BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645501|ref|NP_207676.1| Holliday junction DNA
helicase (ruvA) [Helicobacter pylori 26695]
(183 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223533.1| HOLLIDAY JUNCTION DNA HELICASE [Helicobact... 331 8e-93
ref|NP_223459.1| putative lipopolysaccharide biosynthesis p... 26 0.74
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 24 2.1
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 23 3.7
ref|NP_223604.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223062.1| multi-drug resistance protein [Helicobacte... 23 4.8
ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99] 23 4.8
ref|NP_223942.1| 50S RIBOSOMAL PROTEIN L6 [Helicobacter pyl... 23 6.2
ref|NP_223509.1| phosphoheptose isomerase [Helicobacter pyl... 22 8.2
>ref|NP_223533.1| HOLLIDAY JUNCTION DNA HELICASE [Helicobacter pylori J99]
Length = 183
Score = 331 bits (848), Expect = 8e-93
Identities = 176/183 (96%), Positives = 179/183 (97%)
Query: 1 MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTAALLEAGQKARLKILQVIKEDAHLLY 60
MIVGLIGVVEKISALE HIEVQGVVYGVQVSMRTAALL+ GQKARLKILQVIKEDAHLLY
Sbjct: 1 MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALLQTGQKARLKILQVIKEDAHLLY 60
Query: 61 GFLEEGEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKLA 120
GFLEE EKILFERLLKINGVGGRIALAILSSFSPNEFE+IIATKEVKRLQQVPGIGKKLA
Sbjct: 61 GFLEESEKILFERLLKINGVGGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLA 120
Query: 121 DKIMVDLIGFFIQDENRPARNEVFLALESLGFKSAEINQVLKTLKPNLSIEAAIKEALQQ 180
DKIMVDLIGFFIQDENRPARNEVFLALESLGFKSAEIN VLKTLKP+LSIEAAIKEALQQ
Sbjct: 121 DKIMVDLIGFFIQDENRPARNEVFLALESLGFKSAEINPVLKTLKPHLSIEAAIKEALQQ 180
Query: 181 LRS 183
LRS
Sbjct: 181 LRS 183
>ref|NP_223459.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 292
Score = 25.8 bits (55), Expect = 0.74
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 34/128 (26%)
Query: 75 LKINGVGGRIALAILSSFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQD 134
LK+ G+ I AI S SP + +I + L MV+ + F ++
Sbjct: 41 LKLQGISYEIFDAIYSKISPTQLHPLIL--------------EHLHPSFMVEDLLAFCKN 86
Query: 135 ENRP--ARNEVFLALE------------------SLGFKSAEINQVLKTLKPNLSIEAAI 174
+ P A F AL+ SL K E+N+ + L+ +++++
Sbjct: 87 KKHPPCALKNFFYALKHCGKRMGFGELGCYASHYSLWQKCIELNEAICILEDDITLKEHF 146
Query: 175 KEALQQLR 182
KE+L+ R
Sbjct: 147 KESLEFCR 154
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 24.3 bits (51), Expect = 2.1
Identities = 20/89 (22%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 90 SSFSPNEFESIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDENRPARNEVFLALES 149
+S S N ++++ +KRL +L D +M+ L+ +IQ++N+ A + + ALE+
Sbjct: 105 TSLSKNTLKALLKGL-IKRLSNDRFSQNELNDILMLSLLDGYIQNKNK-AFSPLLDALET 162
Query: 150 LGFKSAEINQVLKTLKPNLSIEAAIKEAL 178
+ ++ + ++L+ + ++E L
Sbjct: 163 KFTRLEKLERERRSLEDKKRFQKDLEERL 191
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 23.5 bits (49), Expect = 3.7
Identities = 12/31 (38%), Positives = 20/31 (63%)
Query: 143 VFLALESLGFKSAEINQVLKTLKPNLSIEAA 173
V + SLG + AEIN+ +K ++ N S++ A
Sbjct: 169 VIKEVNSLGSQIAEINKRIKEVENNKSLKHA 199
>ref|NP_223604.1| putative [Helicobacter pylori J99]
Length = 218
Score = 23.5 bits (49), Expect = 3.7
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 95 NEFESIIATKEVKRLQ---QVPGIGKKLADKIMVDLIGFFIQ----------DENRPARN 141
NE I+ KE++RL QV G +L K + ++Q D+N+ + N
Sbjct: 10 NESGFILIEKELERLNVTAQVKEDGIELKGK-NTEQARIYLQTLFNSNIVELDDNKKSAN 68
Query: 142 EVFLALESLGFKSA 155
V L+SLG K A
Sbjct: 69 AVIERLKSLGLKMA 82
>ref|NP_223062.1| multi-drug resistance protein [Helicobacter pylori J99]
Length = 551
Score = 23.1 bits (48), Expect = 4.8
Identities = 27/106 (25%), Positives = 52/106 (48%), Gaps = 16/106 (15%)
Query: 9 VEKISALEVHIEVQGVVYGVQ-VSMRTAALLEAGQKARLKILQVIKEDAHLLY------G 61
++K AL+ V+ + +G++ V A L GQ+ R+ I + + +DA +L
Sbjct: 446 LKKAQALDF---VEKMPHGIESVLDEFGANLSGGQRQRIAIARALYKDAQVLIFDEATSA 502
Query: 62 FLEEGEKILFERLLKINGVGGRIALAILSSFSPNEFESIIATKEVK 107
E+ + + +L++ + L IL S +P+ + +ATK VK
Sbjct: 503 LDNHTEESVKQSILELK----QNRLIILISHNPSTLK--LATKHVK 542
>ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99]
Length = 191
Score = 23.1 bits (48), Expect = 4.8
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 29 QVSMRTAALLEAGQKARLKILQVIKEDAHLLYGFLEEGEKILFERLLKINGVGGRIALAI 88
++++ +++A A ++V KE A L +G ++ E+L ++ G +
Sbjct: 87 KIALDLLPVIDALLGAHKSAVEVDKESA------LTKGLELTMEKLHEVLARHGIEGIEC 140
Query: 89 LSSFSPNEFESIIATKEVKR 108
L F PN +I+ K ++
Sbjct: 141 LEEFDPNFHNAIMQVKSEEK 160
>ref|NP_223942.1| 50S RIBOSOMAL PROTEIN L6 [Helicobacter pylori J99]
Length = 178
Score = 22.7 bits (47), Expect = 6.2
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 71 FERLLKINGVGGRIAL 86
F + L++NGVG ++AL
Sbjct: 83 FSKTLEVNGVGYKVAL 98
>ref|NP_223509.1| phosphoheptose isomerase [Helicobacter pylori J99]
Length = 192
Score = 22.3 bits (46), Expect = 8.2
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 39 EAGQKARLKILQVIKEDAHLLYGFLEEGEKIL 70
EA +K+ + +K+ HLL LE KIL
Sbjct: 15 EALEKSLESLQDALKQSVHLLIETLENQGKIL 46
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.139 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,223
Number of Sequences: 1491
Number of extensions: 7143
Number of successful extensions: 27
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 9
length of query: 183
length of database: 494,079
effective HSP length: 72
effective length of query: 111
effective length of database: 386,727
effective search space: 42926697
effective search space used: 42926697
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)