BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645510|ref|NP_207685.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(90 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223549.1| putative [Helicobacter pylori J99] 179 9e-48
ref|NP_223543.1| putative [Helicobacter pylori J99] 84 5e-19
ref|NP_223956.1| 50S RIBOSOMAL PROTEIN L4 [Helicobacter pyl... 25 0.28
ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUB... 25 0.28
ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter ... 25 0.36
ref|NP_223361.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 24 0.47
ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori... 23 1.1
ref|NP_223774.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 22 3.1
ref|NP_223831.1| aspartate-semialdehyde dehydrogenase [Heli... 21 4.0
ref|NP_222931.1| putative PEPTIDE METHIONINE SULFOXIDE REDU... 21 4.0
ref|NP_222865.1| putative [Helicobacter pylori J99] 21 4.0
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 21 5.2
ref|NP_223722.1| FERROCHELATASE [Helicobacter pylori J99] 21 5.2
ref|NP_223577.1| RECOMBINATION PROTEIN [Helicobacter pylori... 21 5.2
ref|NP_223447.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylo... 21 5.2
ref|NP_223498.1| putative [Helicobacter pylori J99] 20 6.9
ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobact... 20 6.9
ref|NP_223872.1| putative [Helicobacter pylori J99] 20 9.0
ref|NP_223739.1| putative Outer membrane protein [Helicobac... 20 9.0
ref|NP_223489.1| putative spermidine synthase [Helicobacter... 20 9.0
ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 20 9.0
ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 20 9.0
>ref|NP_223549.1| putative [Helicobacter pylori J99]
Length = 90
Score = 179 bits (454), Expect = 9e-48
Identities = 88/90 (97%), Positives = 88/90 (97%)
Query: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECH 60
MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPL PKYKDHPLKG LKDFRECH
Sbjct: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLEPKYKDHPLKGALKDFRECH 60
Query: 61 LKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
LKPDLLLVYQIKKQENTLFLVRLGSHSELF
Sbjct: 61 LKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
>ref|NP_223543.1| putative [Helicobacter pylori J99]
Length = 100
Score = 84.0 bits (206), Expect = 5e-19
Identities = 49/91 (53%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 1 MLTIETSKKFDKDLKILVKNG-FDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFREC 59
ML IE KKF KDLK + N +L++ VV NL + PL ++KDH L G K RE
Sbjct: 1 MLEIELKKKFTKDLKKHILNQKIELEVFDLVVENLRNQIPLDKRFKDHALSGTYKGCRER 60
Query: 60 HLKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
H+KPD+LLVY++K N L LVRLGSHSELF
Sbjct: 61 HIKPDVLLVYRVK--GNVLTLVRLGSHSELF 89
>ref|NP_223956.1| 50S RIBOSOMAL PROTEIN L4 [Helicobacter pylori J99]
Length = 215
Score = 25.0 bits (53), Expect = 0.28
Identities = 22/80 (27%), Positives = 40/80 (49%), Gaps = 10/80 (12%)
Query: 19 KNGFDLKLLYKVVGNLATEQPLAPKYKDHPL--------KGGLKDFRECHLKPDLLLVYQ 70
K ++LK+ K LA E L K + + L KG ++D + HL + ++Q
Sbjct: 93 KRNYNLKI-NKKQKRLALEYALEEKAQANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQ 151
Query: 71 IKKQENTLFL-VRLGSHSEL 89
+Q +TLF+ + + ++EL
Sbjct: 152 ALEQRDTLFVCLNMDEYTEL 171
>ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT) [Helicobacter
pylori J99]
Length = 409
Score = 25.0 bits (53), Expect = 0.28
Identities = 11/31 (35%), Positives = 19/31 (60%)
Query: 9 KFDKDLKILVKNGFDLKLLYKVVGNLATEQP 39
KF K+L L+ N F +K L +++ ++ QP
Sbjct: 211 KFSKELNRLIPNDFKVKTLGELITWISGSQP 241
>ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter pylori J99]
Length = 533
Score = 24.6 bits (52), Expect = 0.36
Identities = 11/35 (31%), Positives = 21/35 (59%)
Query: 49 LKGGLKDFRECHLKPDLLLVYQIKKQENTLFLVRL 83
++G L+ F + +LK L++ +KK +NT + L
Sbjct: 445 IEGFLERFDKANLKEKSLMLESLKKSKNTAIALEL 479
>ref|NP_223361.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 381
Score = 24.3 bits (51), Expect = 0.47
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 52 GLKDFRECHLKPDLLL--VYQIKK 73
G+KDF + KP+LLL +Y+ KK
Sbjct: 91 GVKDFFQKPFKPELLLESIYRTKK 114
>ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori J99]
Length = 519
Score = 23.1 bits (48), Expect = 1.1
Identities = 18/55 (32%), Positives = 24/55 (42%), Gaps = 5/55 (9%)
Query: 40 LAPKYKD----HPLKGGLKDFRECHLKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
L P+Y+ P+ GG + F EC L + I KQ+ L LV LF
Sbjct: 25 LKPRYQKIALFSPISGGCEGFGECESLSSLEVHSAIDKQK-ALELVSTAQEELLF 78
>ref|NP_223774.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 133
Score = 21.6 bits (44), Expect = 3.1
Identities = 13/31 (41%), Positives = 20/31 (63%), Gaps = 3/31 (9%)
Query: 7 SKKFDKDLKILVKNGFDLKLLY-KVVGNLAT 36
SKK+DKD ++ ++ D +L Y KV+ L T
Sbjct: 90 SKKYDKDTRVSIR--ADKRLTYDKVIYLLKT 118
>ref|NP_223831.1| aspartate-semialdehyde dehydrogenase [Helicobacter pylori J99]
Length = 346
Score = 21.2 bits (43), Expect = 4.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 8 KKFDKDLKILVKNGFDLKLLYKVVGN 33
+ + L I + FDLK +Y+V+ N
Sbjct: 251 RSHSESLSIAFEKEFDLKEVYEVLKN 276
>ref|NP_222931.1| putative PEPTIDE METHIONINE SULFOXIDE REDUCTASE [Helicobacter
pylori J99]
Length = 359
Score = 21.2 bits (43), Expect = 4.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 25 KLLYKVVGNLATEQPLAPKYKDHPLKG 51
KL Y+V N TE+P +Y + +G
Sbjct: 215 KLQYEVTQNKHTEKPFENEYYNKEEEG 241
>ref|NP_222865.1| putative [Helicobacter pylori J99]
Length = 198
Score = 21.2 bits (43), Expect = 4.0
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 34 LATEQPLAPKYKDHPLKGGLKDFRECHLK 62
LA + P P+ L+GG + +LK
Sbjct: 16 LARDNPFEPEINSKNLQGGFSGIYDDYLK 44
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 37 EQPLAPKYKDHPLKGGLKDFRECHLK 62
E+ L+PK K +P+ + + C LK
Sbjct: 828 EEVLSPKLKFNPINEDIGLYTMCALK 853
>ref|NP_223722.1| FERROCHELATASE [Helicobacter pylori J99]
Length = 335
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 10 FDKDLKILVKNGFDLKLLYKVVGNLATEQ 38
FD + +KN F K++ K++ N E+
Sbjct: 45 FDDPFILTIKNNFMRKMVGKMIVNSRIEK 73
>ref|NP_223577.1| RECOMBINATION PROTEIN [Helicobacter pylori J99]
Length = 193
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 25 KLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFREC 59
K +K+ +L E P H L+ L++ + C
Sbjct: 27 KSAFKMAYHLGLENPYLALKITHALRNALENLKTC 61
>ref|NP_223447.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylori J99]
Length = 174
Score = 20.8 bits (42), Expect = 5.2
Identities = 10/18 (55%), Positives = 13/18 (71%)
Query: 2 LTIETSKKFDKDLKILVK 19
L+I KKF+K+LK L K
Sbjct: 152 LSILKRKKFEKELKELQK 169
>ref|NP_223498.1| putative [Helicobacter pylori J99]
Length = 245
Score = 20.4 bits (41), Expect = 6.9
Identities = 7/20 (35%), Positives = 16/20 (80%)
Query: 66 LLVYQIKKQENTLFLVRLGS 85
+L+ ++KQ+ LFL+++G+
Sbjct: 29 ILLKVLEKQDKDLFLLQVGN 48
>ref|NP_223351.1| putative HYDANTOIN UTILIZATION [Helicobacter pylori J99]
Length = 712
Score = 20.4 bits (41), Expect = 6.9
Identities = 7/16 (43%), Positives = 12/16 (74%)
Query: 32 GNLATEQPLAPKYKDH 47
G +AT++P+ P K+H
Sbjct: 624 GVVATQKPVIPVEKEH 639
>ref|NP_223872.1| putative [Helicobacter pylori J99]
Length = 153
Score = 20.0 bits (40), Expect = 9.0
Identities = 15/41 (36%), Positives = 19/41 (45%)
Query: 41 APKYKDHPLKGGLKDFRECHLKPDLLLVYQIKKQENTLFLV 81
APK P++G K RE P L + K+E FLV
Sbjct: 22 APKEDLAPIEGAEKIEREKKDAPTENLPFNPDKRETYGFLV 62
>ref|NP_223739.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 511
Score = 20.0 bits (40), Expect = 9.0
Identities = 10/23 (43%), Positives = 12/23 (51%)
Query: 46 DHPLKGGLKDFRECHLKPDLLLV 68
+HPLKG L + P LL V
Sbjct: 279 NHPLKGSLTLKGDIEQSPKLLKV 301
>ref|NP_223489.1| putative spermidine synthase [Helicobacter pylori J99]
Length = 262
Score = 20.0 bits (40), Expect = 9.0
Identities = 6/16 (37%), Positives = 14/16 (87%)
Query: 15 KILVKNGFDLKLLYKV 30
++L+ +GFDL+L +++
Sbjct: 75 EVLIVDGFDLELAHQL 90
>ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 439
Score = 20.0 bits (40), Expect = 9.0
Identities = 7/15 (46%), Positives = 11/15 (72%)
Query: 69 YQIKKQENTLFLVRL 83
Y + KQ+N FL+R+
Sbjct: 24 YIVAKQQNKPFLIRI 38
>ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 742
Score = 20.0 bits (40), Expect = 9.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 9 KFDKDLKILVKNGFDLKL 26
KF+KDL ++ + DL L
Sbjct: 3 KFNKDLNEVLSHALDLAL 20
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.143 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,015
Number of Sequences: 1491
Number of extensions: 4498
Number of successful extensions: 24
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of query: 90
length of database: 494,079
effective HSP length: 66
effective length of query: 24
effective length of database: 395,673
effective search space: 9496152
effective search space used: 9496152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 40 (20.0 bits)