BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645512|ref|NP_207687.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(88 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223549.1| putative [Helicobacter pylori J99] 97 4e-23
ref|NP_223543.1| putative [Helicobacter pylori J99] 91 3e-21
ref|NP_222930.1| DNA REPAIR PROTEIN [Helicobacter pylori J99] 25 0.37
ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERA... 24 0.48
ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUB... 23 0.82
ref|NP_223173.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 22 2.4
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 22 2.4
ref|NP_224105.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE ... 22 2.4
ref|NP_223733.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BET... 22 2.4
ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99] 22 2.4
ref|NP_223138.1| putative [Helicobacter pylori J99] 22 2.4
ref|NP_223245.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_223076.1| putative RIBOSOMAL PROTEIN L11 METHYLTRANS... 22 3.1
ref|NP_223228.1| putative [Helicobacter pylori J99] 20 6.9
ref|NP_224034.1| DNA transfer protein [Helicobacter pylori ... 20 9.0
ref|NP_223021.1| putative [Helicobacter pylori J99] 20 9.0
>ref|NP_223549.1| putative [Helicobacter pylori J99]
Length = 90
Score = 97.4 bits (241), Expect = 4e-23
Identities = 48/90 (53%), Positives = 63/90 (69%), Gaps = 2/90 (2%)
Query: 1 MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECH 60
ML + K F KD L+ NGFD +L +V+ L ++PL+P+++DH LKG K FRECH
Sbjct: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLEPKYKDHPLKGALKDFRECH 60
Query: 61 IKPDVLLVYLVKDDE--LILLRLGSHSELF 88
+KPD+LLVY +K E L L+RLGSHSELF
Sbjct: 61 LKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
>ref|NP_223543.1| putative [Helicobacter pylori J99]
Length = 100
Score = 91.3 bits (225), Expect = 3e-21
Identities = 50/89 (56%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Query: 1 MLKLNLKKSFQKDFDKLLLNG-FDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFREC 59
ML++ LKK F KD K +LN + V + V+ LR + PLD +F+DHAL G +K RE
Sbjct: 1 MLEIELKKKFTKDLKKHILNQKIELEVFDLVVENLRNQIPLDKRFKDHALSGTYKGCRER 60
Query: 60 HIKPDVLLVYLVKDDELILLRLGSHSELF 88
HIKPDVLLVY VK + L L+RLGSHSELF
Sbjct: 61 HIKPDVLLVYRVKGNVLTLVRLGSHSELF 89
>ref|NP_222930.1| DNA REPAIR PROTEIN [Helicobacter pylori J99]
Length = 448
Score = 24.6 bits (52), Expect = 0.37
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 16 KLLLNGFDDSVLNEVILTLRKK 37
K L NGFD + LN +I L KK
Sbjct: 321 KRLANGFDTNRLNMLIALLEKK 342
>ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE [Helicobacter pylori
J99]
Length = 581
Score = 24.3 bits (51), Expect = 0.48
Identities = 11/35 (31%), Positives = 20/35 (56%)
Query: 5 NLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEP 39
N + +F KDF + + GF+ V+N I+ + +P
Sbjct: 109 NHEFNFSKDFLEKNIKGFNGDVVNANIIKIADNKP 143
>ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT) [Helicobacter
pylori J99]
Length = 409
Score = 23.5 bits (49), Expect = 0.82
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 7 KKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEP 39
K F K+ ++L+ N F L E+I + +P
Sbjct: 209 KMKFSKELNRLIPNDFKVKTLGELITWISGSQP 241
>ref|NP_223173.1| putative [Helicobacter pylori J99]
Length = 251
Score = 22.3 bits (46), Expect = 1.8
Identities = 7/16 (43%), Positives = 14/16 (86%)
Query: 17 LLLNGFDDSVLNEVIL 32
LL++ FDD+ L+E+++
Sbjct: 157 LLIHSFDDNELSEIVI 172
>ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 588
Score = 21.9 bits (45), Expect = 2.4
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 2 LKLNLKKSFQKDFDKLLLN 20
L+L+L K QK+ DKL N
Sbjct: 231 LQLSLDKRLQKEADKLFEN 249
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 21.9 bits (45), Expect = 2.4
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 21 GFDDSVLNEVILTLRKKEPLDPQFQDHALKGK 52
G D L E + + F++HALKG+
Sbjct: 840 GLDYQALEESLELFENDAGIQALFKNHALKGE 871
>ref|NP_224105.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 447
Score = 21.9 bits (45), Expect = 2.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 11 QKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHAL 49
+KD K +LN ++ +EV+L L K + F+D +
Sbjct: 391 EKDRKKAILNALENLKDDEVLLILGKGDENIQIFKDKTI 429
>ref|NP_223733.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN [Helicobacter
pylori J99]
Length = 341
Score = 21.9 bits (45), Expect = 2.4
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 22 FDDSVLNEVILTLRKKEPLDPQFQDHALKGK 52
F ++NEVI +K ++ + D+ +GK
Sbjct: 241 FTPQLINEVIEMFKKAVEIEASWGDYITQGK 271
>ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99]
Length = 508
Score = 21.9 bits (45), Expect = 2.4
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 19 LNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECHIKPDVLLVYLVKDDELIL 78
L G + L I+ E + + + H LKGK + + + PDV+ VK ++
Sbjct: 279 LKGVSEPELKRKIIGETFIEVFEKEAKKHHLKGKIEFLAQGTLYPDVIESVSVKGPSKVI 338
>ref|NP_223138.1| putative [Helicobacter pylori J99]
Length = 495
Score = 21.9 bits (45), Expect = 2.4
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 22 FDDSVLNEVILTLRKKEPLDPQFQDHALK 50
F+D+ +++++ K+ LDP + +ALK
Sbjct: 62 FEDAKVSDLVAFFSKEWVLDPLSKRYALK 90
>ref|NP_223245.1| putative [Helicobacter pylori J99]
Length = 372
Score = 21.6 bits (44), Expect = 3.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 37 KEPLDPQFQDHALKGKWKPFRECHI 61
+E L P +H L+ PF++C +
Sbjct: 224 RELLRPNTLNHQLQPSLTPFKDCAV 248
>ref|NP_223076.1| putative RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE [Helicobacter
pylori J99]
Length = 329
Score = 21.6 bits (44), Expect = 3.1
Identities = 9/17 (52%), Positives = 12/17 (69%)
Query: 4 LNLKKSFQKDFDKLLLN 20
LNLK+S Q +FD L+
Sbjct: 102 LNLKQSLQSEFDFFYLS 118
>ref|NP_223228.1| putative [Helicobacter pylori J99]
Length = 416
Score = 20.4 bits (41), Expect = 6.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 15 DKLLLNGFDDSVLNE 29
DK LLNG D NE
Sbjct: 220 DKYLLNGADGMQFNE 234
>ref|NP_224034.1| DNA transfer protein [Helicobacter pylori J99]
Length = 304
Score = 20.0 bits (40), Expect = 9.0
Identities = 8/30 (26%), Positives = 15/30 (49%)
Query: 2 LKLNLKKSFQKDFDKLLLNGFDDSVLNEVI 31
L LNL + DK L+ + S ++ ++
Sbjct: 255 LSLNLSMRYTHSLDKDLMRAYFKSAIDVIV 284
>ref|NP_223021.1| putative [Helicobacter pylori J99]
Length = 251
Score = 20.0 bits (40), Expect = 9.0
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 8 KSFQKDFDKLLL 19
K+F+KDFD + L
Sbjct: 92 KAFRKDFDSVCL 103
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.145 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,214
Number of Sequences: 1491
Number of extensions: 3865
Number of successful extensions: 20
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 88
length of database: 494,079
effective HSP length: 64
effective length of query: 24
effective length of database: 398,655
effective search space: 9567720
effective search space used: 9567720
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 40 (20.0 bits)