BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645509|ref|NP_207684.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(174 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223542.1| putative [Helicobacter pylori J99] 356 e-100
ref|NP_223612.1| GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helico... 24 2.6
ref|NP_223494.1| putative [Helicobacter pylori J99] 24 2.6
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 24 2.6
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 23 4.4
ref|NP_223467.1| putative [Helicobacter pylori J99] 23 4.4
ref|NP_223299.1| putative Outer membrane protein [Helicobac... 23 4.4
ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori... 22 7.5
ref|NP_223529.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [... 22 9.8
>ref|NP_223542.1| putative [Helicobacter pylori J99]
Length = 174
Score = 356 bits (913), Expect = e-100
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 1 MPQIQSSHSNHFDFTIDTADRTKLLMSYLVVPTTANFNNVMHGGELLNLLDKVAYVCSTR 60
MPQIQSSHSNHFDFTIDTADRTKLLMSYLVVPTTANFNNVMHGGELLNLLDKVAYVCSTR
Sbjct: 1 MPQIQSSHSNHFDFTIDTADRTKLLMSYLVVPTTANFNNVMHGGELLNLLDKVAYVCSTR 60
Query: 61 YCAKGTVTLSVDGVTFKYPIPVGNLLTFLASINYVGNTSCEVGIKVLSEDIKTREITHTN 120
YCAKGTVTLSVDGVTFKYPIPVGNLLTFLASINYVGNTSCEVGIKVLSEDIKTREITHTN
Sbjct: 61 YCAKGTVTLSVDGVTFKYPIPVGNLLTFLASINYVGNTSCEVGIKVLSEDIKTREITHTN 120
Query: 121 SCYFTMVAVENGKPTPMPKYEPKTEVEIRRYEGALKRKEMRTRGYLKSGKHEGV 174
SCYFTMVAVENGKPTPMPKYEPKTEVEIRRYEGALKRKEMRTRGYLKSGKHEGV
Sbjct: 121 SCYFTMVAVENGKPTPMPKYEPKTEVEIRRYEGALKRKEMRTRGYLKSGKHEGV 174
>ref|NP_223612.1| GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helicobacter pylori J99]
Length = 298
Score = 23.9 bits (50), Expect = 2.6
Identities = 11/45 (24%), Positives = 24/45 (52%)
Query: 25 LMSYLVVPTTANFNNVMHGGELLNLLDKVAYVCSTRYCAKGTVTL 69
L +Y +V ++F N++ + +++ ++ Y+ R AKG L
Sbjct: 235 LPAYDLVMLCSHFFNILDARKAISVAERQNYILQIRDLAKGCAVL 279
>ref|NP_223494.1| putative [Helicobacter pylori J99]
Length = 205
Score = 23.9 bits (50), Expect = 2.6
Identities = 11/24 (45%), Positives = 14/24 (57%)
Query: 136 PMPKYEPKTEVEIRRYEGALKRKE 159
P K PKT+ IR+ E KR+E
Sbjct: 24 PFSKQTPKTKERIRQEEANKKREE 47
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 23.9 bits (50), Expect = 2.6
Identities = 10/44 (22%), Positives = 23/44 (51%)
Query: 129 VENGKPTPMPKYEPKTEVEIRRYEGALKRKEMRTRGYLKSGKHE 172
+E KP P PK +P+ + +++ K +++ + ++ K E
Sbjct: 110 IEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEE 153
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 23.1 bits (48), Expect = 4.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 133 KPTPMPKYEPKTE 145
KP P PK EPK E
Sbjct: 114 KPEPKPKPEPKVE 126
Score = 22.7 bits (47), Expect = 5.7
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 133 KPTPMPKYEPKTEVEIRRYEGALKRKEMRTRGYLKSGKHE 172
KP P PK EPK + E + E K++E + + K E
Sbjct: 108 KPKPKPKPEPKPKPEPKVEEP--KKEEPKEEPKKEEAKEE 145
Score = 22.3 bits (46), Expect = 7.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 113 TREITHTNSCYFTMVAVENGKPTPMPKYEPKTE 145
T + N+ T E+ KP PK +PK E
Sbjct: 52 TMSLASINTNSNTKTNAESAKPKEEPKEKPKKE 84
>ref|NP_223467.1| putative [Helicobacter pylori J99]
Length = 205
Score = 23.1 bits (48), Expect = 4.4
Identities = 20/69 (28%), Positives = 30/69 (42%), Gaps = 4/69 (5%)
Query: 11 HFDFTIDTADRTKLLMSYLVVPTTANFNNV-MHGGELLNLLDKVAYVCSTRYCAKGTVTL 69
H+D D+A +K L P A ++V M ++ +L V + C KG TL
Sbjct: 54 HYDHVWDSAQLSKALKG---TPIYAPKDDVFMLENDIFHLGMPVFSPTFSVPCNKGCTTL 110
Query: 70 SVDGVTFKY 78
+ T KY
Sbjct: 111 EIANTTIKY 119
>ref|NP_223299.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 307
Score = 23.1 bits (48), Expect = 4.4
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 93 NYVGNTSCEVGIKV 106
NY+G +S E+G+KV
Sbjct: 258 NYLGGSSVELGVKV 271
>ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 415
Score = 22.3 bits (46), Expect = 7.5
Identities = 13/32 (40%), Positives = 18/32 (55%), Gaps = 1/32 (3%)
Query: 111 IKTREITHTNSCYFTMVAVENGKPTPMPKYEP 142
I T E+T TN T+++VEN P M + P
Sbjct: 229 IPTAEVTLTNLYNDTIISVEN-LPIKMTAHTP 259
>ref|NP_223529.1| CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE [Helicobacter pylori J99]
Length = 157
Score = 21.9 bits (45), Expect = 9.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 140 YEPKTEVEIRRYEGALKRKEMRTRG 164
Y PK+ +++ ++ GAL K + G
Sbjct: 72 YNPKSVIKLAQFRGALSLKILERIG 96
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,760
Number of Sequences: 1491
Number of extensions: 6878
Number of successful extensions: 25
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 14
length of query: 174
length of database: 494,079
effective HSP length: 72
effective length of query: 102
effective length of database: 386,727
effective search space: 39446154
effective search space used: 39446154
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)