BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645511|ref|NP_207686.1| hypothetical protein
[Helicobacter pylori 26695]
(95 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223550.1| putative [Helicobacter pylori J99] 183 6e-49
ref|NP_223548.1| putative [Helicobacter pylori J99] 49 1e-08
ref|NP_224153.1| putative [Helicobacter pylori J99] 30 0.011
ref|NP_223788.1| putative [Helicobacter pylori J99] 28 0.025
ref|NP_224090.1| putative [Helicobacter pylori J99] 27 0.072
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 27 0.094
ref|NP_223621.1| putative cation efflux system protein [Hel... 26 0.12
ref|NP_223038.1| putative [Helicobacter pylori J99] 26 0.16
ref|NP_222962.1| putative [Helicobacter pylori J99] 26 0.16
ref|NP_223206.1| cag island protein [Helicobacter pylori J99] 25 0.27
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 25 0.27
ref|NP_223830.1| putative [Helicobacter pylori J99] 24 0.47
ref|NP_224046.1| putative PROTEASE IV [Helicobacter pylori ... 24 0.61
ref|NP_223645.1| putative [Helicobacter pylori J99] 23 0.79
ref|NP_223770.1| putative [Helicobacter pylori J99] 23 1.0
ref|NP_223631.1| GTPase in circumferential ring formation [... 23 1.0
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 23 1.0
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 23 1.4
ref|NP_223763.1| GAMMA-GLUTAMYLTRANSPEPTIDASE [Helicobacter... 23 1.4
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 23 1.4
ref|NP_222831.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223527.1| catalase [Helicobacter pylori J99] 22 1.8
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 22 1.8
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 22 1.8
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 22 1.8
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 2.3
ref|NP_224119.1| putative ferredoxin-like protein [Helicoba... 22 2.3
ref|NP_223487.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT A [Heli... 22 2.3
ref|NP_223338.1| putative LIPOPOLYSACCHARIDE BIOSYNTHESIS P... 22 2.3
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 22 2.3
ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ... 22 3.0
ref|NP_223446.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223222.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [H... 22 3.0
ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 3.0
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 22 3.0
ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 21 3.9
ref|NP_223680.1| putative POLYSACCHARIDE BIOSYNTHESIS PROTE... 21 3.9
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 21 3.9
ref|NP_223069.1| putative [Helicobacter pylori J99] 21 3.9
ref|NP_223063.1| putative [Helicobacter pylori J99] 21 3.9
ref|NP_224100.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_223833.1| ADP-HEPTOSE--LPS HEPTOSYLTRANSFERASE II [H... 21 5.2
ref|NP_223605.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_223475.1| putative osmoprotection binding protein [H... 21 5.2
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 20 6.7
ref|NP_223994.1| putative [Helicobacter pylori J99] 20 6.7
ref|NP_223641.1| putative [Helicobacter pylori J99] 20 6.7
ref|NP_223093.1| putative [Helicobacter pylori J99] 20 6.7
ref|NP_222912.1| putative [Helicobacter pylori J99] 20 6.7
ref|NP_223915.1| putative [Helicobacter pylori J99] 20 8.8
ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter p... 20 8.8
>ref|NP_223550.1| putative [Helicobacter pylori J99]
Length = 95
Score = 183 bits (464), Expect = 6e-49
Identities = 90/95 (94%), Positives = 93/95 (97%)
Query: 1 MPNTTNKDYTKYSQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTENG 60
MPNTTNKDYTKYSQ+QLF+FLNSIK KQKRALEKLKEIQ QKQRIKKALQFKAL+LTENG
Sbjct: 1 MPNTTNKDYTKYSQKQLFNFLNSIKAKQKRALEKLKEIQTQKQRIKKALQFKALHLTENG 60
Query: 61 YTIEEEREILARAKDTKNRLCFKSIEDFKKHCENL 95
YTIEEEREILARAKDTKNRLCFKSIEDFKKHCENL
Sbjct: 61 YTIEEEREILARAKDTKNRLCFKSIEDFKKHCENL 95
>ref|NP_223548.1| putative [Helicobacter pylori J99]
Length = 83
Score = 49.3 bits (116), Expect = 1e-08
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 10/68 (14%)
Query: 1 MPNTTNKDYTKYSQRQLFSFLNSIKTKQKRALE---------KLKEIQAQKQRIKKALQF 51
MPNTTNKDYTKYSQ+QLF+ +N ++ K +A + ++ ++ Q Q I+ AL
Sbjct: 1 MPNTTNKDYTKYSQKQLFNLINQLEQKISQAFDDKRGCCLGHEIPNLETQ-QAIRGALNG 59
Query: 52 KALNLTEN 59
+ L + E+
Sbjct: 60 ENLEVIED 67
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 29.6 bits (65), Expect = 0.011
Identities = 24/86 (27%), Positives = 38/86 (43%), Gaps = 6/86 (6%)
Query: 7 KDYTKYSQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTENGYTIEEE 66
KD+ Y ++L N I + E+LKE + +K K LQ +A L +
Sbjct: 171 KDFLSYQHKELEHKKNQIIKRLNAQKERLKE-KLEKLEDPKTLQLEAKELQTQASLLLTY 229
Query: 67 REILARAKDTKNRLCFKSIEDFKKHC 92
+ ++ R +NR+ K ED K C
Sbjct: 230 QHLINR---RENRVILKDFED--KEC 250
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 28.5 bits (62), Expect = 0.025
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 14 QRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKA-----LQFKALNLTENGYTIEEERE 68
Q++ L ++ + +++L + +A+ +R+K+ + KA N + +E ERE
Sbjct: 110 QQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEKLELERE 169
Query: 69 ILARAKDTKNRLCFKSIED 87
+ +A KN L FK E+
Sbjct: 170 KIEKALHEKNELKFKQQEE 188
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 26.9 bits (58), Expect = 0.072
Identities = 15/28 (53%), Positives = 21/28 (74%), Gaps = 2/28 (7%)
Query: 29 KRALEKLKEIQAQKQRIKKALQFKALNL 56
K AL+ LKE++ K+R+KKAL F L+L
Sbjct: 467 KNALKGLKELE--KKRLKKALSFFDLSL 492
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 26.6 bits (57), Expect = 0.094
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 23/84 (27%)
Query: 16 QLFSFLNSIKTKQKRALEK-----------------LKEIQAQKQRIKKALQFKALNL-- 56
Q SF N IK +Q+ K L+++ +KQ+IK+ + ++A L
Sbjct: 22 QFGSFFNEIKKEQEEVAAKEDALKARKKLLNNTHDFLEDLVFRKQKIKELVDYRAKVLLD 81
Query: 57 TENGYTIEEEREILARAKDTKNRL 80
EN Y E+E A K+T+ ++
Sbjct: 82 LENKYKKEKE----ALEKETRGKI 101
>ref|NP_223621.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 1019
Score = 26.2 bits (56), Expect = 0.12
Identities = 16/67 (23%), Positives = 33/67 (48%)
Query: 23 SIKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTENGYTIEEEREILARAKDTKNRLCF 82
+I++ K+ ++++K I A+ + L LN T+ + ++E + KD
Sbjct: 575 NIESAIKKHVKEVKSIVARTGSDELGLDLGGLNQTDTFISFIPKKEWSVKTKDELLEKIM 634
Query: 83 KSIEDFK 89
S++DFK
Sbjct: 635 DSLKDFK 641
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 25.8 bits (55), Expect = 0.16
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 7 KDYTKYSQRQLFSFLNSIKTKQKRAL--EKLKEIQAQ------KQRIKKALQFKALNLTE 58
KD+ + ++ + N K KRAL EK ++I+ Q K+ IK+ +Q N E
Sbjct: 8 KDFLDFCKQTIHKNSNEAFQKTKRALFKEKSQKIREQAVKIVEKRLIKENMQLSDFNEEE 67
Query: 59 NGYTIE-EEREILAR--AKDTKNR 79
E EE+ +L + AK+ K +
Sbjct: 68 LKIMFEAEEKRLLEQIHAKELKEK 91
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 25.8 bits (55), Expect = 0.16
Identities = 23/69 (33%), Positives = 34/69 (48%), Gaps = 6/69 (8%)
Query: 24 IKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTENGYTIEEEREIL---ARAKDTKNRL 80
+ K+K EKLK + A K+ K LQ + +N IEE IL +AKD+K
Sbjct: 69 LNKKEKEIDEKLKNL-AAKEEAFKTLQTEEKKRLKN--LIEENEGILREIKQAKDSKIGE 125
Query: 81 CFKSIEDFK 89
+ ++D K
Sbjct: 126 TYSKMKDSK 134
>ref|NP_223206.1| cag island protein [Helicobacter pylori J99]
Length = 381
Score = 25.0 bits (53), Expect = 0.27
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 25 KTKQKRALEKLKEIQAQKQRIKKALQ 50
+ KQK A +LK I+AQ +KA+Q
Sbjct: 39 QAKQKTAQAELKAIEAQSNAKEKAIQ 64
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 25.0 bits (53), Expect = 0.27
Identities = 11/21 (52%), Positives = 16/21 (75%)
Query: 27 KQKRALEKLKEIQAQKQRIKK 47
+QK+ALEK KE + Q Q+ +K
Sbjct: 143 EQKKALEKEKEAKEQAQKAQK 163
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 24.3 bits (51), Expect = 0.47
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 27 KQKRALEKLKEIQAQKQRIKKALQFKALNLTENGYTIEEEREILARAKDTKNRLCFKSIE 86
KQK EK K Q +KQ+ ++ Q + T N +E+E++ + K N +
Sbjct: 142 KQKTEQEKQKTEQ-EKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVN 200
Query: 87 DFKKHCE 93
+++C+
Sbjct: 201 KAEQNCQ 207
>ref|NP_224046.1| putative PROTEASE IV [Helicobacter pylori J99]
Length = 292
Score = 23.9 bits (50), Expect = 0.61
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 7 KDYTKYSQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKK 47
KDY +++ ++FS ++K K + +K+ Q + + K
Sbjct: 214 KDYKDFAEGKVFSAQKALKLKLIDKISTIKQAQDRLMELSK 254
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 23.5 bits (49), Expect = 0.79
Identities = 17/55 (30%), Positives = 30/55 (53%), Gaps = 14/55 (25%)
Query: 21 LNSIKTKQK---RALEKLKEIQAQKQRIKKALQFKALNLTENGYTIEEEREILAR 72
+ KT+ K +A+E LKE+QA+++ +K + Y +E+EILA+
Sbjct: 439 IKGAKTRYKANIKAIELLKELQAKQEILK-----------GDYYATLKEQEILAQ 482
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 23.1 bits (48), Expect = 1.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 25 KTKQKRALEKLKEIQAQKQRIKKALQF 51
KT++K +E K++ QK+ ++AL F
Sbjct: 190 KTQEKAKVEFDKDLSKQKEIFQEALSF 216
>ref|NP_223631.1| GTPase in circumferential ring formation [Helicobacter pylori J99]
Length = 385
Score = 23.1 bits (48), Expect = 1.0
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 15/61 (24%)
Query: 27 KQKRALEKLKEIQAQKQRIKKALQFKALNLTENGYTIEEEREILARAKDTKNRLCFKSIE 86
K+KRA E LKE++ I I ++ +L K+ C++ ++
Sbjct: 160 KRKRAEEGLKELEQSSDSI---------------LVIPNDKILLTMKKNASTTECYREVD 204
Query: 87 D 87
D
Sbjct: 205 D 205
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 23.1 bits (48), Expect = 1.0
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 14/71 (19%)
Query: 29 KRALEKLKEIQAQKQRIKKALQFKALNLTENGYT-------------IEEEREILARAKD 75
++A +KL+EIQ ++ + K Q N T N + ++++ + + R ++
Sbjct: 152 EKAKQKLQEIQKSREALNKLTQSNT-NTTNNANSASNVSNAKKEISEVKKQEQEIKRHEN 210
Query: 76 TKNRLCFKSIE 86
K R F+ I+
Sbjct: 211 IKRRTGFRVIK 221
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 22.7 bits (47), Expect = 1.4
Identities = 18/51 (35%), Positives = 25/51 (48%), Gaps = 8/51 (15%)
Query: 35 LKEIQAQKQRIK-----KALQF---KALNLTENGYTIEEEREILARAKDTK 77
LK ++ KQ I KAL+ KAL E G +I E +E +K+ K
Sbjct: 441 LKSLEDSKQSIVDEAALKALEEERKKALEQAEQGCSIGENKEEAVASKENK 491
>ref|NP_223763.1| GAMMA-GLUTAMYLTRANSPEPTIDASE [Helicobacter pylori J99]
Length = 567
Score = 22.7 bits (47), Expect = 1.4
Identities = 15/42 (35%), Positives = 21/42 (49%), Gaps = 3/42 (7%)
Query: 37 EIQAQKQRIKKALQF--KALNLTENGYTI-EEEREILARAKD 75
E +K KK Q A+ L ENGY I + + E L A++
Sbjct: 144 EAMLKKYGTKKLSQLIDPAIKLAENGYAISQRQAETLKEARE 185
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 22.7 bits (47), Expect = 1.4
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 9 YTKYSQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTENGYTIEE-ER 67
Y + Q + N RALE+ +++ + +I KAL+ + +E I+E ++
Sbjct: 572 YRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIKIAKALKKDKMPKSEREKIIKELDK 631
Query: 68 EILARAKD 75
++ RAK+
Sbjct: 632 KMRERAKN 639
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 22.7 bits (47), Expect = 1.4
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 5 TNKDYTKYSQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTENGYTIE 64
TNK + + Q+ + KT+Q++ EI+ ++Q+ K TI
Sbjct: 171 TNKSGIELANSQIKAEQERQKTEQEKQKANKSEIELEQQKQK---------------TIN 215
Query: 65 EEREILARAKD 75
+R+++ KD
Sbjct: 216 TQRDLIKEQKD 226
>ref|NP_223527.1| catalase [Helicobacter pylori J99]
Length = 505
Score = 22.3 bits (46), Expect = 1.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 4 TTNKDYTKYSQRQLFS 19
T KD TKY++ ++FS
Sbjct: 67 TVTKDITKYTKAKIFS 82
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 22.3 bits (46), Expect = 1.8
Identities = 12/39 (30%), Positives = 18/39 (45%)
Query: 13 SQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQF 51
S R +F S K K + + LKE + +KK L +
Sbjct: 533 SHRYAINFHRSTKLKNMKQIALLKEKGIGEASVKKLLDY 571
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 22.3 bits (46), Expect = 1.8
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 20 FLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTENGYTIEEEREILAR 72
F+N I++ K + +E Q +++ +K+ + LN+ G + E E AR
Sbjct: 106 FVNKIRSDTKAMVLDQEESQLRERILKRKNEKIILNVNFIGEEVLGEEEASAR 158
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 22.3 bits (46), Expect = 1.8
Identities = 13/42 (30%), Positives = 20/42 (46%)
Query: 54 LNLTENGYTIEEEREILARAKDTKNRLCFKSIEDFKKHCENL 95
LN +NG+ I +I A+ KN K + D ++ NL
Sbjct: 15 LNAEDNGFFISAGYQIGEAAQMVKNTGELKKLSDTYENLSNL 56
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 21.9 bits (45), Expect = 2.3
Identities = 10/55 (18%), Positives = 25/55 (45%)
Query: 1 MPNTTNKDYTKYSQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALN 55
+ N +D ++ + ++ FL + EK+ + + ++ ++ KALN
Sbjct: 36 LENVPRQDDEEFQKNEINKFLKNAYGYDCNTYEKVDSVIYVDKEVRVLIEVKALN 90
>ref|NP_224119.1| putative ferredoxin-like protein [Helicobacter pylori J99]
Length = 458
Score = 21.9 bits (45), Expect = 2.3
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 11 KYSQRQL--FSFLNSIKTKQKRALEKLKEI 38
KY++ L +S N+I T+QK L +LK I
Sbjct: 289 KYNRPSLIQWSSTNAINTRQKVRLVRLKTI 318
>ref|NP_223487.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT A [Helicobacter pylori J99]
Length = 453
Score = 21.9 bits (45), Expect = 2.3
Identities = 13/62 (20%), Positives = 28/62 (44%)
Query: 6 NKDYTKYSQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTENGYTIEE 65
+KD T + + +F+N I+ K+ + I ++ A + L E G+ + E
Sbjct: 209 SKDSTSANLKPTHTFINLIRDKRFKIAILRDHINDASNEVQLAYENTIKALKEMGHEVVE 268
Query: 66 ER 67
++
Sbjct: 269 KK 270
>ref|NP_223338.1| putative LIPOPOLYSACCHARIDE BIOSYNTHESIS PROTEIN [Helicobacter
pylori J99]
Length = 315
Score = 21.9 bits (45), Expect = 2.3
Identities = 8/12 (66%), Positives = 10/12 (82%)
Query: 82 FKSIEDFKKHCE 93
F +IEDF+KH E
Sbjct: 50 FTNIEDFEKHLE 61
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 21.9 bits (45), Expect = 2.3
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Query: 51 FKALNLTENGYTIEEEREILARAKDTKNRLCFKSIEDFKKHCE 93
F +L + T+ EE EILA + K ++ KS + F K E
Sbjct: 164 FSSLKIPFEEKTLSEE-EILALLHNPKRKIRKKSQKAFSKSLE 205
>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
J99]
Length = 619
Score = 21.6 bits (44), Expect = 3.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 8 DYTKYSQRQLFSFLNSIKTKQKRALEK 34
DY K S + N IK+ RALE+
Sbjct: 447 DYAKVSLAVVLGIDNIIKSNSYRALEE 473
>ref|NP_223446.1| putative [Helicobacter pylori J99]
Length = 506
Score = 21.6 bits (44), Expect = 3.0
Identities = 14/53 (26%), Positives = 25/53 (46%), Gaps = 4/53 (7%)
Query: 13 SQRQLFSFLNSIKT----KQKRALEKLKEIQAQKQRIKKALQFKALNLTENGY 61
+ +LFS + +++ K ALE L+ + + K L FK + L + Y
Sbjct: 139 ANEELFSLIPNLQCFFVEHFKEALEILQTPEIKADTHTKKLPFKTIELNDKEY 191
>ref|NP_223222.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [Helicobacter pylori J99]
Length = 312
Score = 21.6 bits (44), Expect = 3.0
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 64 EEEREILARAKDTKNRLCFKSIEDFKK 90
E+ +EIL + D + + + ++ DF+K
Sbjct: 27 EDAKEILEKRLDKEVKSIYSNLTDFQK 53
>ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 390
Score = 21.6 bits (44), Expect = 3.0
Identities = 18/67 (26%), Positives = 30/67 (43%), Gaps = 6/67 (8%)
Query: 20 FLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTENGYTIEEEREILARAKDTKNR 79
FL +K++ + EKLKE+ Q + I K N Y ++E ++ D +R
Sbjct: 217 FLEPLKSRGWSSDEKLKELYYQNRLIFKN------NRPYEKYYLKESQDNCLSVLDFYSR 270
Query: 80 LCFKSIE 86
K +E
Sbjct: 271 QGTKDLE 277
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 21.6 bits (44), Expect = 3.0
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 48 ALQFKALNLTENGYTIEEEREILARAKDTKNRLCFKSIEDFKKHCENL 95
+L AL+ +NG+ + +I A+ KN + + D + NL
Sbjct: 12 SLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNL 59
>ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 452
Score = 21.2 bits (43), Expect = 3.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 53 ALNLTENGYTIEEEREILAR 72
A +LTE GY E+ IL R
Sbjct: 181 ATSLTEAGYVGEDVENILTR 200
>ref|NP_223680.1| putative POLYSACCHARIDE BIOSYNTHESIS PROTEIN [Helicobacter pylori
J99]
Length = 389
Score = 21.2 bits (43), Expect = 3.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 37 EIQAQKQRIKKALQFKALNLTENGYTIEEEREILARAKDTKN 78
E + +++R++ ALN T I+ E+ KD KN
Sbjct: 339 ENKLERERMQNEYAKSALNYTLENSVIQIEKVYEEAIKDFKN 380
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 21.2 bits (43), Expect = 3.9
Identities = 9/27 (33%), Positives = 16/27 (58%)
Query: 32 LEKLKEIQAQKQRIKKALQFKALNLTE 58
L+K+K QAQKQ + + + N+ +
Sbjct: 1266 LDKIKITQAQKQALLETINHLTDNINQ 1292
>ref|NP_223069.1| putative [Helicobacter pylori J99]
Length = 438
Score = 21.2 bits (43), Expect = 3.9
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 28 QKRALEKLKEIQAQKQRIKKALQFKALNLTENGYTIEEEREI 69
+K L+ + Q + ++KAL F A+N ++ + E +E+
Sbjct: 187 EKYHLKNTRTAQGDTE-MQKALTFYAINQKKSAFANEASKEL 227
>ref|NP_223063.1| putative [Helicobacter pylori J99]
Length = 207
Score = 21.2 bits (43), Expect = 3.9
Identities = 17/63 (26%), Positives = 29/63 (45%), Gaps = 18/63 (28%)
Query: 1 MPNTTNKDYTKYSQRQLFSFLNSIKTKQKRAL-------------EKLKEIQAQKQRIKK 47
+P K++ K +Q+ FL K K AL E K+++A K+R+KK
Sbjct: 55 VPPFYQKEFKKALAQQIAYFL-----KDKSALTFNISGNVFFSFEESPKDLKAIKERLKK 109
Query: 48 ALQ 50
++
Sbjct: 110 TIE 112
>ref|NP_224100.1| putative [Helicobacter pylori J99]
Length = 510
Score = 20.8 bits (42), Expect = 5.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 23 SIKTKQKRALEKLKEIQAQKQRIKKALQFK 52
S+K R L + + AQ+ IK+A + K
Sbjct: 49 SLKNAWNRVLSNHEGLHAQEYAIKRASKMK 78
>ref|NP_223833.1| ADP-HEPTOSE--LPS HEPTOSYLTRANSFERASE II [Helicobacter pylori J99]
Length = 349
Score = 20.8 bits (42), Expect = 5.2
Identities = 8/12 (66%), Positives = 9/12 (74%)
Query: 74 KDTKNRLCFKSI 85
K+ KN LC KSI
Sbjct: 322 KNEKNHLCMKSI 333
>ref|NP_223605.1| putative [Helicobacter pylori J99]
Length = 188
Score = 20.8 bits (42), Expect = 5.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 27 KQKRALEKLKEIQAQKQRIKKALQFKALNLTEN 59
K + A+ K+K Q ++IK+ L+ NL +N
Sbjct: 136 KSEVAVVKIKLEGCQIEQIKRYLKASVENLNDN 168
>ref|NP_223475.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 553
Score = 20.8 bits (42), Expect = 5.2
Identities = 10/35 (28%), Positives = 20/35 (56%)
Query: 25 KTKQKRALEKLKEIQAQKQRIKKALQFKALNLTEN 59
K K + EK++++ Q + +KK+ Q A + E+
Sbjct: 516 KLDSKISDEKMQDLNYQVEALKKSPQIVAKDFLES 550
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 20.4 bits (41), Expect = 6.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 16 QLFSFLNSIKTKQKRALEKL 35
++F LNS + K+KR KL
Sbjct: 337 RIFISLNSFERKKKRQKSKL 356
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 20.4 bits (41), Expect = 6.7
Identities = 10/35 (28%), Positives = 18/35 (50%)
Query: 22 NSIKTKQKRALEKLKEIQAQKQRIKKALQFKALNL 56
+S+KT +L+EIQ + + L+ K + L
Sbjct: 78 SSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITL 112
>ref|NP_223641.1| putative [Helicobacter pylori J99]
Length = 268
Score = 20.4 bits (41), Expect = 6.7
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 21 LNSIKTKQKRALEK 34
++ IK+K+KR LEK
Sbjct: 154 VSHIKSKEKRELEK 167
>ref|NP_223093.1| putative [Helicobacter pylori J99]
Length = 165
Score = 20.4 bits (41), Expect = 6.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 59 NGYTIEEEREILARAKDTK 77
N Y + +ERE L KD K
Sbjct: 117 NKYFVSKERESLTDFKDLK 135
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 20.4 bits (41), Expect = 6.7
Identities = 13/37 (35%), Positives = 20/37 (53%)
Query: 32 LEKLKEIQAQKQRIKKALQFKALNLTENGYTIEEERE 68
+EK EI+ +R K++L + N +N EEE E
Sbjct: 225 IEKHDEIKKDFERNKESLIREIENHCKNECNSEEEPE 261
>ref|NP_223915.1| putative [Helicobacter pylori J99]
Length = 123
Score = 20.0 bits (40), Expect = 8.8
Identities = 7/32 (21%), Positives = 19/32 (58%)
Query: 39 QAQKQRIKKALQFKALNLTENGYTIEEEREIL 70
+++KQ ++ +Q K + + + E E+E++
Sbjct: 51 ESKKQLKERGIQLKEKSKAQQQESFEREKELM 82
>ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter pylori J99]
Length = 567
Score = 20.0 bits (40), Expect = 8.8
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 18 FSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTENGYTIEEEREILAR 72
F + +++ ++ ++ A K+R+ + Q+ EN E E+E + R
Sbjct: 362 FEIVETMRVIKRDQKLEINNKNAHKERLMHSAQYFNFKYDENLLDFELEKEGVLR 416
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.129 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,952
Number of Sequences: 1491
Number of extensions: 4108
Number of successful extensions: 54
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of query: 95
length of database: 494,079
effective HSP length: 71
effective length of query: 24
effective length of database: 388,218
effective search space: 9317232
effective search space used: 9317232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 40 (20.0 bits)