDFFKGLLLTLGVGLLLIYTLIMIIEHVEHWEISSFFVVFVFMILANLF 190
>ref|NP_223157.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 465
Score = 21.6 bits (44), Expect = 3.3
Identities = 12/36 (33%), Positives = 18/36 (49%)
Query: 35 MEIFYYFNFPLWLNLFLGQTIGAVIFFKLDKLIFSK 70
MEI YF + L+ LF G + + +K + I K
Sbjct: 1 MEIKKYFLYALFFLLFSGLFLSKLQAYKFNMSIVGK 36
>ref|NP_223125.1| amino acid permease [Helicobacter pylori J99]
Length = 475
Score = 21.2 bits (43), Expect = 4.3
Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 9 GTEYASKLFLVYWLRWMLS 27
GT Y +F +YWL W+++
Sbjct: 93 GTGYM--VFWMYWLGWVIT 109
>ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter pylori J99]
Length = 383
Score = 20.8 bits (42), Expect = 5.6
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 5 FKKLGTEYASKLFLVYWLRWMLSALVMLPF-MEIFYYFNFPL 45
FKKLG ++F + + LS ++ +E + FP+
Sbjct: 76 FKKLGVSLLKRIFAYLLILYTLSFILTFSLNLEPIFMVIFPI 117
>ref|NP_223485.1| ATP synthase F0, subunit a [Helicobacter pylori J99]
Length = 226
Score = 20.8 bits (42), Expect = 5.6
Identities = 10/35 (28%), Positives = 18/35 (50%)
Query: 5 FKKLGTEYASKLFLVYWLRWMLSALVMLPFMEIFY 39
F+ G +FL+ L + A+ + PFM +F+
Sbjct: 165 FRLFGNIKGDDMFLLIMLLLVPWAVPVAPFMVLFF 199
>ref|NP_223910.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 612
Score = 20.4 bits (41), Expect = 7.3
Identities = 9/24 (37%), Positives = 12/24 (49%)
Query: 45 LWLNLFLGQTIGAVIFFKLDKLIF 68
LW L +G A F+L L+F
Sbjct: 411 LWFVLLIGAIFTAFYSFRLIMLVF 434
>ref|NP_223666.1| putative [Helicobacter pylori J99]
Length = 420
Score = 20.4 bits (41), Expect = 7.3
Identities = 10/39 (25%), Positives = 20/39 (50%)
Query: 4 FFKKLGTEYASKLFLVYWLRWMLSALVMLPFMEIFYYFN 42
F LG ++ FLV +++ ++S +P + + FN
Sbjct: 252 FMLLLGFFQQTRGFLVSYVKKIISLTFYMPLLLLLVLFN 290
>ref|NP_223697.1| 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYL TRANSFERASE [Helicobacter pylori
J99]
Length = 429
Score = 20.0 bits (40), Expect = 9.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 43 FPLWLNLF 50
F LWLNLF
Sbjct: 414 FQLWLNLF 421
>ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter pylori J99]
Length = 941
Score = 20.0 bits (40), Expect = 9.6
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 33 PFMEIFYYFNFPLWLN 48
P E++++FN P N
Sbjct: 430 PIEEVYHFFNDPTHFN 445
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.338 0.150 0.496
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,069
Number of Sequences: 1491
Number of extensions: 2782
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 14
length of query: 71
length of database: 494,079
effective HSP length: 47
effective length of query: 24
effective length of database: 424,002
effective search space: 10176048
effective search space used: 10176048
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 40 (20.0 bits)