BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645499|ref|NP_207674.1| hypothetical protein
[Helicobacter pylori 26695]
(140 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223610.1| putative [Helicobacter pylori J99] 37 2e-04
ref|NP_223787.1| putative [Helicobacter pylori J99] 33 0.004
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 31 0.011
ref|NP_224049.1| putative [Helicobacter pylori J99] 28 0.074
ref|NP_223405.1| putative [Helicobacter pylori J99] 28 0.13
ref|NP_223659.1| putative [Helicobacter pylori J99] 27 0.16
ref|NP_223177.1| putative Glycolate oxidase [Helicobacter p... 27 0.16
ref|NP_222961.1| putative [Helicobacter pylori J99] 27 0.16
ref|NP_223811.1| putative Outer membrane protein [Helicobac... 27 0.21
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 27 0.21
ref|NP_223555.1| Hydrogenase expression/formation protein [... 27 0.28
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 27 0.28
ref|NP_223025.1| putative [Helicobacter pylori J99] 26 0.37
ref|NP_223617.1| putative [Helicobacter pylori J99] 26 0.48
ref|NP_223386.1| putative [Helicobacter pylori J99] 26 0.48
ref|NP_224110.1| putative [Helicobacter pylori J99] 25 0.62
ref|NP_223830.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223788.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 25 1.1
ref|NP_223388.1| putative [Helicobacter pylori J99] 24 1.4
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 24 1.8
ref|NP_223761.1| putative [Helicobacter pylori J99] 24 1.8
ref|NP_223629.1| putative [Helicobacter pylori J99] 24 1.8
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 24 1.8
ref|NP_223773.1| putative [Helicobacter pylori J99] 23 2.4
ref|NP_223546.1| putative [Helicobacter pylori J99] 23 2.4
ref|NP_223971.1| putative [Helicobacter pylori J99] 23 3.1
ref|NP_223755.1| Pyruvate ferrodoxin oxidoreductase [Helico... 23 3.1
ref|NP_223188.1| cag island protein [Helicobacter pylori J99] 23 3.1
ref|NP_223039.1| putative [Helicobacter pylori J99] 23 3.1
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 23 3.1
ref|NP_222780.1| putative [Helicobacter pylori J99] 23 3.1
ref|NP_223516.1| putative [Helicobacter pylori J99] 23 4.0
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 23 4.0
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 23 4.0
ref|NP_222774.1| putative [Helicobacter pylori J99] 23 4.0
ref|NP_224104.1| putative [Helicobacter pylori J99] 22 5.3
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 22 5.3
ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN... 22 5.3
ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacte... 22 5.3
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 22 5.3
ref|NP_222914.1| putative [Helicobacter pylori J99] 22 5.3
ref|NP_224094.1| UBIQUINONE/MENAQUINONE BIOSYNTHESIS METHLY... 22 6.9
ref|NP_224007.1| UDP-N-ACETYLGLUCOSAMINE ACYLTRANSFERASE [H... 22 6.9
ref|NP_224124.1| L-SERYL-TRNA(SER) SELENIUM TRANSFERASE [He... 22 9.0
ref|NP_223882.1| outer membrane protein - adhesin [Helicoba... 22 9.0
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 22 9.0
ref|NP_223641.1| putative [Helicobacter pylori J99] 22 9.0
ref|NP_223252.1| putative [Helicobacter pylori J99] 22 9.0
ref|NP_222966.1| putative [Helicobacter pylori J99] 22 9.0
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 37.0 bits (84), Expect = 2e-04
Identities = 20/56 (35%), Positives = 32/56 (56%)
Query: 74 KDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDIK 129
KDL+K D E + + L EE + ++KN++T+Q+ KIA+ QK +IK
Sbjct: 30 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK 85
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 32.7 bits (73), Expect = 0.004
Identities = 16/75 (21%), Positives = 40/75 (53%)
Query: 57 IQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQN 116
I+DI+ +++C + + + D++E + L + + E+ I++N++ +++ +N
Sbjct: 411 IKDIEKQKKSCKEQTWKFLINEFKSDIQEYNKKYCGLEKGINNLEKEISENQEKVKKLEN 470
Query: 117 KIANFQKYYKDIKDI 131
+I +K IK I
Sbjct: 471 EIKELEKNMVSIKPI 485
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 31.2 bits (69), Expect = 0.011
Identities = 17/59 (28%), Positives = 29/59 (48%)
Query: 77 EKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDIKDIDDYS 135
E+ QK L E+E + L + + + ESI K ++ N I Q+ +D I ++S
Sbjct: 592 ERTQKSLSEIEANINILVQSIADNAESIKMQNKGVENIHNSINALQQDVQDNLTIANHS 650
>ref|NP_224049.1| putative [Helicobacter pylori J99]
Length = 161
Score = 28.5 bits (62), Expect = 0.074
Identities = 16/46 (34%), Positives = 23/46 (49%), Gaps = 1/46 (2%)
Query: 24 LISAWRGKDDAIPIETRLH-KNKLTIISKTDSIEIQDIQFNRENCS 68
L+ G P+E + + I SK DSI IQ ++ NR NC+
Sbjct: 19 LVGCGNGGGGESPVEMIANSEGTFQIDSKADSITIQGVKLNRGNCA 64
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 27.7 bits (60), Expect = 0.13
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 43 KNKLTIISKTDSIEIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEE 102
++K T++ KT E + + SK+L+K+ E+E + L + LE++
Sbjct: 28 QHKETLLKKTHE-EKNQLNSRLSSLGEAIRSKELQKV-----EIERQMVALKKSLEKNRN 81
Query: 103 SIAKNKKTIQEYQNKIANFQK 123
+K + Y+ + + QK
Sbjct: 82 ESLVQEKVLTNYRKSLDHLQK 102
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 27.3 bits (59), Expect = 0.16
Identities = 27/123 (21%), Positives = 58/123 (46%), Gaps = 18/123 (14%)
Query: 35 IPIETRLHKNKLTIISKTDSIEIQDIQFN-RENCS----------------HTYTSKDLE 77
+P + H + I+KT+ + + ++F RE+C H + + L
Sbjct: 166 VPHAHQDHAHIHCFINKTNQLTRRRLRFKGREDCKEFFNELRSEFAYRLNEHLLSEEYLY 225
Query: 78 KIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDIKDIDDYSAL 137
+ L+EL+ +L ++LE++E+++ + K E+ A ++Y +++KD + AL
Sbjct: 226 VNEPKLKELDNIKLQL-QDLEKEEKALEQIKSPQDEWDLNKALQKEYLQELKDKNKAKAL 284
Query: 138 MAQ 140
Q
Sbjct: 285 DIQ 287
Score = 25.4 bits (54), Expect = 0.62
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 25/99 (25%)
Query: 40 RLHKNKLTIISKTDSIEIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELER 99
+L+ N ++SK ++QD Q N + L +++DL++ EE E ER
Sbjct: 479 KLNDNTYELVSK----QLQDYQ----NTMLLLAKERLLFLEQDLKQKEE-------EFER 523
Query: 100 DEESIAKNKKTIQE----------YQNKIANFQKYYKDI 128
+E K+ K +E + +I F K KDI
Sbjct: 524 AKEHYVKSSKHYRETSLSPKEKQGFLKQIKQFSKISKDI 562
>ref|NP_223177.1| putative Glycolate oxidase [Helicobacter pylori J99]
Length = 459
Score = 27.3 bits (59), Expect = 0.16
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 56 EIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELER 99
E QD+ F+R N S + + +K+ +D+ +P L +E+ +
Sbjct: 316 EEQDLWFSRRNASQSISVYGKKKLNEDVTVPRASLPSLLQEVAK 359
>ref|NP_222961.1| putative [Helicobacter pylori J99]
Length = 142
Score = 27.3 bits (59), Expect = 0.16
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 55 IEIQDIQFNRENCSHTYTSKDLEKIQKDL----EELEEGVPELFEELERDEESIAKNKKT 110
+EI+ Q EN + KDL+ ++KD +ELE+ L +E ++++E + K ++
Sbjct: 70 MEIEYYQQEGENLT-----KDLKILEKDYLLANQELEKAKIILEKEKQKEKEILEKKEQA 124
Query: 111 IQEYQNKIANFQK 123
+ + I ++QK
Sbjct: 125 LLDENAMILHWQK 137
>ref|NP_223811.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 26.9 bits (58), Expect = 0.21
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 47 TIISKTDSIEIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEG 89
T I +TDS+E Q+++ N+ ++ ++ LE K+ E++ G
Sbjct: 117 TNILQTDSLETQNMKHNKNVRNYVFSDAYLEYAYKNYFEIKAG 159
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 26.9 bits (58), Expect = 0.21
Identities = 13/42 (30%), Positives = 20/42 (46%)
Query: 77 EKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKI 118
E+ QK L E+E + L + + ESI K ++E I
Sbjct: 594 ERTQKSLSEIEANINILVQSISDTSESIKNQVKEVEEINASI 635
>ref|NP_223555.1| Hydrogenase expression/formation protein [Helicobacter pylori J99]
Length = 242
Score = 26.6 bits (57), Expect = 0.28
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 18/108 (16%)
Query: 16 SLGKGLNS-LISAWRGKDDAIPIETRLHKNKLTIISKTDSIEIQDIQFNRENCSHTYTSK 74
+LG +N L+S G D + T IISK D IE+ + +
Sbjct: 147 NLGAAMNIVLLSVPEGDDKVLKYPTMFMCADAVIISKADMIEVFNFR------------- 193
Query: 75 DLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQ 122
+ ++++D+++L+ P +F +D +S+ K + E K N+Q
Sbjct: 194 -VSQVKEDMQKLKPEAP-IFLMSSKDPKSLEDFKNFLLE--KKRENYQ 237
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 26.6 bits (57), Expect = 0.28
Identities = 16/60 (26%), Positives = 29/60 (47%), Gaps = 12/60 (20%)
Query: 83 LEELEEGVPELFEELERDEESIAKNKKTIQEYQN------------KIANFQKYYKDIKD 130
++E E + LFE E EE + + +QE++N K AN K+Y+++ +
Sbjct: 1 MKEQEWDLSALFENKESAEEFLKTLQTEVQEFENAYQNNLKNLDAAKFANTLKHYENLSE 60
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 26.2 bits (56), Expect = 0.37
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 56 EIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEE-----------LERDEESI 104
EIQ+ ++EN T +++ + +D+E E +P+ E LE++E +
Sbjct: 284 EIQENSNDQENKKETQETQENTETPQDIETQELEIPKEEETQEVAEKTQVQGLEKEEIAE 343
Query: 105 AKNKKTIQEYQNK 117
+K IQE Q++
Sbjct: 344 TPQEKEIQETQDE 356
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 25.8 bits (55), Expect = 0.48
Identities = 18/59 (30%), Positives = 29/59 (48%), Gaps = 1/59 (1%)
Query: 77 EKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDIKDIDDYS 135
EK +++ L GV + ++ S +N+KT +EY N + N + Y D DD S
Sbjct: 371 EKAKQNGVILTSGVCFSMHKDFENQASWERNQKT-EEYHNALRNLRDSYPDAFSSDDKS 428
>ref|NP_223386.1| putative [Helicobacter pylori J99]
Length = 569
Score = 25.8 bits (55), Expect = 0.48
Identities = 18/103 (17%), Positives = 45/103 (43%), Gaps = 18/103 (17%)
Query: 25 ISAWRGKDDAIPIETRLHKNKLTIISKTDSIEIQDIQFNRENCSHTYTSKDLEKIQKDLE 84
+S + DA + + + KLTII + IQD+ + + +
Sbjct: 248 LSHIKALQDATQKKIKENGGKLTIIEEAKKSVIQDV------------------VYRQMP 289
Query: 85 ELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKD 127
++ + ++ E+E +++ K +K IQ+ +I+ + + ++
Sbjct: 290 PAKQALQDINREMEYLNKTLEKRRKEIQDLNKEISQARIHLRE 332
>ref|NP_224110.1| putative [Helicobacter pylori J99]
Length = 306
Score = 25.4 bits (54), Expect = 0.62
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 84 EELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQK 123
EE E E+F + ++E+ ++K+ K+IQE KI +K
Sbjct: 169 EEYLESYDEVFSAIIKNEQKVSKD-KSIQEKIKKIEKQEK 207
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 24.6 bits (52), Expect = 1.1
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 72 TSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNK-KTIQEYQNKIANFQK 123
+ K++ + QK+ E + + ELE++E+ + K KT QE Q QK
Sbjct: 99 SKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQK 151
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 24.6 bits (52), Expect = 1.1
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 74 KDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKI 118
K LE +QK+L+E + V +EL + E I + K+ E ++++
Sbjct: 112 KGLELLQKELDEKSKQV----QELHQKEAEIERLKRENNEAESRL 152
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 24.6 bits (52), Expect = 1.1
Identities = 24/89 (26%), Positives = 43/89 (47%), Gaps = 16/89 (17%)
Query: 44 NKLT--IISKTDSIEIQDIQFNRE--NCSHTYTSKDLEKIQKDLEELEEGVPELFEELER 99
NKL +S + + + FN+ +T ++++ QKDLE + ++ ER
Sbjct: 575 NKLVKDFLSSNKELVGKALNFNKAVAEAKNTGNYDEVKQAQKDLE-------KSLKKRER 627
Query: 100 DEESIAKNKKTIQEYQNKI-----ANFQK 123
E+ +AKN ++ +NK+ AN QK
Sbjct: 628 LEKDVAKNLESKSGNKNKMEAKSQANSQK 656
Score = 23.1 bits (48), Expect = 3.1
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 32/93 (34%)
Query: 74 KDLEKIQKDLEELEEGV------------------------PELF----EELERDEESI- 104
KDLEK K E LE+ V E+F +E RD +I
Sbjct: 616 KDLEKSLKKRERLEKDVAKNLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIA 675
Query: 105 -AKNKKTI-QEYQNKIANFQKYYKDI-KDIDDY 134
A+N K I +E +K+ N K KD K D++
Sbjct: 676 YAQNLKGIKRELSDKLENINKDLKDFSKSFDEF 708
Score = 22.7 bits (47), Expect = 4.0
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 69 HTYTSKDLEKIQKDL--EELEEGVPELFEELERDEESIAK-NKKTIQEYQNKIANFQKYY 125
+ Y L Q+ L EE++ V + E L ++ + +KK +++QN+I +FQK
Sbjct: 378 YLYKEDQLTGSQRALSQEEIQNKV-DFMEFLAQNNAKLDNLSKKEKEKFQNEIEDFQKDS 436
Query: 126 KDIKD 130
K D
Sbjct: 437 KAYLD 441
>ref|NP_223388.1| putative [Helicobacter pylori J99]
Length = 192
Score = 24.3 bits (51), Expect = 1.4
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 74 KDLEKIQKDLEELEEGVP-------ELFEELERDEESIAKNKKTIQEYQN 116
KDL+ I K+ + +E + E+F++LER+ ++ K +E++N
Sbjct: 17 KDLQSIFKNADGRDEKLKRFNQEALEVFQKLERESLKELESLKNNEEWEN 66
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 23.9 bits (50), Expect = 1.8
Identities = 17/69 (24%), Positives = 29/69 (41%)
Query: 69 HTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDI 128
H + EK K+LEELE + E L+ E + + + + +K K+
Sbjct: 639 HLIKQRFFEKETKELEELENALNEKEALLDEFIEEHSNEEGLFDGLKINESVLKKELKNA 698
Query: 129 KDIDDYSAL 137
D++D L
Sbjct: 699 TDLEDKQIL 707
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 23.9 bits (50), Expect = 1.8
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 73 SKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIAN 120
SK K +EEL GV + EE++ + K T ++ + + N
Sbjct: 44 SKFTNNTLKIIEELNNGVKQASEEIKEKAFDFSNEKLTNEQIKELLNN 91
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 23.9 bits (50), Expect = 1.8
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 31 KDDAIPIETRLHKNKLTIISKTDSIEIQDIQFNRENCSHTYT-SKDLEKIQKDLEELEEG 89
K D +E HKNK++ + K ++QD + +E H K EK + L++G
Sbjct: 240 KTDLKELEEYYHKNKVSYLDKEG--KLQDFKSVQEQVKHDLNMQKANEKALRSYIALKKG 297
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 23.9 bits (50), Expect = 1.8
Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 94 FEELERDEESIAKNKKTIQEYQNKIANFQKYYKD-------IKDIDDYSA 136
F E+++++E +A + ++ + + N + +D IK++ DY A
Sbjct: 27 FNEIKKEQEEVAAKEDALKARKKLLNNTHDFLEDLVFRKQKIKELVDYRA 76
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 23.5 bits (49), Expect = 2.4
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 40 RLHKNKLTIISKTDSIEIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELER 99
R +K I+ + + Q I N E+ + K EKI+K E+ + + E E
Sbjct: 29 RHNKEAEKILLDLNKKDEQAIDLNLEDLP---SEKKNEKIEKVTEKQGDFLEPKEEPKEE 85
Query: 100 DEESIAKNKKTIQEYQNK 117
EES+ ++ ++Q K
Sbjct: 86 PEESLEDIFSSLNDFQEK 103
>ref|NP_223546.1| putative [Helicobacter pylori J99]
Length = 68
Score = 23.5 bits (49), Expect = 2.4
Identities = 12/47 (25%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
Query: 83 LEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDIK 129
L+ +E G + EL + E+ +AK + + E + ++ +K Y K
Sbjct: 2 LKNVEMGA-NFYRELGKLEKQLAKYQSKVLEIKTQMKEIKKQYSQAK 47
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 23.1 bits (48), Expect = 3.1
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 14/70 (20%)
Query: 60 IQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIA 119
+ F+ T+ S+ K+ + E+L + + +L E L + YQN ++
Sbjct: 11 LTFSNAQIMMTFDSQTNAKLSRSNEQLSDMLYKLNESL--------------RIYQNVLS 56
Query: 120 NFQKYYKDIK 129
N Q K+IK
Sbjct: 57 NNQDQLKEIK 66
>ref|NP_223755.1| Pyruvate ferrodoxin oxidoreductase [Helicobacter pylori J99]
Length = 314
Score = 23.1 bits (48), Expect = 3.1
Identities = 16/49 (32%), Positives = 28/49 (56%), Gaps = 4/49 (8%)
Query: 55 IEIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEES 103
I ++D ++ H + K+ E I +EEL++ V E +E L+R EE+
Sbjct: 268 IPVRDYLGAQKRFKHLF-KKENEHI---IEELQKDVNERWEYLQRREEA 312
>ref|NP_223188.1| cag island protein [Helicobacter pylori J99]
Length = 219
Score = 23.1 bits (48), Expect = 3.1
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 65 ENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDE 101
+NC+ + DL K + ++LE+ EL ++E+ +
Sbjct: 95 KNCNRKFYFIDLAKQNERKKDLEKEKKELLNKIEKQK 131
>ref|NP_223039.1| putative [Helicobacter pylori J99]
Length = 186
Score = 23.1 bits (48), Expect = 3.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 64 RENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKK 109
REN + KD + +K EE + + EE E+S +N K
Sbjct: 115 RENLKNRSNRKDAKNFEKLSNIAEEIISKKQEESHHKEDSNDENHK 160
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 23.1 bits (48), Expect = 3.1
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 58 QDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNK 117
+D NRE K+L + D +E P+ ++ E DEE+ + K ++ + +
Sbjct: 220 KDALINRER-----RVKELFRSFDDDDENSVSDPKKDDDSEEDEENEERKKVVSEKDKKR 274
Query: 118 IANFQKYYK 126
+ Q+ +K
Sbjct: 275 VEKVQESFK 283
Score = 23.1 bits (48), Expect = 3.1
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 28 WRGKDDAIPIETRLHKNKLTIISKTDSIEI-QDIQFNREN-----CSHTYTSKDLEKIQK 81
W D + + R + ++SK + IE+ + I+ + CS Y + +
Sbjct: 163 WSRSDSPVRMYLR-EMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKD 221
Query: 82 DLEELEEGVPELFEELERDEESIAKNKK 109
L E V ELF + D+E+ + K
Sbjct: 222 ALINRERRVKELFRSFDDDDENSVSDPK 249
Score = 21.9 bits (45), Expect = 6.9
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 44 NKLTIISKTDSIEIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEES 103
N I++ ++ +DI + DL+K+ E EEG +L+ E
Sbjct: 372 NHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLAPNKLKEILEQ 431
Query: 104 IAKNKKTIQEYQNKIA 119
I + K +NK+A
Sbjct: 432 IKRGKLISDRAKNKMA 447
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 23.1 bits (48), Expect = 3.1
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 1/46 (2%)
Query: 74 KDLEKIQKDLEELEEGVPELFEELERDEESIAKN-KKTIQEYQNKI 118
++LEK +DL GVP E L + KN K+ ++ + KI
Sbjct: 279 QELEKSLEDLMPSVLGVPSYNESLTLAKNRCVKNFKEALEGFTEKI 324
>ref|NP_223516.1| putative [Helicobacter pylori J99]
Length = 218
Score = 22.7 bits (47), Expect = 4.0
Identities = 13/47 (27%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
Query: 79 IQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIAN-FQKY 124
+QK L+E+ + +L++ E + A K + + N+I F KY
Sbjct: 82 LQKRLKEVAPELYDLYQFARASERNDANEFKRLSQSSNEIVKAFAKY 128
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 22.7 bits (47), Expect = 4.0
Identities = 12/28 (42%), Positives = 18/28 (63%)
Query: 76 LEKIQKDLEELEEGVPELFEELERDEES 103
LEKI+ L+E + + LF+ L +DE S
Sbjct: 534 LEKIRGTLKERPDEIATLFKLLIKDEIS 561
Score = 21.9 bits (45), Expect = 6.9
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 64 RENCSHTYTSKDLEKIQKDLEELEEGVPE 92
+++ T+ ++ + +++LEE +EG P+
Sbjct: 280 KKSTKETFDPNNVVRSEQNLEEKKEGAPK 308
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 22.7 bits (47), Expect = 4.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 108 KKTIQEYQNKIANFQKYYKDIKDIDDYS 135
K T+ ++I N+QK Y + + YS
Sbjct: 1588 KNTLYNIGSEIFNYQKVYNNANGVYSYS 1615
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 22.7 bits (47), Expect = 4.0
Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
Query: 31 KDDAIPIETRLHKNKLTIISKTDSIEIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGV 90
KD TRL + + + + + + REN T+ +L K K L + +
Sbjct: 113 KDILAKENTRLLAARDRLTEEKRELTTEKERLKRENTELTHKITELTKENKALTTENDKL 172
Query: 91 PELFEELERDEESIAKNKKTIQE----YQNKIANFQKYYKDIKD 130
L + +S+ + + +Q+ + + N +K + + D
Sbjct: 173 NHQVTALTNERDSLEQERARLQDAHGFLEKRCTNLEKENQRLTD 216
>ref|NP_224104.1| putative [Helicobacter pylori J99]
Length = 203
Score = 22.3 bits (46), Expect = 5.3
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 86 LEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDIKDIDD 133
LE G E F +L I NK+ E+ ++ ++ Y + I++
Sbjct: 131 LERGFKEAFGDLMFSSRVIFDNKEDFYEFLKELNHYGYYELAVNYIEN 178
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 22.3 bits (46), Expect = 5.3
Identities = 13/40 (32%), Positives = 22/40 (54%)
Query: 70 TYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKK 109
T + +E + ++L EGV L +E+ +D+E A KK
Sbjct: 177 TADQESVENFKNARKDLIEGVLNLRKEILKDKELHALIKK 216
>ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN 2 (HAP2) [Helicobacter
pylori J99]
Length = 685
Score = 22.3 bits (46), Expect = 5.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 95 EELERDEESIAKNKKTIQE 113
+ L+RD +S+ K+K+ QE
Sbjct: 625 DSLDRDAKSLTKDKENAQE 643
>ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacter pylori J99]
Length = 560
Score = 22.3 bits (46), Expect = 5.3
Identities = 11/52 (21%), Positives = 26/52 (49%)
Query: 47 TIISKTDSIEIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELE 98
+++ TD+ + I ++ + ++ + E+++E P L+EELE
Sbjct: 100 SMLETTDAFQASCIAIALKSKIRDFDKIPIQTFKPLQEKIKEAYPILYEELE 151
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 22.3 bits (46), Expect = 5.3
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 74 KDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYK 126
K+LE +QK+L+E ++ + E E++E +K+ I+ + + + K K
Sbjct: 429 KELE-LQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAK 480
>ref|NP_222914.1| putative [Helicobacter pylori J99]
Length = 368
Score = 22.3 bits (46), Expect = 5.3
Identities = 16/71 (22%), Positives = 32/71 (44%), Gaps = 5/71 (7%)
Query: 41 LHKNKLTIISKTDSIEIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERD 100
LH N+L ++ + S + REN S K ++ + D++ P + +
Sbjct: 34 LHDNQLGLLIEIPSSSEETSAILRENISKAMQEKGVKALNLDIK-----TPPKPQAPKPT 88
Query: 101 EESIAKNKKTI 111
+++AKN K +
Sbjct: 89 TKNLAKNIKHV 99
>ref|NP_224094.1| UBIQUINONE/MENAQUINONE BIOSYNTHESIS METHLYTRANSFERASE [Helicobacter
pylori J99]
Length = 246
Score = 21.9 bits (45), Expect = 6.9
Identities = 9/27 (33%), Positives = 16/27 (58%)
Query: 109 KTIQEYQNKIANFQKYYKDIKDIDDYS 135
K +E +NK + Q KD+K +++ S
Sbjct: 101 KKCEELENKASFIQAQAKDLKGVENNS 127
>ref|NP_224007.1| UDP-N-ACETYLGLUCOSAMINE ACYLTRANSFERASE [Helicobacter pylori J99]
Length = 270
Score = 21.9 bits (45), Expect = 6.9
Identities = 13/45 (28%), Positives = 19/45 (41%)
Query: 63 NRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKN 107
NR SKD++ I + L +P L E + + E A N
Sbjct: 194 NRHRMRQLLESKDIDFIHALYKRLFRPIPSLRESAKLELEEHANN 238
>ref|NP_224124.1| L-SERYL-TRNA(SER) SELENIUM TRANSFERASE [Helicobacter pylori J99]
Length = 390
Score = 21.6 bits (44), Expect = 9.0
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 6 KVLLTLLIVISLGKGLNSLISAWRGKDDAIPIETRLHKNKLTIISK 51
K+ LTLL ++AW + I I LH+ K ++ K
Sbjct: 258 KITLTLLF---------HSLNAWVNHQEEITIHALLHQTKDALLQK 294
>ref|NP_223882.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 703
Score = 21.6 bits (44), Expect = 9.0
Identities = 14/51 (27%), Positives = 25/51 (48%)
Query: 68 SHTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKI 118
++ +K + IQK L EG+P L + + +I +K+T E K+
Sbjct: 168 NYAIINKAYQIIQKALTANGEGIPVLSNTTTKLDFTINGDKRTGGEPNKKL 218
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 21.6 bits (44), Expect = 9.0
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 49 ISKTDSIEIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNK 108
+ KT + I+D + N + ++K+Q + EG E E E+ + K
Sbjct: 96 LMKTLLVTIRDTGSDTNNGKENEIEEVVKKLQAITSQNLEGAKETSGTKEAPEKEVKKEN 155
Query: 109 K 109
K
Sbjct: 156 K 156
>ref|NP_223641.1| putative [Helicobacter pylori J99]
Length = 268
Score = 21.6 bits (44), Expect = 9.0
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 56 EIQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQ 115
+I I + N ++++EK QKDL++ V +L L +D KT+ + Q
Sbjct: 62 KIDTINQVKPNDETKSVNENIEKTQKDLDDFNALVQKL-PNLPKD------FNKTLIKPQ 114
Query: 116 NKIANFQKYYKDIKD 130
+ N+ +D K+
Sbjct: 115 SPFFNYNTANEDEKN 129
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 21.6 bits (44), Expect = 9.0
Identities = 8/26 (30%), Positives = 15/26 (56%)
Query: 35 IPIETRLHKNKLTIISKTDSIEIQDI 60
IPI TR+H + +I K ++++
Sbjct: 712 IPISTRIHAKDVVLIYKKMPFPLENL 737
>ref|NP_222966.1| putative [Helicobacter pylori J99]
Length = 152
Score = 21.6 bits (44), Expect = 9.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 50 SKTDSIEIQDIQFNRENCSHTYTSKDLEK 78
S + +EI+ + F + S T+ LEK
Sbjct: 28 SSDEFLEIKQVSFQSKTWSATFNDTTLEK 56
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.132 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,205
Number of Sequences: 1491
Number of extensions: 6993
Number of successful extensions: 71
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 59
length of query: 140
length of database: 494,079
effective HSP length: 69
effective length of query: 71
effective length of database: 391,200
effective search space: 27775200
effective search space used: 27775200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 44 (21.6 bits)