BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645496|ref|NP_207671.1| Holliday junction
endodeoxyribonuclease (ruvC) [Helicobacter pylori 26695]
(157 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223529.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [... 299 3e-83
ref|NP_224210.1| FLAGELLAR BASAL-BODY ROD PROTEIN (DISTAL R... 27 0.26
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 26 0.44
ref|NP_223810.1| glucose-6-phosphate isomerase [Helicobacte... 24 1.7
ref|NP_223596.1| D-Amino acid dehydrogenase [Helicobacter p... 24 2.2
ref|NP_223893.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223270.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223613.1| GLYCEROL-3-PHOSPHATE DEHYDROGENASE (NAD+) ... 23 4.9
ref|NP_223447.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylo... 23 4.9
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 22 6.3
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 22 6.3
ref|NP_223756.1| ADENYLOSUCCINATE LYASE [Helicobacter pylor... 22 8.3
ref|NP_223705.1| putative chemotaxis protein [Helicobacter ... 22 8.3
ref|NP_223653.1| putative [Helicobacter pylori J99] 22 8.3
ref|NP_223542.1| putative [Helicobacter pylori J99] 22 8.3
ref|NP_223005.1| DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEI... 22 8.3
>ref|NP_223529.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [Helicobacter pylori J99]
Length = 157
Score = 299 bits (765), Expect = 3e-83
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MRILGIDPGSRKCGYAIISHASNKLSLITAGFINITTTRLQEQILDLIEALDCLLDRYEV 60
MRILGIDPGSRKCGYAIISHASNKLSLITAGFINITTTRLQEQILDLIEALDCLLDRYEV
Sbjct: 1 MRILGIDPGSRKCGYAIISHASNKLSLITAGFINITTTRLQEQILDLIEALDCLLDRYEV 60
Query: 61 NEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKEQ 120
NEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKEQ
Sbjct: 61 NEVAIEDIFFGYNPKSVIKLAQFRGALSLKILERIGNFSEYTPLQVKKALTGNGKAAKEQ 120
Query: 121 VAFMVKRLLNITSEIKPLDISDAIAVAITHAQRLK 155
VAFMVKRLLNITSEIKPLDISDAIAVAITHAQRLK
Sbjct: 121 VAFMVKRLLNITSEIKPLDISDAIAVAITHAQRLK 155
>ref|NP_224210.1| FLAGELLAR BASAL-BODY ROD PROTEIN (DISTAL ROD PROTEIN) [Helicobacter
pylori J99]
Length = 262
Score = 26.9 bits (58), Expect = 0.26
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 14 GYAIISHASNK-LSLITAGFINITTTRLQEQILDLIEALDCLLDRYEVNEVAIE 66
G AI+ + ++ L + GF+ ++ RL E++ DLI A YE N +I+
Sbjct: 199 GDAIVGNPDSQGLGKLRQGFLELSNVRLVEEMTDLITAQRA----YEANSKSIQ 248
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 26.2 bits (56), Expect = 0.44
Identities = 26/91 (28%), Positives = 43/91 (46%), Gaps = 6/91 (6%)
Query: 41 QEQILDLIEALDCLLDRYEVNEVAIEDIFFGYNPKSVIK-LAQFRGALSLKILERIGNFS 99
+E+ LD+ + LL + E +E+I Y + + + + AL++ IG S
Sbjct: 311 KEESLDVAYQIKALLKKGE----NLENIAILYRLNGLSRSIEESLNALNIPY-RLIGAVS 365
Query: 100 EYTPLQVKKALTGNGKAAKEQVAFMVKRLLN 130
Y +VK AL AK+ F +KR+LN
Sbjct: 366 FYERAEVKDALALMHVVAKKDDRFFIKRVLN 396
>ref|NP_223810.1| glucose-6-phosphate isomerase [Helicobacter pylori J99]
Length = 545
Score = 24.3 bits (51), Expect = 1.7
Identities = 11/32 (34%), Positives = 18/32 (55%)
Query: 49 EALDCLLDRYEVNEVAIEDIFFGYNPKSVIKL 80
E L LD+ E ++A +FFG P +++ L
Sbjct: 439 ELLSKGLDKDEAKDLAHHRVFFGNRPSNILLL 470
>ref|NP_223596.1| D-Amino acid dehydrogenase [Helicobacter pylori J99]
Length = 410
Score = 23.9 bits (50), Expect = 2.2
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 111 TGNGKAAKEQVAFMVKRLLNITSEIKPLDISDAI 144
T N KEQ+A M K L T +P ++ DAI
Sbjct: 310 TNNALIDKEQIANMKKNLAAFT---QPFEMKDAI 340
>ref|NP_223893.1| putative [Helicobacter pylori J99]
Length = 245
Score = 23.5 bits (49), Expect = 2.8
Identities = 17/87 (19%), Positives = 35/87 (39%), Gaps = 3/87 (3%)
Query: 15 YAIISHASNKLSLITAGFINITTTRLQEQILDLIEALDCLLDRYEVNEVAIEDIFFGYNP 74
Y + +H ++++ F+ + ++LDL + + E + IE+ N
Sbjct: 24 YHLFAHIQQQIAIYLVQFLK---QKHYAKVLDLGSGSGAVFNALEQQNIVIENFIALDNS 80
Query: 75 KSVIKLAQFRGALSLKILERIGNFSEY 101
+++KL KI NF E+
Sbjct: 81 MNMLKLHPTHSINIQKISLEHANFEEH 107
>ref|NP_223270.1| putative [Helicobacter pylori J99]
Length = 477
Score = 23.5 bits (49), Expect = 2.8
Identities = 16/54 (29%), Positives = 24/54 (43%)
Query: 89 LKILERIGNFSEYTPLQVKKALTGNGKAAKEQVAFMVKRLLNITSEIKPLDISD 142
L+ L+ GN SEY L ++ AL N + VK L T + L + +
Sbjct: 237 LQSLKAQGNLSEYDILDMQFALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRE 290
>ref|NP_223613.1| GLYCEROL-3-PHOSPHATE DEHYDROGENASE (NAD+) [Helicobacter pylori J99]
Length = 312
Score = 22.7 bits (47), Expect = 4.9
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 91 ILERIGNFSEYTPLQVKKALTGNGKAAKEQVAFMVKR 127
I+E + YTP+ + AL GK+ E + +++R
Sbjct: 275 IVEIARKYGIYTPIASELALLLKGKSVLESMNDLIRR 311
>ref|NP_223447.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylori J99]
Length = 174
Score = 22.7 bits (47), Expect = 4.9
Identities = 10/21 (47%), Positives = 15/21 (70%)
Query: 130 NITSEIKPLDISDAIAVAITH 150
N +E+K L+ S+ +AVAI H
Sbjct: 118 NRFAEVKILEASELLAVAIQH 138
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 533
Score = 22.3 bits (46), Expect = 6.3
Identities = 16/52 (30%), Positives = 24/52 (45%)
Query: 87 LSLKILERIGNFSEYTPLQVKKALTGNGKAAKEQVAFMVKRLLNITSEIKPL 138
LSLK IGN Y ++ K+ L G + ++V + L I E P+
Sbjct: 79 LSLKDAVLIGNRRLYDAIKEKERLYTEGDLSDDKVNARLGELETICVEEDPM 130
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 22.3 bits (46), Expect = 6.3
Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 35 ITTTRLQEQILDLIEALDC--LLDRYEVNEVAIEDIFFGY 72
++ R ++ + ++ + +C +LD Y NE+ + D+F Y
Sbjct: 903 LSLKRFKDDVKEVSKGYECGIMLDNY--NEIKVGDVFETY 940
>ref|NP_223756.1| ADENYLOSUCCINATE LYASE [Helicobacter pylori J99]
Length = 440
Score = 21.9 bits (45), Expect = 8.3
Identities = 7/27 (25%), Positives = 15/27 (54%)
Query: 19 SHASNKLSLITAGFINITTTRLQEQIL 45
+HA +L + GF+ + T + Q++
Sbjct: 188 AHAPLELEELACGFLGLKTANISNQVI 214
>ref|NP_223705.1| putative chemotaxis protein [Helicobacter pylori J99]
Length = 312
Score = 21.9 bits (45), Expect = 8.3
Identities = 14/32 (43%), Positives = 20/32 (61%), Gaps = 1/32 (3%)
Query: 34 NIT-TTRLQEQILDLIEALDCLLDRYEVNEVA 64
NIT TTR++ LI L+ +LD ++NE A
Sbjct: 137 NITGTTRIENDKTLLILDLESILDDLKLNEDA 168
>ref|NP_223653.1| putative [Helicobacter pylori J99]
Length = 177
Score = 21.9 bits (45), Expect = 8.3
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 34 NITTTRLQEQILDLIEALDCL 54
N T+T+ +E I+D +E +D +
Sbjct: 128 NYTSTQEKENIMDKLEQIDSI 148
>ref|NP_223542.1| putative [Helicobacter pylori J99]
Length = 174
Score = 21.9 bits (45), Expect = 8.3
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 72 YNPKSVIKLAQFRGALSLKILERIG 96
Y PK+ +++ ++ GAL K + G
Sbjct: 140 YEPKTEVEIRRYEGALKRKEMRTRG 164
>ref|NP_223005.1| DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN [Helicobacter pylori
J99]
Length = 334
Score = 21.9 bits (45), Expect = 8.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 50 ALDCLLDRYEVNEVAIEDIFFGYN 73
A+D L +++ +N+ IE FF N
Sbjct: 47 AIDALREQFGLNKPLIEQYFFFIN 70
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.139 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,720
Number of Sequences: 1491
Number of extensions: 5673
Number of successful extensions: 30
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 16
length of query: 157
length of database: 494,079
effective HSP length: 71
effective length of query: 86
effective length of database: 388,218
effective search space: 33386748
effective search space used: 33386748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)