BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645497|ref|NP_207672.1| hypothetical protein
[Helicobacter pylori 26695]
         (57 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223530.1|  putative [Helicobacter pylori J99]               96  1e-22
ref|NP_223790.1|  putative [Helicobacter pylori J99]               29  0.017
ref|NP_224002.1|  TYPE II DNA MODIFICATION ENZYME (METHYLTRA...    23  0.91
ref|NP_222949.1|  NEUTROPHIL-ACTIVATING PROTEIN A [Helicobac...    22  2.0
ref|NP_223017.1|  putative [Helicobacter pylori J99]               22  3.5
ref|NP_223760.1|  putative [Helicobacter pylori J99]               21  5.9
ref|NP_223982.1|  PHOSPHOGLYCERATE KINASE [Helicobacter pylo...    20  7.7
ref|NP_222761.1|  putative SUGAR NUCLEOTIDE BIOSYNTHESIS [He...    20  7.7

>ref|NP_223530.1| putative [Helicobacter pylori J99]
          Length = 243

 Score = 95.9 bits (237), Expect = 1e-22
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 1  MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEW 45
          MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEW
Sbjct: 1  MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEW 45



>ref|NP_223790.1| putative [Helicobacter pylori J99]
          Length = 285

 Score = 29.3 bits (64), Expect = 0.017
 Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 9/52 (17%)

Query: 2  KANTIILVDWENFRRDIK---------QTKCVNYNIALDVIVTIRAFLLDDE 44
          K  T I VDWEN   D+K         +    N+N    ++  IR+FL  +E
Sbjct: 25 KTETTIFVDWENLLADLKAIQETDERLKESNFNFNNPEQLLALIRSFLEPEE 76



>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 649

 Score = 23.5 bits (49), Expect = 0.91
 Identities = 7/15 (46%), Positives = 11/15 (72%)

Query: 31  DVIVTIRAFLLDDEW 45
           D+I TI  +++DD W
Sbjct: 439 DIIATINGYVIDDVW 453



>ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobacter pylori J99]
          Length = 144

 Score = 22.3 bits (46), Expect = 2.0
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 1  MKANTIIL-VDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEWDQSYLLLYHP 55
          ++A+ I+L +   NF  ++K T   N + A + I    A + DD  ++   L +HP
Sbjct: 10 LQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEGFADMFDDLAERIVQLGHHP 65



>ref|NP_223017.1| putative [Helicobacter pylori J99]
          Length = 321

 Score = 21.6 bits (44), Expect = 3.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 23 CVNYNIALDVIVTIRAFLLDDEW 45
          CV  N  LD++ +++A L + EW
Sbjct: 66 CVCCNKRLDLVESLKATLNNYEW 88



>ref|NP_223760.1| putative [Helicobacter pylori J99]
          Length = 127

 Score = 20.8 bits (42), Expect = 5.9
 Identities = 7/41 (17%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 7  ILVDWENF-RRDIKQTKCVNYNIALDVIVTIRAFLLDDEWD 46
          ++ +W+   ++D +  K + ++   ++   +   + +DEWD
Sbjct: 41 LVYEWQKKQKKDFQSAKSLKFDSVSELEKDLNMEVTNDEWD 81



>ref|NP_223982.1| PHOSPHOGLYCERATE KINASE [Helicobacter pylori J99]
          Length = 402

 Score = 20.4 bits (41), Expect = 7.7
 Identities = 10/30 (33%), Positives = 12/30 (39%)

Query: 26  YNIALDVIVTIRAFLLDDEWDQSYLLLYHP 55
           Y  A    + +  FLL  E D  Y    HP
Sbjct: 164 YGTAKFAPIKVSGFLLKKEIDSFYQAFNHP 193



>ref|NP_222761.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [Helicobacter pylori J99]
          Length = 310

 Score = 20.4 bits (41), Expect = 7.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 39 FLLDDEWDQSYLLLYHPT 56
          +LLD +  Q+YL  Y PT
Sbjct: 40 YLLDKDNVQAYLKEYKPT 57



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.327    0.142    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,647
Number of Sequences: 1491
Number of extensions: 1512
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 8
length of query: 57
length of database: 494,079
effective HSP length: 33
effective length of query: 24
effective length of database: 444,876
effective search space: 10677024
effective search space used: 10677024
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 41 (20.4 bits)